diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.11212s] #Target sequences to report alignments for: 1 Opening the input file... [0.060115s] Opening the output file... [0.000435s] Loading query sequences... [3.64912s] Masking queries... [2.68545s] Building query seed set... [0.057207s] Algorithm: Double-indexed Building query histograms... [0.433033s] Allocating buffers... [0.000695s] Loading reference sequences... [3.80978s] Masking reference... [0.665996s] Initializing temporary storage... [0.005591s] Building reference histograms... [0.145435s] Allocating buffers... [0.000474s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.113924s] Building query seed array... [0.275123s] Computing hash join... [0.127692s] Building seed filter... [0.004839s] Searching alignments... [0.236319s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.12099s] Building query seed array... [0.32963s] Computing hash join... [0.111048s] Building seed filter... [0.00459s] Searching alignments... [0.21068s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.125155s] Building query seed array... [0.328007s] Computing hash join... [0.110545s] Building seed filter... [0.004356s] Searching alignments... [0.204226s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.129528s] Building query seed array... [0.336061s] Computing hash join... [0.110568s] Building seed filter... [0.00453s] Searching alignments... [0.20593s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.09159s] Building query seed array... [0.261709s] Computing hash join... [0.109305s] Building seed filter... [0.004551s] Searching alignments... [0.182661s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.115435s] Building query seed array... [0.329572s] Computing hash join... [0.108842s] Building seed filter... [0.004416s] Searching alignments... [0.186603s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.12194s] Building query seed array... [0.330772s] Computing hash join... [0.112075s] Building seed filter... [0.004507s] Searching alignments... [0.178078s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.115093s] Building query seed array... [0.271975s] Computing hash join... [0.108924s] Building seed filter... [0.0047s] Searching alignments... [0.176451s] Deallocating buffers... [0.002736s] Computing alignments... [4.36134s] Deallocating reference... [0.001168s] Loading reference sequences... [4.9e-05s] Deallocating buffers... [0.002892s] Deallocating queries... [0.004908s] Loading query sequences... [2e-05s] Closing the input file... [2.1e-05s] Closing the output file... [0.001061s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [8e-06s] Total time = 21.9251s Reported 64982 pairwise alignments, 66594 HSPs. 64982 queries aligned.