cold	cold_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.113.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.113.D9.uninfected.cold.megan_R2.fq
ambient	ambient_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.118.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.118.D9.infected.ambient.megan_R2.fq
ambient	ambient_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.132.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.132.D9.infected.ambient.megan_R2.fq
cold	cold_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.151.D9.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.151.D9.infected.cold.megan_R2.fq
ambient	ambient_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.178.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.178.D9.infected.ambient.megan_R2.fq
cold	cold_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.221.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.221.D12.uninfected.cold.megan_R2.fq
cold	cold_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.222.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.222.D12.uninfected.cold.megan_R2.fq
cold	cold_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.254.D12.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.254.D12.infected.cold.megan_R2.fq
ambient	ambient_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.334.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.334.D12.infected.ambient.megan_R2.fq
ambient	ambient_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.349.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.349.D12.infected.ambient.megan_R2.fq
ambient	ambient_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.359.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.359.D12.infected.ambient.megan_R2.fq
cold	cold_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.425.D26.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.425.D26.uninfected.cold.megan_R2.fq
cold	cold_07	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.427.D26.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.427.D26.uninfected.cold.megan_R2.fq
cold	cold_08	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.445.D26.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.445.D26.infected.cold.megan_R2.fq
ambient	ambient_07	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.463.D26.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.463.D26.infected.ambient.megan_R2.fq
ambient	ambient_08	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.481.D26.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.481.D26.infected.ambient.megan_R2.fq
ambient	ambient_09	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.485.D26.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.485.D26.infected.ambient.megan_R2.fq
cold	cold_09	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.73.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/ambient-cold/20200413.C_bairdi.73.D9.uninfected.cold.megan_R2.fq