WARNING	An augustus species is mentioned in the config file, dataset default species (fly) will be ignored
INFO	****************** Start a BUSCO 3.0.2 analysis, current time: 05/08/2020 06:46:26 ******************
INFO	Configuration loaded from /gscratch/scrubbed/samwhite/outputs/20200508_cbai_busco_transcriptome_v2.0/config.ini
INFO	Init tools...
INFO	Check dependencies...
INFO	Check input file...
INFO	To reproduce this run: python /gscratch/srlab/programs/busco-v3/scripts/run_BUSCO.py -i /gscratch/srlab/sam/data/C_bairdi/transcriptomes/20200507.C_bairdi.Trinity.fasta -o 20200508.cbai -l /gscratch/srlab/sam/data/databases/BUSCO/metazoa_odb9/ -m transcriptome -c 28 --long -z
INFO	Mode is: transcriptome
INFO	The lineage dataset is: metazoa_odb9 (eukaryota)
INFO	Temp directory is ./tmp/
INFO	****** Step 1/2, current time: 05/08/2020 06:46:35 ******
INFO	Create blast database...
INFO	[makeblastdb]	Building a new DB, current time: 05/08/2020 06:46:36
INFO	[makeblastdb]	New DB name:   /gscratch/scrubbed/samwhite/outputs/20200508_cbai_busco_transcriptome_v2.0/tmp/20200508.cbai_1315770908
INFO	[makeblastdb]	New DB title:  /gscratch/srlab/sam/data/C_bairdi/transcriptomes/20200507.C_bairdi.Trinity.fasta
INFO	[makeblastdb]	Sequence type: Nucleotide
INFO	[makeblastdb]	Keep MBits: T
INFO	[makeblastdb]	Maximum file size: 1000000000B
INFO	[makeblastdb]	Adding sequences from FASTA; added 1412254 sequences in 40.982 seconds.
INFO	[makeblastdb]	1 of 1 task(s) completed at 05/08/2020 06:47:17
INFO	Running tblastn, writing output to /gscratch/scrubbed/samwhite/outputs/20200508_cbai_busco_transcriptome_v2.0/run_20200508.cbai/blast_output/tblastn_20200508.cbai.tsv...
INFO	[tblastn]	1 of 1 task(s) completed at 05/08/2020 07:01:11
INFO	****** Step 2/2, current time: 05/08/2020 07:01:12 ******
INFO	Maximum number of candidate transcript per BUSCO limited to: 3
INFO	Getting coordinates for candidate transcripts...
INFO	Extracting candidate transcripts...
INFO	Translating candidate transcripts...
INFO	Running HMMER to confirm transcript orthology:
INFO	[hmmsearch]	552 of 2759 task(s) completed at 05/08/2020 07:04:44
INFO	[hmmsearch]	1380 of 2759 task(s) completed at 05/08/2020 07:04:46
INFO	[hmmsearch]	1932 of 2759 task(s) completed at 05/08/2020 07:04:47
INFO	[hmmsearch]	2208 of 2759 task(s) completed at 05/08/2020 07:04:47
INFO	[hmmsearch]	2759 of 2759 task(s) completed at 05/08/2020 07:04:48
INFO	Results:
INFO	C:98.8%[S:24.9%,D:73.9%],F:0.9%,M:0.3%,n:978
INFO	967 Complete BUSCOs (C)
INFO	244 Complete and single-copy BUSCOs (S)
INFO	723 Complete and duplicated BUSCOs (D)
INFO	9 Fragmented BUSCOs (F)
INFO	2 Missing BUSCOs (M)
INFO	978 Total BUSCO groups searched
INFO	BUSCO analysis done with WARNING(s). Total running time: 1110.0724954605103 seconds
INFO	Results written in /gscratch/scrubbed/samwhite/outputs/20200508_cbai_busco_transcriptome_v2.0/run_20200508.cbai/