Version   MEGAN Community Edition (version 6.18.3, built 17 Dec 2019)
Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
This is free software, licensed under the terms of the GNU General Public License, Version 3.
Sources available at: https://github.com/danielhuson/megan-ce
Java version: 11.0.5

Opening startup files
Loading ncbi.map: 2,175,506
Loading ncbi.tre: 2,175,510
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200414_cbai_diamond_blastx/380820.daa2rma.rma6';
Info: Opened file '380820.daa2rma.rma6' with 5,441,526 reads
Induced tree has 148 of 2,175,510 nodes
Induced tree has 148 of 2,175,510 nodes
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380820-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2452709
Info: Command completed (235s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380820-reads-%t.fasta' da...
Executing: contract direction=vertical;
Executing: contract direction=horizontal;
Executing: close what=current;
Executing: quit;
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200414_cbai_diamond_blastx/380821.daa2rma.rma6';
Info: Opened file '380821.daa2rma.rma6' with 5,172,806 reads
Induced tree has 160 of 2,175,510 nodes
Induced tree has 160 of 2,175,510 nodes
Executing: contract direction=vertical;
Executing: contract direction=horizontal;
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380821-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2281962
Info: Command completed (227s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380821-reads-%t.fasta' da...
Executing: collapse rank='Phylum';select rank='Phylum';
Induced tree has 160 of 2,175,510 nodes
Induced tree has 160 of 2,175,510 nodes
Executing: collapse rank='Class';select rank='Class';
Induced tree has 160 of 2,175,510 nodes
Induced tree has 160 of 2,175,510 nodes
Executing: uncollapse nodes=selected;
Induced tree has 160 of 2,175,510 nodes
Induced tree has 160 of 2,175,510 nodes
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380821-reads-%t.fasta' data=Taxonomy ids= 33630 allBelow=true;
Info: Number of reads written: 13583
Executing: close what=current;
Executing: quit;
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200414_cbai_diamond_blastx/380822.daa2rma.rma6';
Info: Opened file '380822.daa2rma.rma6' with 5,131,242 reads
Induced tree has 155 of 2,175,510 nodes
Induced tree has 155 of 2,175,510 nodes
Executing: contract direction=vertical;
Executing: contract direction=horizontal;
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380821-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2360729
Info: Command completed (226s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380821-reads-%t.fasta' da...
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380822-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2360729
Info: Command completed (130s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380822-reads-%t.fasta' da...
Executing: open file='/media/sam/toaster/20200414_cbai_diamond_blastx/380821.daa2rma.rma6';
Executing: 'open''file''=''/media/sam/toaster/20200414_cbai_diamond_blastx/380821.daa2rma.rma6';
Info: Opened file '380821.daa2rma.rma6' with 5,172,806 reads
Induced tree has 160 of 2,175,510 nodes
Induced tree has 160 of 2,175,510 nodes
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380821-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2281962
Info: Command completed (127s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380821-reads-%t.fasta' da...
Executing: close what=current;
Executing: close what=current;
Executing: quit;
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200414_cbai_diamond_blastx/380823.daa2rma.rma6';
Info: Opened file '380823.daa2rma.rma6' with 4,691,047 reads
Induced tree has 178 of 2,175,510 nodes
Induced tree has 178 of 2,175,510 nodes
Executing: contract direction=vertical;
Executing: contract direction=horizontal;
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380823-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2135891
Info: Command completed (185s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380823-reads-%t.fasta' da...
Executing: collapse nodes=selected;
Induced tree has 178 of 2,175,510 nodes
Induced tree has 178 of 2,175,510 nodes
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380823-reads-%t.fasta' data=Taxonomy ids= 33630 allBelow=true;
Info: Number of reads written: 26182
Executing: close what=current;
Executing: quit;
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200414_cbai_diamond_blastx/380824.daa2rma.rma6';
Info: Opened file '380824.daa2rma.rma6' with 5,608,268 reads
Induced tree has 158 of 2,175,510 nodes
Induced tree has 158 of 2,175,510 nodes
Executing: contract direction=vertical;
Executing: contract direction=horizontal;
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380824-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2729727
Info: Command completed (190s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380824-reads-%t.fasta' da...
Executing: close what=current;
Executing: quit;
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200414_cbai_diamond_blastx/380825.daa2rma.rma6';
Info: Opened file '380825.daa2rma.rma6' with 5,697,663 reads
Induced tree has 173 of 2,175,510 nodes
Induced tree has 173 of 2,175,510 nodes
Executing: contract direction=vertical;
Executing: contract direction=horizontal;
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380825-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 2563308
Info: Command completed (186s): extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380825-reads-%t.fasta' da...
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/media/sam/toaster/20200414_cbai_diamond_blastx' outfile='20200419_cbai_380825-reads-%t.fasta' data=Taxonomy ids= 33630 allBelow=true;
Info: Number of reads written: 64415
Executing: close what=current;
Executing: quit;
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: close what=current;
Executing: quit;
Induced tree has 2,175,510 of 2,175,510 nodes