Generating checksum for cbai_transcriptome_v1.0.fa Finished generating checksum for cbai_transcriptome_v1.0.fa Generating checksum for cbai_transcriptome_v1.5.fa Finished generating checksum for cbai_transcriptome_v1.5.fa Running DETONATE with cbai_transcriptome_v1.5.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.517211 unweighted_nucl_recall 0.870207 unweighted_nucl_F1 0.648803 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.477104 unweighted_pair_recall 0.754912 unweighted_pair_F1 0.584687 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.116573 unweighted_contig_precision 0.0567083 unweighted_contig_F1 0.0762998 Done computing all scores. Finished DETONATE with cbai_transcriptome_v1.5.fa and cbai_transcriptome_v1.0.fa. Generating checksum for cbai_transcriptome_v1.6.fa Finished generating checksum for cbai_transcriptome_v1.6.fa Running DETONATE with cbai_transcriptome_v1.6.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.499354 unweighted_nucl_recall 0.875105 unweighted_nucl_F1 0.635868 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.434808 unweighted_pair_recall 0.776564 unweighted_pair_F1 0.557477 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores.unweighted_contig_recall 0.06121 unweighted_contig_precision 0.0300906 unweighted_contig_F1 0.0403469 Finished DETONATE with cbai_transcriptome_v1.6.fa and cbai_transcriptome_v1.0.fa. Running DETONATE with cbai_transcriptome_v1.6.fa and cbai_transcriptome_v1.5.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.81804 unweighted_nucl_recall 0.852232 unweighted_nucl_F1 0.834786 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.66945 unweighted_pair_recall 0.755925 unweighted_pair_F1 0.710065 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.365723 unweighted_contig_precision 0.370175 unweighted_contig_F1 0.367935 Done computing all scores. Finished DETONATE with cbai_transcriptome_v1.6.fa and cbai_transcriptome_v1.5.fa. Generating checksum for cbai_transcriptome_v1.7.fa Finished generating checksum for cbai_transcriptome_v1.7.fa Running DETONATE with cbai_transcriptome_v1.7.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.806241 unweighted_nucl_recall 0.863888 unweighted_nucl_F1 0.83407 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.678055 unweighted_pair_recall 0.793342 unweighted_pair_F1 0.731182 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.201017 unweighted_contig_precision 0.189647 unweighted_contig_F1 0.195166 Done computing all scores. Finished DETONATE with cbai_transcriptome_v1.7.fa and cbai_transcriptome_v1.0.fa. Running DETONATE with cbai_transcriptome_v1.7.fa and cbai_transcriptome_v1.5.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.851991 unweighted_nucl_recall 0.542729 unweighted_nucl_F1 0.663072 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.691751 unweighted_pair_recall 0.511448 unweighted_pair_F1 0.58809 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.0286138 unweighted_contig_precision 0.0555076 unweighted_contig_F1 0.0377617 Done computing all scores. Finished DETONATE with cbai_transcriptome_v1.7.fa and cbai_transcriptome_v1.5.fa. Running DETONATE with cbai_transcriptome_v1.7.fa and cbai_transcriptome_v1.6.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.894583 unweighted_nucl_recall 0.546986 unweighted_nucl_F1 0.678877 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.803148 unweighted_pair_recall 0.526012 unweighted_pair_F1 0.635688 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.0817854 unweighted_contig_precision 0.156736 unweighted_contig_F1 0.107485 Done computing all scores. Finished DETONATE with cbai_transcriptome_v1.7.fa and cbai_transcriptome_v1.6.fa. Generating checksum for cbai_transcriptome_v2.0.fa Finished generating checksum for cbai_transcriptome_v2.0.fa Running DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0227552 unweighted_nucl_recall 0.940678 unweighted_nucl_F1 0.0444355 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0212989 unweighted_pair_recall 0.774005 unweighted_pair_F1 0.0414569 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores.unweighted_contig_recall 0.000915099 unweighted_contig_precision 1.27456e-05 unweighted_contig_F1 2.5141e-05 Finished DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.0.fa. Running DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.5.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0370061 unweighted_nucl_recall 0.909391 unweighted_nucl_F1 0.0711182 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0318189 unweighted_pair_recall 0.730806 unweighted_pair_F1 0.0609827 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.0298998 unweighted_contig_precision 0.000856786 unweighted_contig_F1 0.00166584 Done computing all scores. Finished DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.5.fa. Running DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.6.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0381924 unweighted_nucl_recall 0.901012 unweighted_nucl_F1 0.0732786 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0335446 unweighted_pair_recall 0.682281 unweighted_pair_F1 0.0639454 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.0334952 unweighted_contig_precision 0.000948838 unweighted_contig_F1 0.0018454 Done computing all scores. Finished DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.6.fa. Running DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.7.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0242495 unweighted_nucl_recall 0.93546 unweighted_nucl_F1 0.0472736 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0235482 unweighted_pair_recall 0.731402 unweighted_pair_F1 0.0456274 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.00196699 unweighted_contig_precision 2.90316e-05 unweighted_contig_F1 5.72187e-05 Done computing all scores. Finished DETONATE with cbai_transcriptome_v2.0.fa and cbai_transcriptome_v1.7.fa. Generating checksum for cbai_transcriptome_v3.0.fa Finished generating checksum for cbai_transcriptome_v3.0.fa Running DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0474251 unweighted_nucl_recall 0.935547 unweighted_nucl_F1 0.0902741 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0326377 unweighted_pair_recall 0.804264 unweighted_pair_F1 0.0627298 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.00940519 unweighted_contig_precision 0.000536319 unweighted_contig_F1 0.00101477 Done computing all scores. Finished DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.0.fa. Running DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.5.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0653728 unweighted_nucl_recall 0.766588 unweighted_nucl_F1 0.120472 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0435324 unweighted_pair_recall 0.678143 unweighted_pair_F1 0.0818129 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.00192902 unweighted_contig_precision 0.000226124 unweighted_contig_F1 0.000404796 Done computing all scores. Finished DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.5.fa. Running DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.6.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0676045 unweighted_nucl_recall 0.761113 unweighted_nucl_F1 0.124179 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0473064 unweighted_pair_recall 0.652717 unweighted_pair_F1 0.088219 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.00360487 unweighted_contig_precision 0.000417459 unweighted_contig_F1 0.000748266 Done computing all scores. Finished DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.6.fa. Running DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.7.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.050488 unweighted_nucl_recall 0.929388 unweighted_nucl_F1 0.0957731 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0363955 unweighted_pair_recall 0.766761 unweighted_pair_F1 0.0694924 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.0164556 unweighted_contig_precision 0.000994364 Done computing all scores. unweighted_contig_F1 0.0018754 Finished DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v1.7.fa. Running DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v2.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.791753 unweighted_nucl_recall 0.37783 unweighted_nucl_F1 0.511546 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.502914 unweighted_pair_recall 0.341219 unweighted_pair_F1 0.40658 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.0115029 unweighted_contig_precision 0.0470946 unweighted_contig_F1 0.0184897 Done computing all scores. Finished DETONATE with cbai_transcriptome_v3.0.fa and cbai_transcriptome_v2.0.fa. Generating checksum for 20200526.P_trituberculatus.Trinity.fa Finished generating checksum for 20200526.P_trituberculatus.Trinity.fa Running DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0295367 unweighted_nucl_recall 0.530543 unweighted_nucl_F1 0.0559581 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0108868 unweighted_pair_recall 0.164994 unweighted_pair_F1 0.0204259 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.0.fa. Running DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.5.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0394753 unweighted_nucl_recall 0.420901 unweighted_nucl_F1 0.0721808 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0136062 unweighted_pair_recall 0.131594 unweighted_pair_F1 0.0246625 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.5.fa. Running DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.6.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0409662 unweighted_nucl_recall 0.419084 unweighted_nucl_F1 0.0746366 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0142284 unweighted_pair_recall 0.121813 unweighted_pair_F1 0.0254806 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.6.fa. Running DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.7.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0311152 unweighted_nucl_recall 0.521209 unweighted_nucl_F1 0.0587246 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0114878 unweighted_pair_recall 0.146903 unweighted_pair_F1 0.0213093 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores. unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Finished DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v1.7.fa. Running DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v2.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0997382 unweighted_nucl_recall 0.0431177 unweighted_nucl_F1 0.0602072 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0256469 unweighted_pair_recall 0.0109471 unweighted_pair_F1 0.0153446 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v2.0.fa. Running DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v3.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0740209 unweighted_nucl_recall 0.0678975 unweighted_nucl_F1 0.0708271 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0206938 unweighted_pair_recall 0.0130007 unweighted_pair_F1 0.015969 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with 20200526.P_trituberculatus.Trinity.fa and cbai_transcriptome_v3.0.fa. Generating checksum for GFFJ01.1.fa Finished generating checksum for GFFJ01.1.fa Running DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0730822 unweighted_nucl_recall 0.28168 unweighted_nucl_F1 0.116054 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0269658 unweighted_pair_recall 0.0884612 unweighted_pair_F1 0.0413323 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.0.fa. Running DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.5.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0879698 unweighted_nucl_recall 0.201285 unweighted_nucl_F1 0.122432 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0313645 unweighted_pair_recall 0.0650743 unweighted_pair_F1 0.0423278 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.5.fa. Running DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.6.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0894583 unweighted_nucl_recall 0.196898 unweighted_nucl_F1 0.123023 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0319613 unweighted_pair_recall 0.0588108 unweighted_pair_F1 0.0414151 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores. unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Finished DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.6.fa. Running DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.7.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0771552 unweighted_nucl_recall 0.277314 unweighted_nucl_F1 0.120722 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0287979 unweighted_pair_recall 0.0802011 unweighted_pair_F1 0.0423788 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GFFJ01.1.fa and cbai_transcriptome_v1.7.fa. Running DETONATE with GFFJ01.1.fa and cbai_transcriptome_v2.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.163509 unweighted_nucl_recall 0.0153506 unweighted_nucl_F1 0.0280663 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0428816 unweighted_pair_recall 0.00394047 unweighted_pair_F1 0.0072177 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores.unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Finished DETONATE with GFFJ01.1.fa and cbai_transcriptome_v2.0.fa. Running DETONATE with GFFJ01.1.fa and cbai_transcriptome_v3.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.149743 unweighted_nucl_recall 0.0293383 unweighted_nucl_F1 0.0490639 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0416809 unweighted_pair_recall 0.00554467 unweighted_pair_F1 0.00978736 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores.unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Finished DETONATE with GFFJ01.1.fa and cbai_transcriptome_v3.0.fa. Running DETONATE with GFFJ01.1.fa and 20200526.P_trituberculatus.Trinity.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.624972 unweighted_nucl_recall 0.129943 unweighted_nucl_F1 0.215152 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.456516 unweighted_pair_recall 0.0923697 unweighted_pair_F1 0.15365 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0.000634376 unweighted_contig_precision 0.00282126 unweighted_contig_F1 0.00103584 Done computing all scores. Finished DETONATE with GFFJ01.1.fa and 20200526.P_trituberculatus.Trinity.fa. Generating checksum for GBXE01.1.fa Finished generating checksum for GBXE01.1.fa Running DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0499591 unweighted_nucl_recall 0.494266 unweighted_nucl_F1 0.0907459 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0114599 unweighted_pair_recall 0.178392 unweighted_pair_F1 0.0215363 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores.unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Finished DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.0.fa. Running DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.5.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.065756 unweighted_nucl_recall 0.385968 unweighted_nucl_F1 0.112368 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.014002 unweighted_pair_recall 0.137292 unweighted_pair_F1 0.0254123 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.5.fa. Running DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.6.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0683026 unweighted_nucl_recall 0.384996 unweighted_nucl_F1 0.116022 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.015142 unweighted_pair_recall 0.127469 unweighted_pair_F1 0.0270686 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.6.fa. Running DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.7.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0536318 unweighted_nucl_recall 0.49472 unweighted_nucl_F1 0.0967726 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0126559 unweighted_pair_recall 0.165393 unweighted_pair_F1 0.0235126 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GBXE01.1.fa and cbai_transcriptome_v1.7.fa. Running DETONATE with GBXE01.1.fa and cbai_transcriptome_v2.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.125076 unweighted_nucl_recall 0.0299416 unweighted_nucl_F1 0.0483168 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0209559 unweighted_pair_recall 0.00907662 unweighted_pair_F1 0.0126669 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... Done computing all scores. unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Finished DETONATE with GBXE01.1.fa and cbai_transcriptome_v2.0.fa. Running DETONATE with GBXE01.1.fa and cbai_transcriptome_v3.0.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.106854 unweighted_nucl_recall 0.0535908 unweighted_nucl_F1 0.0713815 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0189235 unweighted_pair_recall 0.0119274 unweighted_pair_F1 0.0146322 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GBXE01.1.fa and cbai_transcriptome_v3.0.fa. Running DETONATE with GBXE01.1.fa and 20200526.P_trituberculatus.Trinity.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.198156 unweighted_nucl_recall 0.107846 unweighted_nucl_F1 0.139674 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.038883 unweighted_pair_recall 0.0384578 unweighted_pair_F1 0.0386692 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GBXE01.1.fa and 20200526.P_trituberculatus.Trinity.fa. Running DETONATE with GBXE01.1.fa and GFFJ01.1.fa. Reading the sequences... Reading the alignments and extracting intervals... Computing nucleotide precision, recall, and F1 scores... unweighted_nucl_precision 0.0814838 unweighted_nucl_recall 0.209402 unweighted_nucl_F1 0.117317 Computing pair precision, recall, and F1 scores... unweighted_pair_precision 0.0149477 unweighted_pair_recall 0.0707243 unweighted_pair_F1 0.0246793 Computing number of non-N bases... Computing contig precision, recall, and F1 scores... unweighted_contig_recall 0 unweighted_contig_precision 0 unweighted_contig_F1 0 Done computing all scores. Finished DETONATE with GBXE01.1.fa and GFFJ01.1.fa.