WARNING	An augustus species is mentioned in the config file, dataset default species (fly) will be ignored
INFO	****************** Start a BUSCO 3.0.2 analysis, current time: 05/19/2020 05:33:03 ******************
INFO	Configuration loaded from /gscratch/scrubbed/samwhite/outputs/20200519_cbai_busco_transcriptome_v1.6/config.ini
INFO	Init tools...
INFO	Check dependencies...
INFO	Check input file...
INFO	To reproduce this run: python /gscratch/srlab/programs/busco-v3/scripts/run_BUSCO.py -i /gscratch/srlab/sam/data/C_bairdi/transcriptomes/cbai_transcriptome_v1.6.fasta -o 20200519.cbai -l /gscratch/srlab/sam/data/databases/BUSCO/metazoa_odb9/ -m transcriptome -c 28 --long -z
INFO	Mode is: transcriptome
INFO	The lineage dataset is: metazoa_odb9 (eukaryota)
INFO	Temp directory is ./tmp/
INFO	****** Step 1/2, current time: 05/19/2020 05:33:04 ******
INFO	Create blast database...
INFO	[makeblastdb]	Building a new DB, current time: 05/19/2020 05:33:04
INFO	[makeblastdb]	New DB name:   /gscratch/scrubbed/samwhite/outputs/20200519_cbai_busco_transcriptome_v1.6/tmp/20200519.cbai_2192706657
INFO	[makeblastdb]	New DB title:  /gscratch/srlab/sam/data/C_bairdi/transcriptomes/cbai_transcriptome_v1.6.fasta
INFO	[makeblastdb]	Sequence type: Nucleotide
INFO	[makeblastdb]	Keep MBits: T
INFO	[makeblastdb]	Maximum file size: 1000000000B
INFO	[makeblastdb]	Adding sequences from FASTA; added 39946 sequences in 1.01223 seconds.
INFO	[makeblastdb]	1 of 1 task(s) completed at 05/19/2020 05:33:05
INFO	Running tblastn, writing output to /gscratch/scrubbed/samwhite/outputs/20200519_cbai_busco_transcriptome_v1.6/run_20200519.cbai/blast_output/tblastn_20200519.cbai.tsv...
INFO	[tblastn]	1 of 1 task(s) completed at 05/19/2020 05:34:09
INFO	****** Step 2/2, current time: 05/19/2020 05:34:09 ******
INFO	Maximum number of candidate transcript per BUSCO limited to: 3
INFO	Getting coordinates for candidate transcripts...
INFO	Extracting candidate transcripts...
INFO	Translating candidate transcripts...
INFO	Running HMMER to confirm transcript orthology:
INFO	[hmmsearch]	343 of 1711 task(s) completed at 05/19/2020 05:34:20
INFO	[hmmsearch]	1711 of 1711 task(s) completed at 05/19/2020 05:34:24
INFO	Results:
INFO	C:91.7%[S:67.2%,D:24.5%],F:6.1%,M:2.2%,n:978
INFO	897 Complete BUSCOs (C)
INFO	657 Complete and single-copy BUSCOs (S)
INFO	240 Complete and duplicated BUSCOs (D)
INFO	60 Fragmented BUSCOs (F)
INFO	21 Missing BUSCOs (M)
INFO	978 Total BUSCO groups searched
INFO	BUSCO analysis done with WARNING(s). Total running time: 86.21125316619873 seconds
INFO	Results written in /gscratch/scrubbed/samwhite/outputs/20200519_cbai_busco_transcriptome_v1.6/run_20200519.cbai/