diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000192s] #Target sequences to report alignments for: 1 Opening the input file... [0.060487s] Opening the output file... [0.000311s] Loading query sequences... [0.378408s] Masking queries... [0.279727s] Building query seed set... [0.049786s] Algorithm: Double-indexed Building query histograms... [0.058964s] Allocating buffers... [0.0006s] Loading reference sequences... [0.506499s] Masking reference... [0.953508s] Initializing temporary storage... [0.002224s] Building reference histograms... [0.163982s] Allocating buffers... [9.5e-05s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.123604s] Building query seed array... [0.023722s] Computing hash join... [0.040793s] Building seed filter... [0.001309s] Searching alignments... [0.05263s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.147567s] Building query seed array... [0.02731s] Computing hash join... [0.025262s] Building seed filter... [0.001303s] Searching alignments... [0.04748s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.157658s] Building query seed array... [0.037649s] Computing hash join... [0.02612s] Building seed filter... [0.001302s] Searching alignments... [0.046254s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.200057s] Building query seed array... [0.023192s] Computing hash join... [0.024938s] Building seed filter... [0.001319s] Searching alignments... [0.043556s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.116484s] Building query seed array... [0.034s] Computing hash join... [0.026867s] Building seed filter... [0.001266s] Searching alignments... [0.037534s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.164557s] Building query seed array... [0.038549s] Computing hash join... [0.026201s] Building seed filter... [0.001224s] Searching alignments... [0.040715s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.151773s] Building query seed array... [0.041202s] Computing hash join... [0.024392s] Building seed filter... [0.001231s] Searching alignments... [0.03605s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.122456s] Building query seed array... [0.039702s] Computing hash join... [0.024221s] Building seed filter... [0.001261s] Searching alignments... [0.039177s] Deallocating buffers... [0.001416s] Computing alignments... [0.923377s] Deallocating reference... [0.001183s] Loading reference sequences... [4.8e-05s] Deallocating buffers... [0.00029s] Deallocating queries... [0.000384s] Loading query sequences... [2.4e-05s] Closing the input file... [3.1e-05s] Closing the output file... [0.000613s] Closing the database file... [2.2e-05s] Deallocating taxonomy... [9e-06s] Total time = 5.40722s Reported 14709 pairwise alignments, 15103 HSPs. 14709 queries aligned.