uninfected	uninfected_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.113.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.113.D9.uninfected.cold.megan_R2.fq
infected	infected_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.118.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.118.D9.infected.ambient.megan_R2.fq
infected	infected_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.127.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.127.D9.infected.warm.megan_R2.fq
infected	infected_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.132.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.132.D9.infected.ambient.megan_R2.fq
infected	infected_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.151.D9.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.151.D9.infected.cold.megan_R2.fq
infected	infected_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.173.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.173.D9.infected.warm.megan_R2.fq
infected	infected_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.178.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.178.D9.infected.ambient.megan_R2.fq
uninfected	uninfected_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.221.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.221.D12.uninfected.cold.megan_R2.fq
uninfected	uninfected_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.222.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.222.D12.uninfected.cold.megan_R2.fq
infected	infected_07	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.254.D12.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.254.D12.infected.cold.megan_R2.fq
infected	infected_08	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.272.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.272.D12.infected.warm.megan_R2.fq
infected	infected_09	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.280.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.280.D12.infected.warm.megan_R2.fq
infected	infected_10	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.294.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.294.D12.infected.warm.megan_R2.fq
infected	infected_11	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.334.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.334.D12.infected.ambient.megan_R2.fq
infected	infected_12	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.349.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.349.D12.infected.ambient.megan_R2.fq
infected	infected_13	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.359.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.359.D12.infected.ambient.megan_R2.fq
uninfected	uninfected_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.425.D26.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.425.D26.uninfected.cold.megan_R2.fq
uninfected	uninfected_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.427.D26.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.427.D26.uninfected.cold.megan_R2.fq
infected	infected_14	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.445.D26.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.445.D26.infected.cold.megan_R2.fq
infected	infected_15	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.463.D26.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.463.D26.infected.ambient.megan_R2.fq
infected	infected_16	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.481.D26.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.481.D26.infected.ambient.megan_R2.fq
infected	infected_17	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.485.D26.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.485.D26.infected.ambient.megan_R2.fq
infected	infected_18	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.72.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.72.D9.infected.warm.megan_R2.fq
uninfected	uninfected_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.73.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/infected-uninfected/20200413.C_bairdi.73.D9.uninfected.cold.megan_R2.fq