Got 24 samples, and got: 25 data fields.
Header: uninfected_01	infected_01	infected_02	infected_03	infected_04	infected_05	infected_06	uninfected_02	uninfected_03	infected_07	infected_08	infected_09	infected_10	infected_11	infected_12	infected_13	uninfected_04	uninfected_05	infected_14	infected_15	infected_16	infected_17	infected_18	uninfected_06
Next: TRINITY_DN0_c0_g1	1.87	2.00	311.14	1749.31	1307.99	5342.68	1991.08	0.00	0.00	0.00	0.00	0.00	3.39	1.89	2.47	0.00	0.00	0.00	0.00	2.63	0.00	6.13	1.91	1.50

$VAR1 = {
          'uninfected_06' => 24,
          'infected_16' => 21,
          'infected_11' => 14,
          'infected_17' => 22,
          'infected_06' => 7,
          'infected_02' => 3,
          'infected_10' => 13,
          'infected_08' => 11,
          'infected_07' => 10,
          'uninfected_01' => 1,
          'infected_05' => 6,
          'infected_04' => 5,
          'infected_15' => 20,
          'infected_03' => 4,
          'uninfected_03' => 9,
          'infected_09' => 12,
          'infected_18' => 23,
          'infected_12' => 15,
          'infected_14' => 19,
          'uninfected_05' => 18,
          'uninfected_02' => 8,
          'infected_01' => 2,
          'uninfected_04' => 17,
          'infected_13' => 16
        };
Contrasts to perform are: $VAR1 = [
          [
            'infected',
            'uninfected'
          ]
        ];
Loading required package: edgeR
Loading required package: limma