diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000249s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.000112s] Opening the output file... [0.00079s] Loading query sequences... [7.86004s] Masking queries... [6.33801s] Building query seed set... [0.06124s] Algorithm: Double-indexed Building query histograms... [0.761922s] Allocating buffers... [0.001045s] Loading reference sequences... [369.574s] Masking reference... [49.3052s] Initializing temporary storage... [0.017458s] Building reference histograms... [10.3833s] Allocating buffers... [0.000459s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.25333s] Building query seed array... [0.543902s] Computing hash join... [3.52726s] Building seed filter... [0.131606s] Searching alignments... [14.9391s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [8.21208s] Building query seed array... [0.840636s] Computing hash join... [3.42501s] Building seed filter... [0.129399s] Searching alignments... [14.6274s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [8.38166s] Building query seed array... [0.639935s] Computing hash join... [3.37726s] Building seed filter... [0.130786s] Searching alignments... [13.9466s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [6.23082s] Building query seed array... [0.632206s] Computing hash join... [3.49513s] Building seed filter... [0.128719s] Searching alignments... [13.4108s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.20629s] Building query seed array... [0.569775s] Computing hash join... [3.19809s] Building seed filter... [0.129359s] Searching alignments... [12.0157s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [8.29321s] Building query seed array... [0.73818s] Computing hash join... [3.35794s] Building seed filter... [0.125799s] Searching alignments... [11.6598s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [8.43212s] Building query seed array... [0.743949s] Computing hash join... [3.3555s] Building seed filter... [0.129907s] Searching alignments... [11.9874s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.75932s] Building query seed array... [0.878146s] Computing hash join... [3.47745s] Building seed filter... [0.151862s] Searching alignments... [12.39s] Deallocating buffers... [0.087275s] Opening temporary output file... [0.001655s] Computing alignments... [128.559s] Deallocating reference... [0.076973s] Loading reference sequences... [352.209s] Masking reference... [49.6166s] Initializing temporary storage... [0.015346s] Building reference histograms... [9.46321s] Allocating buffers... [0.00108s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.25446s] Building query seed array... [0.620041s] Computing hash join... [3.41957s] Building seed filter... [0.15629s] Searching alignments... [14.2279s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [8.64682s] Building query seed array... [0.744065s] Computing hash join... [3.4181s] Building seed filter... [0.133109s] Searching alignments... [14.0515s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [8.47237s] Building query seed array... [0.730915s] Computing hash join... [3.52813s] Building seed filter... [0.134593s] Searching alignments... [13.1323s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [6.36413s] Building query seed array... [0.593485s] Computing hash join... [3.37776s] Building seed filter... [0.136856s] Searching alignments... [12.9456s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [6.30976s] Building query seed array... [0.572727s] Computing hash join... [3.10761s] Building seed filter... [0.140774s] Searching alignments... [11.5848s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [8.40876s] Building query seed array... [0.771738s] Computing hash join... [3.03658s] Building seed filter... [0.128651s] Searching alignments... [11.3158s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [8.48s] Building query seed array... [0.725025s] Computing hash join... [3.01547s] Building seed filter... [0.125533s] Searching alignments... [11.486s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [6.39159s] Building query seed array... [0.611265s] Computing hash join... [2.96374s] Building seed filter... [0.129819s] Searching alignments... [11.2002s] Deallocating buffers... [0.317148s] Opening temporary output file... [0.001745s] Computing alignments... [144.092s] Deallocating reference... [0.073514s] Loading reference sequences... [352.666s] Masking reference... [49.0725s] Initializing temporary storage... [0.015477s] Building reference histograms... [9.03306s] Allocating buffers... [0.001069s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.30735s] Building query seed array... [0.592581s] Computing hash join... [2.99224s] Building seed filter... [0.147164s] Searching alignments... [15.8141s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [8.30939s] Building query seed array... [0.70279s] Computing hash join... [3.60381s] Building seed filter... [0.128949s] Searching alignments... [14.6167s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [8.40927s] Building query seed array... [0.710384s] Computing hash join... [3.4674s] Building seed filter... [0.132717s] Searching alignments... [13.78s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [6.69643s] Building query seed array... [0.597897s] Computing hash join... [3.39247s] Building seed filter... [0.13011s] Searching alignments... [13.8316s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [6.23104s] Building query seed array... [0.603125s] Computing hash join... [3.42474s] Building seed filter... [0.128733s] Searching alignments... [12.3301s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [8.28552s] Building query seed array... [0.905318s] Computing hash join... [3.27821s] Building seed filter... [0.128473s] Searching alignments... [12.0846s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [8.47286s] Building query seed array... [0.727727s] Computing hash join... [3.44313s] Building seed filter... [0.128421s] Searching alignments... [12.3299s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [6.28633s] Building query seed array... [0.600965s] Computing hash join... [3.48093s] Building seed filter... [0.133247s] Searching alignments... [11.8034s] Deallocating buffers... [0.086287s] Opening temporary output file... [0.002192s] Computing alignments... [165.231s] Deallocating reference... [0.073051s] Loading reference sequences... [322.378s] Masking reference... [49.5035s] Initializing temporary storage... [0.019405s] Building reference histograms... [8.88931s] Allocating buffers... [0.001085s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.34796s] Building query seed array... [0.564152s] Computing hash join... [3.34453s] Building seed filter... [0.132s] Searching alignments... [14.3185s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [8.2681s] Building query seed array... [0.719156s] Computing hash join... [3.42828s] Building seed filter... [0.136179s] Searching alignments... [14.225s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [8.42287s] Building query seed array... [0.703204s] Computing hash join... [3.4196s] Building seed filter... [0.129181s] Searching alignments... [13.2647s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [6.29019s] Building query seed array... [0.590714s] Computing hash join... [3.41548s] Building seed filter... [0.1277s] Searching alignments... [12.9452s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [6.201s] Building query seed array... [0.58121s] Computing hash join... [3.47593s] Building seed filter... [0.130719s] Searching alignments... [11.7464s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [8.30804s] Building query seed array... [0.761568s] Computing hash join... [3.50074s] Building seed filter... [0.135764s] Searching alignments... [11.4502s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [8.50858s] Building query seed array... [0.71551s] Computing hash join... [3.49921s] Building seed filter... [0.139455s] Searching alignments... [11.7355s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [6.28842s] Building query seed array... [0.607591s] Computing hash join... [3.3585s] Building seed filter... [0.125043s] Searching alignments... [11.3034s] Deallocating buffers... [0.087324s] Opening temporary output file... [0.001999s] Computing alignments... [139.614s] Deallocating reference... [0.065094s] Loading reference sequences... [318.428s] Masking reference... [50.1839s] Initializing temporary storage... [0.01536s] Building reference histograms... [9.30581s] Allocating buffers... [0.001065s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.26476s] Building query seed array... [0.59424s] Computing hash join... [3.47085s] Building seed filter... [0.130908s] Searching alignments... [13.8635s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [9.60562s] Building query seed array... [0.727882s] Computing hash join... [3.57839s] Building seed filter... [0.140577s] Searching alignments... [13.2686s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [8.43392s] Building query seed array... [0.738721s] Computing hash join... [3.75237s] Building seed filter... [0.140592s] Searching alignments... [12.8504s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [6.42842s] Building query seed array... [0.59241s] Computing hash join... [3.64407s] Building seed filter... [0.141594s] Searching alignments... [12.7276s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [6.27243s] Building query seed array... [0.606187s] Computing hash join... [3.59188s] Building seed filter... [0.127602s] Searching alignments... [11.3606s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [8.63204s] Building query seed array... [0.732273s] Computing hash join... [3.39341s] Building seed filter... [0.129171s] Searching alignments... [11.0518s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [8.83777s] Building query seed array... [0.756707s] Computing hash join... [3.45232s] Building seed filter... [0.131951s] Searching alignments... [11.2153s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [6.58486s] Building query seed array... [0.51617s] Computing hash join... [3.79232s] Building seed filter... [0.146073s] Searching alignments... [10.9947s] Deallocating buffers... [0.760621s] Opening temporary output file... [0.00107s] Computing alignments... [136.364s] Deallocating reference... [0.068695s] Loading reference sequences... [138.568s] Masking reference... [18.5163s] Initializing temporary storage... [0.016225s] Building reference histograms... [3.25229s] Allocating buffers... [0.000445s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.33129s] Building query seed array... [0.608759s] Computing hash join... [1.18917s] Building seed filter... [0.068928s] Searching alignments... [5.55029s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.01124s] Building query seed array... [0.611634s] Computing hash join... [1.14026s] Building seed filter... [0.066894s] Searching alignments... [5.34945s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.06043s] Building query seed array... [0.698164s] Computing hash join... [1.14054s] Building seed filter... [0.066234s] Searching alignments... [5.13087s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.26593s] Building query seed array... [0.621692s] Computing hash join... [1.16923s] Building seed filter... [0.06678s] Searching alignments... [4.96169s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.26075s] Building query seed array... [0.498659s] Computing hash join... [1.12682s] Building seed filter... [0.065378s] Searching alignments... [5.76084s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.05176s] Building query seed array... [0.717157s] Computing hash join... [1.1743s] Building seed filter... [0.063677s] Searching alignments... [4.46085s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.05251s] Building query seed array... [0.636714s] Computing hash join... [1.15547s] Building seed filter... [0.065875s] Searching alignments... [4.47867s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.26413s] Building query seed array... [0.575885s] Computing hash join... [1.1307s] Building seed filter... [0.067622s] Searching alignments... [4.33765s] Deallocating buffers... [0.037557s] Opening temporary output file... [0.001444s] Computing alignments... [54.3574s] Deallocating reference... [0.027671s] Loading reference sequences... [3.5e-05s] Deallocating buffers... [0.150903s] Joining output blocks... [15.6336s] Deallocating queries... [0.018433s] Loading query sequences... [2.8e-05s] Closing the input file... [2.8e-05s] Closing the output file... [0.408915s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [7e-06s] Total time = 4023.18s Reported 9341425 pairwise alignments, 9510161 HSPs. 268106 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.037366s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.000119s] Opening the output file... [0.000799s] Loading query sequences... [3.38797s] Masking queries... [2.75697s] Building query seed set... [0.064171s] Algorithm: Double-indexed Building query histograms... [0.397154s] Allocating buffers... [0.000665s] Loading reference sequences... [379.153s] Masking reference... [49.0428s] Initializing temporary storage... [0.016614s] Building reference histograms... [8.89993s] Allocating buffers... [0.001164s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.29284s] Building query seed array... [0.292933s] Computing hash join... [2.43525s] Building seed filter... [0.073314s] Searching alignments... [7.57338s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [8.25729s] Building query seed array... [0.347177s] Computing hash join... [2.43569s] Building seed filter... [0.072813s] Searching alignments... [7.48836s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [8.36103s] Building query seed array... [0.34519s] Computing hash join... [2.40471s] Building seed filter... [0.072826s] Searching alignments... [7.29725s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [6.23503s] Building query seed array... [0.268277s] Computing hash join... [2.40304s] Building seed filter... [0.07071s] Searching alignments... [6.8679s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.16619s] Building query seed array... [0.274502s] Computing hash join... [2.4293s] Building seed filter... [0.068985s] Searching alignments... [6.34997s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [8.28665s] Building query seed array... [0.35197s] Computing hash join... [2.42301s] Building seed filter... [0.070882s] Searching alignments... [6.56559s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [8.39325s] Building query seed array... [0.339438s] Computing hash join... [2.39901s] Building seed filter... [0.071924s] Searching alignments... [6.13553s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.23897s] Building query seed array... [0.286467s] Computing hash join... [2.4425s] Building seed filter... [0.06959s] Searching alignments... [6.11006s] Deallocating buffers... [0.086242s] Opening temporary output file... [0.002053s] Computing alignments... [78.2987s] Deallocating reference... [0.076609s] Loading reference sequences... [359.627s] Masking reference... [49.1525s] Initializing temporary storage... [0.015288s] Building reference histograms... [10.0925s] Allocating buffers... [0.001039s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.2779s] Building query seed array... [0.275535s] Computing hash join... [2.98271s] Building seed filter... [0.073938s] Searching alignments... [7.25091s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [8.26404s] Building query seed array... [0.370278s] Computing hash join... [2.98957s] Building seed filter... [0.067894s] Searching alignments... [7.07989s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [8.33806s] Building query seed array... [0.33971s] Computing hash join... [3.00293s] Building seed filter... [0.069286s] Searching alignments... [7.04728s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [6.22344s] Building query seed array... [0.264159s] Computing hash join... [2.99619s] Building seed filter... [0.070767s] Searching alignments... [6.6137s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [6.14942s] Building query seed array... [0.277626s] Computing hash join... [3.03737s] Building seed filter... [0.067632s] Searching alignments... [6.18245s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [8.32447s] Building query seed array... [0.337795s] Computing hash join... [2.83479s] Building seed filter... [0.073686s] Searching alignments... [5.83546s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [8.35237s] Building query seed array... [0.439354s] Computing hash join... [2.72897s] Building seed filter... [0.070452s] Searching alignments... [5.76301s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [6.31063s] Building query seed array... [0.285436s] Computing hash join... [2.76284s] Building seed filter... [0.069451s] Searching alignments... [5.86846s] Deallocating buffers... [0.086169s] Opening temporary output file... [0.001913s] Computing alignments... [93.337s] Deallocating reference... [0.068986s] Loading reference sequences... [362.25s] Masking reference... [49.0571s] Initializing temporary storage... [0.015391s] Building reference histograms... [10.0619s] Allocating buffers... [0.001047s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.25975s] Building query seed array... [0.282805s] Computing hash join... [2.58433s] Building seed filter... [0.077557s] Searching alignments... [7.87264s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [8.28074s] Building query seed array... [0.362895s] Computing hash join... [2.5708s] Building seed filter... [0.067765s] Searching alignments... [8.18289s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [8.32893s] Building query seed array... [0.339787s] Computing hash join... [2.94539s] Building seed filter... [0.072347s] Searching alignments... [7.52325s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [6.21591s] Building query seed array... [0.262989s] Computing hash join... [2.85429s] Building seed filter... [0.071495s] Searching alignments... [7.13343s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [6.14173s] Building query seed array... [0.297547s] Computing hash join... [3.16518s] Building seed filter... [0.069765s] Searching alignments... [6.41323s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [8.29357s] Building query seed array... [0.344095s] Computing hash join... [2.49392s] Building seed filter... [0.07444s] Searching alignments... [6.24592s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [8.32781s] Building query seed array... [0.341205s] Computing hash join... [2.62417s] Building seed filter... [0.071627s] Searching alignments... [6.21701s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [6.27971s] Building query seed array... [0.272527s] Computing hash join... [2.67874s] Building seed filter... [0.068859s] Searching alignments... [6.21597s] Deallocating buffers... [0.08675s] Opening temporary output file... [0.001014s] Computing alignments... [108.942s] Deallocating reference... [0.072234s] Loading reference sequences... [340.182s] Masking reference... [49.298s] Initializing temporary storage... [0.006589s] Building reference histograms... [8.92945s] Allocating buffers... [0.00106s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.45122s] Building query seed array... [0.272847s] Computing hash join... [2.77005s] Building seed filter... [0.076683s] Searching alignments... [7.45183s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [8.26967s] Building query seed array... [0.354516s] Computing hash join... [3.00153s] Building seed filter... [0.069151s] Searching alignments... [7.72646s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [8.36084s] Building query seed array... [0.350476s] Computing hash join... [2.94232s] Building seed filter... [0.069266s] Searching alignments... [7.02781s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [6.25855s] Building query seed array... [0.265699s] Computing hash join... [3.022s] Building seed filter... [0.071177s] Searching alignments... [6.62156s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [6.16358s] Building query seed array... [0.276728s] Computing hash join... [3.17794s] Building seed filter... [0.070547s] Searching alignments... [6.05699s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [8.28032s] Building query seed array... [0.357633s] Computing hash join... [3.27486s] Building seed filter... [0.073081s] Searching alignments... [6.30515s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [8.38194s] Building query seed array... [0.351201s] Computing hash join... [3.18214s] Building seed filter... [0.072959s] Searching alignments... [5.95894s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [6.23768s] Building query seed array... [0.290338s] Computing hash join... [3.58561s] Building seed filter... [0.071781s] Searching alignments... [5.76504s] Deallocating buffers... [0.087941s] Opening temporary output file... [0.002187s] Computing alignments... [89.282s] Deallocating reference... [0.069617s] Loading reference sequences... [320.455s] Masking reference... [49.3992s] Initializing temporary storage... [0.006725s] Building reference histograms... [10.144s] Allocating buffers... [0.001055s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.32266s] Building query seed array... [0.277769s] Computing hash join... [2.47336s] Building seed filter... [0.073054s] Searching alignments... [7.04646s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [8.24888s] Building query seed array... [0.355815s] Computing hash join... [2.89834s] Building seed filter... [0.070206s] Searching alignments... [7.07743s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [8.3682s] Building query seed array... [0.344936s] Computing hash join... [2.95381s] Building seed filter... [0.068844s] Searching alignments... [6.88719s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [6.24548s] Building query seed array... [0.309915s] Computing hash join... [3.33702s] Building seed filter... [0.070598s] Searching alignments... [6.61642s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [6.183s] Building query seed array... [0.291814s] Computing hash join... [3.28017s] Building seed filter... [0.069013s] Searching alignments... [5.97561s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [8.25494s] Building query seed array... [0.336483s] Computing hash join... [3.30985s] Building seed filter... [0.071659s] Searching alignments... [5.82276s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [8.36384s] Building query seed array... [0.340066s] Computing hash join... [3.15774s] Building seed filter... [0.072674s] Searching alignments... [5.7344s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [6.23514s] Building query seed array... [0.279618s] Computing hash join... [3.39491s] Building seed filter... [0.069532s] Searching alignments... [5.79297s] Deallocating buffers... [0.086948s] Opening temporary output file... [0.001521s] Computing alignments... [92.457s] Deallocating reference... [0.064259s] Loading reference sequences... [199.11s] Masking reference... [18.4276s] Initializing temporary storage... [0.004545s] Building reference histograms... [3.36906s] Allocating buffers... [0.000451s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.3262s] Building query seed array... [0.286025s] Computing hash join... [0.981455s] Building seed filter... [0.038198s] Searching alignments... [2.7813s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.05324s] Building query seed array... [0.324471s] Computing hash join... [0.959323s] Building seed filter... [0.037352s] Searching alignments... [2.76147s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.01905s] Building query seed array... [0.354297s] Computing hash join... [1.00234s] Building seed filter... [0.037692s] Searching alignments... [2.77231s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.2504s] Building query seed array... [0.259299s] Computing hash join... [0.9611s] Building seed filter... [0.03803s] Searching alignments... [2.71425s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.23047s] Building query seed array... [0.265637s] Computing hash join... [0.9441s] Building seed filter... [0.038669s] Searching alignments... [2.23931s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [2.96083s] Building query seed array... [0.343512s] Computing hash join... [0.985771s] Building seed filter... [0.040031s] Searching alignments... [2.90585s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.01362s] Building query seed array... [0.347683s] Computing hash join... [0.933295s] Building seed filter... [0.038153s] Searching alignments... [2.61855s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.2394s] Building query seed array... [0.266828s] Computing hash join... [0.944048s] Building seed filter... [0.0377s] Searching alignments... [2.68092s] Deallocating buffers... [0.039408s] Opening temporary output file... [0.000928s] Computing alignments... [39.1719s] Deallocating reference... [0.029376s] Loading reference sequences... [3.6e-05s] Deallocating buffers... [0.002667s] Joining output blocks... [9.61691s] Deallocating queries... [0.009352s] Loading query sequences... [5.5e-05s] Closing the input file... [4.5e-05s] Closing the output file... [0.225092s] Closing the database file... [6.7e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 3535.69s Reported 2546875 pairwise alignments, 2575204 HSPs. 108512 queries aligned.