WARNING An augustus species is mentioned in the config file, dataset default species (fly) will be ignored INFO ****************** Start a BUSCO 3.0.2 analysis, current time: 06/05/2020 07:30:56 ****************** INFO Configuration loaded from /gscratch/scrubbed/samwhite/outputs/20200605_cbai_busco_transcriptome_v2.1/config.ini INFO Init tools... INFO Check dependencies... INFO Check input file... INFO To reproduce this run: python /gscratch/srlab/programs/busco-v3/scripts/run_BUSCO.py -i /gscratch/srlab/sam/data/C_bairdi/transcriptomes/cbai_transcriptome_v2.1.fasta -o cbai_transcriptome_v2.1.fasta -l /gscratch/srlab/sam/data/databases/BUSCO/metazoa_odb9/ -m transcriptome -c 28 --long -z INFO Mode is: transcriptome INFO The lineage dataset is: metazoa_odb9 (eukaryota) INFO Temp directory is ./tmp/ INFO ****** Step 1/2, current time: 06/05/2020 07:30:58 ****** INFO Create blast database... INFO [makeblastdb] Building a new DB, current time: 06/05/2020 07:30:58 INFO [makeblastdb] New DB name: /gscratch/scrubbed/samwhite/outputs/20200605_cbai_busco_transcriptome_v2.1/tmp/cbai_transcriptome_v2.1.fasta_1063169970 INFO [makeblastdb] New DB title: /gscratch/srlab/sam/data/C_bairdi/transcriptomes/cbai_transcriptome_v2.1.fasta INFO [makeblastdb] Sequence type: Nucleotide INFO [makeblastdb] Keep MBits: T INFO [makeblastdb] Maximum file size: 1000000000B INFO [makeblastdb] Adding sequences from FASTA; added 263054 sequences in 6.46831 seconds. INFO [makeblastdb] 1 of 1 task(s) completed at 06/05/2020 07:31:04 INFO Running tblastn, writing output to /gscratch/scrubbed/samwhite/outputs/20200605_cbai_busco_transcriptome_v2.1/run_cbai_transcriptome_v2.1.fasta/blast_output/tblastn_cbai_transcriptome_v2.1.fasta.tsv... INFO [tblastn] 1 of 1 task(s) completed at 06/05/2020 07:36:17 INFO ****** Step 2/2, current time: 06/05/2020 07:36:17 ****** INFO Maximum number of candidate transcript per BUSCO limited to: 3 INFO Getting coordinates for candidate transcripts... INFO Extracting candidate transcripts... INFO Translating candidate transcripts... INFO Running HMMER to confirm transcript orthology: INFO [hmmsearch] 275 of 2749 task(s) completed at 06/05/2020 07:36:56 INFO [hmmsearch] 2749 of 2749 task(s) completed at 06/05/2020 07:37:03 INFO Results: INFO C:98.8%[S:24.9%,D:73.9%],F:0.9%,M:0.3%,n:978 INFO 967 Complete BUSCOs (C) INFO 244 Complete and single-copy BUSCOs (S) INFO 723 Complete and duplicated BUSCOs (D) INFO 9 Fragmented BUSCOs (F) INFO 2 Missing BUSCOs (M) INFO 978 Total BUSCO groups searched INFO BUSCO analysis done with WARNING(s). Total running time: 378.31381011009216 seconds INFO Results written in /gscratch/scrubbed/samwhite/outputs/20200605_cbai_busco_transcriptome_v2.1/run_cbai_transcriptome_v2.1.fasta/