diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.219337s] #Target sequences to report alignments for: 1 Opening the input file... [0.167606s] Opening the output file... [0.00035s] Loading query sequences... [0.660257s] Masking queries... [0.415809s] Building query seed set... [0.045321s] Algorithm: Double-indexed Building query histograms... [0.063695s] Allocating buffers... [0.000584s] Loading reference sequences... [3.85928s] Masking reference... [0.965626s] Initializing temporary storage... [0.003246s] Building reference histograms... [0.171785s] Allocating buffers... [9.7e-05s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.130833s] Building query seed array... [0.048117s] Computing hash join... [0.057501s] Building seed filter... [0.001866s] Searching alignments... [0.070352s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.147294s] Building query seed array... [0.065927s] Computing hash join... [0.030337s] Building seed filter... [0.001819s] Searching alignments... [0.063387s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.226066s] Building query seed array... [0.068981s] Computing hash join... [0.03031s] Building seed filter... [0.00178s] Searching alignments... [0.061386s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.137234s] Building query seed array... [0.033854s] Computing hash join... [0.029807s] Building seed filter... [0.001744s] Searching alignments... [0.058201s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.138258s] Building query seed array... [0.036163s] Computing hash join... [0.030618s] Building seed filter... [0.00174s] Searching alignments... [0.050796s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.146705s] Building query seed array... [0.042522s] Computing hash join... [0.029684s] Building seed filter... [0.00166s] Searching alignments... [0.055386s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.153474s] Building query seed array... [0.043682s] Computing hash join... [0.029968s] Building seed filter... [0.001813s] Searching alignments... [0.895435s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.211915s] Building query seed array... [0.046311s] Computing hash join... [0.032453s] Building seed filter... [0.002077s] Searching alignments... [0.155459s] Deallocating buffers... [0.001376s] Computing alignments... [1.49095s] Deallocating reference... [0.001168s] Loading reference sequences... [4.6e-05s] Deallocating buffers... [0.00045s] Deallocating queries... [0.000615s] Loading query sequences... [2.3e-05s] Closing the input file... [2.4e-05s] Closing the output file... [0.000241s] Closing the database file... [4.1e-05s] Deallocating taxonomy... [1e-05s] Total time = 11.4453s Reported 22869 pairwise alignments, 23481 HSPs. 22869 queries aligned.