D9	D9_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.113.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.113.D9.uninfected.cold.megan_R2.fq
D9	D9_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.118.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.118.D9.infected.ambient.megan_R2.fq
D9	D9_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.127.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.127.D9.infected.warm.megan_R2.fq
D9	D9_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.132.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.132.D9.infected.ambient.megan_R2.fq
D9	D9_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.151.D9.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.151.D9.infected.cold.megan_R2.fq
D9	D9_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.173.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.173.D9.infected.warm.megan_R2.fq
D9	D9_07	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.178.D9.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.178.D9.infected.ambient.megan_R2.fq
D12	D12_01	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.221.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.221.D12.uninfected.cold.megan_R2.fq
D12	D12_02	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.222.D12.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.222.D12.uninfected.cold.megan_R2.fq
D12	D12_03	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.254.D12.infected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.254.D12.infected.cold.megan_R2.fq
D12	D12_04	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.272.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.272.D12.infected.warm.megan_R2.fq
D12	D12_05	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.280.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.280.D12.infected.warm.megan_R2.fq
D12	D12_06	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.294.D12.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.294.D12.infected.warm.megan_R2.fq
D12	D12_07	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.334.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.334.D12.infected.ambient.megan_R2.fq
D12	D12_08	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.349.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.349.D12.infected.ambient.megan_R2.fq
D12	D12_09	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.359.D12.infected.ambient.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.359.D12.infected.ambient.megan_R2.fq
D9	D9_08	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.72.D9.infected.warm.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.72.D9.infected.warm.megan_R2.fq
D9	D9_09	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.73.D9.uninfected.cold.megan_R1.fq	/gscratch/scrubbed/samwhite/outputs/20200422_cbai_DEG_basic_comparisons/D9-D12/20200413.C_bairdi.73.D9.uninfected.cold.megan_R2.fq