diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000135s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.040922s] Opening the output file... [0.000433s] Loading query sequences... [20.3368s] Masking queries... [22.3778s] Building query seed set... [0.123086s] Algorithm: Double-indexed Building query histograms... [0.759277s] Allocating buffers... [0.001063s] Loading reference sequences... [39.8569s] Masking reference... [57.9896s] Initializing temporary storage... [0.015385s] Building reference histograms... [9.9851s] Allocating buffers... [0.00045s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [68.9862s] Building query seed array... [1.33616s] Computing hash join... [34.6725s] Building seed filter... [0.087937s] Searching alignments... [88.0462s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [9.43606s] Building query seed array... [0.751017s] Computing hash join... [3.09986s] Building seed filter... [0.059089s] Searching alignments... [56.7368s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.6816s] Building query seed array... [0.615862s] Computing hash join... [4.29555s] Building seed filter... [0.055331s] Searching alignments... [50.3023s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.86091s] Building query seed array... [0.586955s] Computing hash join... [3.15287s] Building seed filter... [0.059166s] Searching alignments... [45.2072s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.95531s] Building query seed array... [0.523058s] Computing hash join... [3.40827s] Building seed filter... [0.027742s] Searching alignments... [78.5333s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [10.8687s] Building query seed array... [0.628128s] Computing hash join... [3.22022s] Building seed filter... [0.030759s] Searching alignments... [34.8979s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [10.2758s] Building query seed array... [0.550614s] Computing hash join... [4.3305s] Building seed filter... [0.028963s] Searching alignments... [41.7098s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.68357s] Building query seed array... [0.487096s] Computing hash join... [3.63456s] Building seed filter... [0.052214s] Searching alignments... [34.5815s] Deallocating buffers... [4.49006s] Opening temporary output file... [0.001128s] Computing alignments... [268.985s] Deallocating reference... [1.71192s] Loading reference sequences... [52.5402s] Masking reference... [58.7804s] Initializing temporary storage... [0.007551s] Building reference histograms... [9.36371s] Allocating buffers... [0.000475s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [7.62657s] Building query seed array... [0.525728s] Computing hash join... [5.85912s] Building seed filter... [0.120792s] Searching alignments... [54.3714s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.8306s] Building query seed array... [0.685484s] Computing hash join... [5.6802s] Building seed filter... [0.071864s] Searching alignments... [41.6052s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [10.844s] Building query seed array... [0.685648s] Computing hash join... [6.42318s] Building seed filter... [0.081767s] Searching alignments... [37.3242s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.03781s] Building query seed array... [0.575551s] Computing hash join... [5.55591s] Building seed filter... [0.072457s] Searching alignments... [31.9773s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.10588s] Building query seed array... [0.465064s] Computing hash join... [6.69904s] Building seed filter... [0.048206s] Searching alignments... [33.9664s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [10.7955s] Building query seed array... [0.578714s] Computing hash join... [7.28394s] Building seed filter... [0.058443s] Searching alignments... [26.0064s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.1699s] Building query seed array... [0.562781s] Computing hash join... [7.6663s] Building seed filter... [0.040086s] Searching alignments... [27.7894s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.60032s] Building query seed array... [0.501072s] Computing hash join... [6.04564s] Building seed filter... [0.028942s] Searching alignments... [23.0347s] Deallocating buffers... [4.43388s] Opening temporary output file... [0.001147s] Computing alignments... [206.065s] Deallocating reference... [1.70449s] Loading reference sequences... [465.841s] Masking reference... [49.4314s] Initializing temporary storage... [0.005618s] Building reference histograms... [8.58453s] Allocating buffers... [0.001221s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [7.27463s] Building query seed array... [0.558106s] Computing hash join... [5.9406s] Building seed filter... [0.115376s] Searching alignments... [66.7408s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.3386s] Building query seed array... [0.678723s] Computing hash join... [7.22043s] Building seed filter... [0.043466s] Searching alignments... [50.1718s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [10.2299s] Building query seed array... [0.722724s] Computing hash join... [6.78981s] Building seed filter... [0.047947s] Searching alignments... [45.7421s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.55307s] Building query seed array... [0.572638s] Computing hash join... [6.20248s] Building seed filter... [0.031403s] Searching alignments... [41.4797s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.41532s] Building query seed array... [0.528433s] Computing hash join... [5.87948s] Building seed filter... [0.02696s] Searching alignments... [71.7824s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [10.2199s] Building query seed array... [0.628998s] Computing hash join... [6.14389s] Building seed filter... [0.027787s] Searching alignments... [34.5306s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.97111s] Building query seed array... [0.56349s] Computing hash join... [6.69015s] Building seed filter... [0.046821s] Searching alignments... [48.1052s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [8.49631s] Building query seed array... [0.51707s] Computing hash join... [5.68639s] Building seed filter... [0.064142s] Searching alignments... [27.7537s] Deallocating buffers... [4.13579s] Opening temporary output file... [0.003586s] Computing alignments... [256.848s] Deallocating reference... [1.61437s] Loading reference sequences... [429.672s] Masking reference... [49.7132s] Initializing temporary storage... [0.004458s] Building reference histograms... [10.2857s] Allocating buffers... [0.001079s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [7.94112s] Building query seed array... [0.563041s] Computing hash join... [6.53567s] Building seed filter... [0.15924s] Searching alignments... [42.7761s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.5468s] Building query seed array... [0.621698s] Computing hash join... [7.10871s] Building seed filter... [0.053874s] Searching alignments... [41.9588s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [10.6747s] Building query seed array... [0.664763s] Computing hash join... [6.25587s] Building seed filter... [0.029063s] Searching alignments... [29.4193s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.80951s] Building query seed array... [0.522405s] Computing hash join... [7.16461s] Building seed filter... [0.04651s] Searching alignments... [30.0597s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.69416s] Building query seed array... [0.444458s] Computing hash join... [7.56712s] Building seed filter... [0.06521s] Searching alignments... [40.4349s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.15923s] Building query seed array... [0.590744s] Computing hash join... [7.48134s] Building seed filter... [0.058312s] Searching alignments... [19.4654s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [10.1384s] Building query seed array... [0.550591s] Computing hash join... [7.0347s] Building seed filter... [0.04269s] Searching alignments... [38.2633s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.54792s] Building query seed array... [0.502352s] Computing hash join... [6.06023s] Building seed filter... [0.027578s] Searching alignments... [19.3178s] Deallocating buffers... [4.24445s] Opening temporary output file... [0.001247s] Computing alignments... [180.848s] Deallocating reference... [1.50355s] Loading reference sequences... [36.6845s] Masking reference... [57.9158s] Initializing temporary storage... [0.004802s] Building reference histograms... [8.54662s] Allocating buffers... [0.001059s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [7.37961s] Building query seed array... [0.589035s] Computing hash join... [8.01011s] Building seed filter... [0.077229s] Searching alignments... [46.0058s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.9698s] Building query seed array... [0.651034s] Computing hash join... [6.2185s] Building seed filter... [0.031576s] Searching alignments... [34.199s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.5592s] Building query seed array... [0.720446s] Computing hash join... [6.19276s] Building seed filter... [0.029992s] Searching alignments... [30.1444s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.00687s] Building query seed array... [0.525192s] Computing hash join... [7.84336s] Building seed filter... [0.030964s] Searching alignments... [28.3675s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.40922s] Building query seed array... [0.515493s] Computing hash join... [6.09719s] Building seed filter... [0.079559s] Searching alignments... [33.0556s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [10.4055s] Building query seed array... [0.606039s] Computing hash join... [6.04246s] Building seed filter... [0.029807s] Searching alignments... [24.4347s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [10.5288s] Building query seed array... [0.560675s] Computing hash join... [7.54607s] Building seed filter... [0.037995s] Searching alignments... [24.5997s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.57507s] Building query seed array... [0.476435s] Computing hash join... [6.07253s] Building seed filter... [0.045867s] Searching alignments... [18.6272s] Deallocating buffers... [4.181s] Opening temporary output file... [0.001162s] Computing alignments... [170.1s] Deallocating reference... [1.51911s] Loading reference sequences... [13.991s] Masking reference... [18.4053s] Initializing temporary storage... [0.003285s] Building reference histograms... [3.21797s] Allocating buffers... [0.000488s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.41176s] Building query seed array... [0.527479s] Computing hash join... [2.17852s] Building seed filter... [0.042952s] Searching alignments... [23.3571s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.117s] Building query seed array... [0.647886s] Computing hash join... [1.96193s] Building seed filter... [0.028535s] Searching alignments... [17.1948s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.60332s] Building query seed array... [0.631679s] Computing hash join... [1.75206s] Building seed filter... [0.04613s] Searching alignments... [14.2761s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.83494s] Building query seed array... [0.597391s] Computing hash join... [1.61577s] Building seed filter... [0.018227s] Searching alignments... [14.1741s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.86735s] Building query seed array... [0.46067s] Computing hash join... [1.88328s] Building seed filter... [0.02803s] Searching alignments... [25.0282s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.50184s] Building query seed array... [0.599977s] Computing hash join... [1.52613s] Building seed filter... [0.017324s] Searching alignments... [10.0472s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.53399s] Building query seed array... [0.552776s] Computing hash join... [1.61803s] Building seed filter... [0.017235s] Searching alignments... [14.0194s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.96511s] Building query seed array... [0.505092s] Computing hash join... [1.90576s] Building seed filter... [0.032832s] Searching alignments... [11.4417s] Deallocating buffers... [1.35937s] Opening temporary output file... [0.001467s] Computing alignments... [93.345s] Deallocating reference... [0.27235s] Loading reference sequences... [4.1e-05s] Deallocating buffers... [0.30738s] Joining output blocks... [243.072s] Deallocating queries... [0.179465s] Loading query sequences... [2.7e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.463215s] Closing the database file... [6.9e-05s] Deallocating taxonomy... [3.1e-05s] Total time = 5375.91s Reported 2061792411 pairwise alignments, 2061823886 HSPs. 2763521 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.080058s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.078729s] Opening the output file... [0.001s] Loading query sequences... [20.5159s] Masking queries... [21.6036s] Building query seed set... [0.12913s] Algorithm: Double-indexed Building query histograms... [0.760702s] Allocating buffers... [0.001037s] Loading reference sequences... [500.434s] Masking reference... [50.4879s] Initializing temporary storage... [0.005436s] Building reference histograms... [9.7545s] Allocating buffers... [0.000452s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.51359s] Building query seed array... [0.433358s] Computing hash join... [5.67321s] Building seed filter... [0.097245s] Searching alignments... [76.5007s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.6089s] Building query seed array... [0.785383s] Computing hash join... [6.54492s] Building seed filter... [0.040705s] Searching alignments... [55.472s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.36467s] Building query seed array... [0.677368s] Computing hash join... [6.70332s] Building seed filter... [0.046395s] Searching alignments... [51.3514s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.25598s] Building query seed array... [0.500961s] Computing hash join... [7.09048s] Building seed filter... [0.02921s] Searching alignments... [40.0221s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.12113s] Building query seed array... [0.480489s] Computing hash join... [6.98654s] Building seed filter... [0.038161s] Searching alignments... [67.499s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.29501s] Building query seed array... [0.574676s] Computing hash join... [7.19483s] Building seed filter... [0.046944s] Searching alignments... [30.5435s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.4933s] Building query seed array... [0.566466s] Computing hash join... [6.93792s] Building seed filter... [0.037472s] Searching alignments... [38.1417s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.81983s] Building query seed array... [0.472071s] Computing hash join... [5.70596s] Building seed filter... [0.05699s] Searching alignments... [33.5531s] Deallocating buffers... [3.31289s] Opening temporary output file... [0.000647s] Computing alignments... [242.615s] Deallocating reference... [0.427495s] Loading reference sequences... [480.355s] Masking reference... [48.6213s] Initializing temporary storage... [0.006273s] Building reference histograms... [8.64067s] Allocating buffers... [0.00105s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.48014s] Building query seed array... [0.484716s] Computing hash join... [6.65342s] Building seed filter... [0.068241s] Searching alignments... [52.3529s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [10.4186s] Building query seed array... [0.63834s] Computing hash join... [6.15078s] Building seed filter... [0.03305s] Searching alignments... [41.056s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.58956s] Building query seed array... [0.64707s] Computing hash join... [5.82368s] Building seed filter... [0.033541s] Searching alignments... [38.4765s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.2041s] Building query seed array... [0.557655s] Computing hash join... [6.0687s] Building seed filter... [0.031318s] Searching alignments... [29.4156s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.79269s] Building query seed array... [0.475812s] Computing hash join... [6.55297s] Building seed filter... [0.03808s] Searching alignments... [28.8489s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.06068s] Building query seed array... [0.578869s] Computing hash join... [5.86222s] Building seed filter... [0.030516s] Searching alignments... [21.6834s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.50225s] Building query seed array... [0.568323s] Computing hash join... [6.1412s] Building seed filter... [0.064991s] Searching alignments... [26.7027s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.33494s] Building query seed array... [0.46712s] Computing hash join... [6.52428s] Building seed filter... [0.05662s] Searching alignments... [23.7698s] Deallocating buffers... [3.25677s] Opening temporary output file... [0.0009s] Computing alignments... [168.672s] Deallocating reference... [0.522855s] Loading reference sequences... [468.187s] Masking reference... [48.6871s] Initializing temporary storage... [0.005353s] Building reference histograms... [8.72438s] Allocating buffers... [0.001051s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.48655s] Building query seed array... [0.52781s] Computing hash join... [6.56159s] Building seed filter... [0.056854s] Searching alignments... [67.1113s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.4648s] Building query seed array... [0.643084s] Computing hash join... [7.39751s] Building seed filter... [0.031905s] Searching alignments... [48.3264s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.78439s] Building query seed array... [0.662526s] Computing hash join... [5.90064s] Building seed filter... [0.032418s] Searching alignments... [48.8036s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.76308s] Building query seed array... [0.528732s] Computing hash join... [5.71922s] Building seed filter... [0.072142s] Searching alignments... [34.6506s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.16905s] Building query seed array... [0.460345s] Computing hash join... [5.94898s] Building seed filter... [0.0279s] Searching alignments... [56.5291s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.79844s] Building query seed array... [0.567094s] Computing hash join... [6.49109s] Building seed filter... [0.048124s] Searching alignments... [29.0913s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.24667s] Building query seed array... [0.573455s] Computing hash join... [5.94074s] Building seed filter... [0.028468s] Searching alignments... [32.7833s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.64178s] Building query seed array... [0.472357s] Computing hash join... [6.65419s] Building seed filter... [0.044604s] Searching alignments... [30.3769s] Deallocating buffers... [3.52098s] Opening temporary output file... [0.000702s] Computing alignments... [223.156s] Deallocating reference... [0.63184s] Loading reference sequences... [35.0921s] Masking reference... [48.893s] Initializing temporary storage... [0.005668s] Building reference histograms... [8.70711s] Allocating buffers... [0.001013s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.71566s] Building query seed array... [0.494014s] Computing hash join... [6.22679s] Building seed filter... [0.083274s] Searching alignments... [40.8511s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.8832s] Building query seed array... [0.659814s] Computing hash join... [7.12099s] Building seed filter... [0.029874s] Searching alignments... [38.7542s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.81766s] Building query seed array... [0.612138s] Computing hash join... [6.92376s] Building seed filter... [0.048374s] Searching alignments... [31.4127s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.51794s] Building query seed array... [0.527031s] Computing hash join... [7.06425s] Building seed filter... [0.028926s] Searching alignments... [25.101s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.06684s] Building query seed array... [0.481896s] Computing hash join... [5.87745s] Building seed filter... [0.032147s] Searching alignments... [32.035s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.47394s] Building query seed array... [0.569757s] Computing hash join... [6.46195s] Building seed filter... [0.047067s] Searching alignments... [26.6252s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.09439s] Building query seed array... [0.578447s] Computing hash join... [6.64478s] Building seed filter... [0.05622s] Searching alignments... [38.0222s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [6.85612s] Building query seed array... [0.467959s] Computing hash join... [5.92364s] Building seed filter... [0.06352s] Searching alignments... [25.5447s] Deallocating buffers... [3.67721s] Opening temporary output file... [0.000774s] Computing alignments... [161.813s] Deallocating reference... [0.577983s] Loading reference sequences... [394.859s] Masking reference... [49.0413s] Initializing temporary storage... [0.005742s] Building reference histograms... [8.82752s] Allocating buffers... [0.001046s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.52304s] Building query seed array... [0.53537s] Computing hash join... [5.6319s] Building seed filter... [0.098691s] Searching alignments... [43.0387s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.4867s] Building query seed array... [0.606778s] Computing hash join... [6.72191s] Building seed filter... [0.038341s] Searching alignments... [31.4793s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.2395s] Building query seed array... [0.686404s] Computing hash join... [5.68806s] Building seed filter... [0.070226s] Searching alignments... [33.5421s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.54004s] Building query seed array... [0.521497s] Computing hash join... [5.72318s] Building seed filter... [0.032029s] Searching alignments... [23.2073s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.53919s] Building query seed array... [0.481633s] Computing hash join... [6.09039s] Building seed filter... [0.064526s] Searching alignments... [27.6294s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.2387s] Building query seed array... [0.552753s] Computing hash join... [5.92698s] Building seed filter... [0.030165s] Searching alignments... [19.3893s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [10.2681s] Building query seed array... [0.574142s] Computing hash join... [5.92234s] Building seed filter... [0.062663s] Searching alignments... [21.2255s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.35774s] Building query seed array... [0.471451s] Computing hash join... [6.92147s] Building seed filter... [0.061832s] Searching alignments... [19.7047s] Deallocating buffers... [3.7558s] Opening temporary output file... [0.00444s] Computing alignments... [148.442s] Deallocating reference... [0.615328s] Loading reference sequences... [14.9354s] Masking reference... [18.7473s] Initializing temporary storage... [0.00243s] Building reference histograms... [3.16023s] Allocating buffers... [0.000446s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.3864s] Building query seed array... [0.556155s] Computing hash join... [1.13829s] Building seed filter... [0.019641s] Searching alignments... [22.5243s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.6341s] Building query seed array... [0.623791s] Computing hash join... [1.15209s] Building seed filter... [0.017326s] Searching alignments... [16.3653s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.13658s] Building query seed array... [0.666477s] Computing hash join... [1.06258s] Building seed filter... [0.01911s] Searching alignments... [15.6958s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.60317s] Building query seed array... [0.546724s] Computing hash join... [1.04845s] Building seed filter... [0.018121s] Searching alignments... [11.8869s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.3648s] Building query seed array... [0.465818s] Computing hash join... [0.954389s] Building seed filter... [0.023119s] Searching alignments... [19.7643s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.19535s] Building query seed array... [0.557415s] Computing hash join... [1.2024s] Building seed filter... [0.017208s] Searching alignments... [8.54525s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.14729s] Building query seed array... [0.52144s] Computing hash join... [1.20306s] Building seed filter... [0.023196s] Searching alignments... [11.2523s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.3396s] Building query seed array... [0.495355s] Computing hash join... [1.13108s] Building seed filter... [0.017225s] Searching alignments... [9.03009s] Deallocating buffers... [0.46814s] Opening temporary output file... [0.010948s] Computing alignments... [78.1489s] Deallocating reference... [0.028833s] Loading reference sequences... [0.039468s] Deallocating buffers... [0.255933s] Joining output blocks... [213.814s] Deallocating queries... [0.017932s] Loading query sequences... [1.9e-05s] Closing the input file... [2.8e-05s] Closing the output file... [0.443933s] Closing the database file... [9.6e-05s] Deallocating taxonomy... [3e-05s] Total time = 5761.95s Reported 1925352866 pairwise alignments, 1925381640 HSPs. 2678005 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.063866s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.058375s] Opening the output file... [0.000437s] Loading query sequences... [20.2516s] Masking queries... [33.6795s] Building query seed set... [0.130609s] Algorithm: Double-indexed Building query histograms... [0.801426s] Allocating buffers... [0.001147s] Loading reference sequences... [525.518s] Masking reference... [49.5936s] Initializing temporary storage... [0.002911s] Building reference histograms... [9.48778s] Allocating buffers... [0.000157s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.49733s] Building query seed array... [0.439324s] Computing hash join... [6.95639s] Building seed filter... [0.068449s] Searching alignments... [74.7512s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.8422s] Building query seed array... [0.76641s] Computing hash join... [6.73468s] Building seed filter... [0.041304s] Searching alignments... [57.2218s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.48831s] Building query seed array... [0.580252s] Computing hash join... [7.06174s] Building seed filter... [0.065074s] Searching alignments... [49.2534s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.64563s] Building query seed array... [0.49419s] Computing hash join... [5.62447s] Building seed filter... [0.030801s] Searching alignments... [45.6451s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.31675s] Building query seed array... [0.473316s] Computing hash join... [5.61973s] Building seed filter... [0.026297s] Searching alignments... [81.5995s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.89684s] Building query seed array... [0.541674s] Computing hash join... [5.53486s] Building seed filter... [0.069827s] Searching alignments... [33.6345s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.47141s] Building query seed array... [0.561403s] Computing hash join... [6.27715s] Building seed filter... [0.042236s] Searching alignments... [41.1458s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.66431s] Building query seed array... [0.479206s] Computing hash join... [6.25909s] Building seed filter... [0.038025s] Searching alignments... [33.6265s] Deallocating buffers... [3.52074s] Opening temporary output file... [0.000717s] Computing alignments... [257.553s] Deallocating reference... [0.282286s] Loading reference sequences... [489.513s] Masking reference... [49.5747s] Initializing temporary storage... [0.004671s] Building reference histograms... [8.50165s] Allocating buffers... [0.001065s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.52612s] Building query seed array... [0.526054s] Computing hash join... [5.35384s] Building seed filter... [0.080967s] Searching alignments... [52.4703s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.5822s] Building query seed array... [0.63338s] Computing hash join... [7.23042s] Building seed filter... [0.059691s] Searching alignments... [42.0169s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.72085s] Building query seed array... [0.604445s] Computing hash join... [6.0369s] Building seed filter... [0.030466s] Searching alignments... [36.3695s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.69222s] Building query seed array... [0.550175s] Computing hash join... [6.50986s] Building seed filter... [0.044199s] Searching alignments... [30.8596s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.27595s] Building query seed array... [0.470116s] Computing hash join... [7.12673s] Building seed filter... [0.039998s] Searching alignments... [33.2278s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.89696s] Building query seed array... [0.557364s] Computing hash join... [5.76836s] Building seed filter... [0.061318s] Searching alignments... [25.0709s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.39689s] Building query seed array... [0.551365s] Computing hash join... [7.01497s] Building seed filter... [0.060935s] Searching alignments... [27.824s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.50981s] Building query seed array... [0.466546s] Computing hash join... [6.55612s] Building seed filter... [0.054541s] Searching alignments... [23.1831s] Deallocating buffers... [3.47781s] Opening temporary output file... [0.000866s] Computing alignments... [182.23s] Deallocating reference... [0.375001s] Loading reference sequences... [519.158s] Masking reference... [49.6402s] Initializing temporary storage... [0.006508s] Building reference histograms... [9.14258s] Allocating buffers... [0.00045s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.50521s] Building query seed array... [0.488026s] Computing hash join... [7.59204s] Building seed filter... [0.065688s] Searching alignments... [68.3025s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.1936s] Building query seed array... [0.619219s] Computing hash join... [7.07491s] Building seed filter... [0.057765s] Searching alignments... [48.6484s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [10.1067s] Building query seed array... [0.621605s] Computing hash join... [5.8378s] Building seed filter... [0.038723s] Searching alignments... [43.9435s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.97908s] Building query seed array... [0.512546s] Computing hash join... [5.72048s] Building seed filter... [0.02967s] Searching alignments... [41.0907s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.13261s] Building query seed array... [0.474651s] Computing hash join... [5.68601s] Building seed filter... [0.026902s] Searching alignments... [71.8855s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.86541s] Building query seed array... [0.552143s] Computing hash join... [5.7185s] Building seed filter... [0.068849s] Searching alignments... [33.3543s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.52464s] Building query seed array... [0.563499s] Computing hash join... [5.92621s] Building seed filter... [0.028643s] Searching alignments... [36.2503s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.64279s] Building query seed array... [0.475552s] Computing hash join... [6.68026s] Building seed filter... [0.055073s] Searching alignments... [27.3032s] Deallocating buffers... [3.67s] Opening temporary output file... [0.000865s] Computing alignments... [248.683s] Deallocating reference... [0.398836s] Loading reference sequences... [462.673s] Masking reference... [49.6005s] Initializing temporary storage... [0.005471s] Building reference histograms... [8.58927s] Allocating buffers... [0.001018s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.44661s] Building query seed array... [0.50467s] Computing hash join... [6.7774s] Building seed filter... [0.110427s] Searching alignments... [41.7812s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3852s] Building query seed array... [0.650872s] Computing hash join... [7.2135s] Building seed filter... [0.029034s] Searching alignments... [42.2782s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.83133s] Building query seed array... [0.63683s] Computing hash join... [6.18175s] Building seed filter... [0.028775s] Searching alignments... [28.654s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.49031s] Building query seed array... [0.520343s] Computing hash join... [7.28582s] Building seed filter... [0.04026s] Searching alignments... [30.8968s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.24531s] Building query seed array... [0.476939s] Computing hash join... [5.50941s] Building seed filter... [0.027533s] Searching alignments... [40.2112s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.42776s] Building query seed array... [0.57681s] Computing hash join... [5.7034s] Building seed filter... [0.027667s] Searching alignments... [18.6745s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.54898s] Building query seed array... [0.556667s] Computing hash join... [6.28736s] Building seed filter... [0.054151s] Searching alignments... [38.8527s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.93737s] Building query seed array... [0.479247s] Computing hash join... [5.75132s] Building seed filter... [0.070763s] Searching alignments... [18.5696s] Deallocating buffers... [3.62441s] Opening temporary output file... [0.000755s] Computing alignments... [168.569s] Deallocating reference... [0.350494s] Loading reference sequences... [456.67s] Masking reference... [49.6423s] Initializing temporary storage... [0.004508s] Building reference histograms... [8.70515s] Allocating buffers... [0.001074s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.49189s] Building query seed array... [0.499762s] Computing hash join... [5.5341s] Building seed filter... [0.047081s] Searching alignments... [44.1418s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [13.1092s] Building query seed array... [0.615555s] Computing hash join... [6.03749s] Building seed filter... [0.051114s] Searching alignments... [33.4895s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.54464s] Building query seed array... [0.618379s] Computing hash join... [5.77358s] Building seed filter... [0.030333s] Searching alignments... [29.7805s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.72082s] Building query seed array... [0.603228s] Computing hash join... [6.92253s] Building seed filter... [0.060771s] Searching alignments... [27.8227s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.29247s] Building query seed array... [0.478367s] Computing hash join... [5.78982s] Building seed filter... [0.073497s] Searching alignments... [33.2726s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.49513s] Building query seed array... [0.54577s] Computing hash join... [6.10416s] Building seed filter... [0.028247s] Searching alignments... [22.9202s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [10.0765s] Building query seed array... [0.569665s] Computing hash join... [6.48835s] Building seed filter... [0.063503s] Searching alignments... [24.0101s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.25856s] Building query seed array... [0.461145s] Computing hash join... [6.71275s] Building seed filter... [0.055148s] Searching alignments... [17.6672s] Deallocating buffers... [3.7991s] Opening temporary output file... [0.000639s] Computing alignments... [160.52s] Deallocating reference... [0.390394s] Loading reference sequences... [198.515s] Masking reference... [18.2655s] Initializing temporary storage... [0.004273s] Building reference histograms... [3.18126s] Allocating buffers... [0.000442s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.35944s] Building query seed array... [0.558831s] Computing hash join... [1.16593s] Building seed filter... [0.024232s] Searching alignments... [22.0281s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.43486s] Building query seed array... [0.634187s] Computing hash join... [1.2662s] Building seed filter... [0.018535s] Searching alignments... [16.8652s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.14522s] Building query seed array... [0.630491s] Computing hash join... [1.19318s] Building seed filter... [0.018128s] Searching alignments... [13.9569s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.49559s] Building query seed array... [0.528385s] Computing hash join... [1.13609s] Building seed filter... [0.020054s] Searching alignments... [14.6508s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.33555s] Building query seed array... [0.5802s] Computing hash join... [1.02682s] Building seed filter... [0.016147s] Searching alignments... [25.1241s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.16498s] Building query seed array... [0.559774s] Computing hash join... [1.01865s] Building seed filter... [0.016476s] Searching alignments... [9.88549s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.17001s] Building query seed array... [0.559817s] Computing hash join... [0.948753s] Building seed filter... [0.017074s] Searching alignments... [13.2192s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.35807s] Building query seed array... [0.470541s] Computing hash join... [1.13315s] Building seed filter... [0.016627s] Searching alignments... [10.6839s] Deallocating buffers... [0.351627s] Opening temporary output file... [0.003099s] Computing alignments... [85.8831s] Deallocating reference... [0.028715s] Loading reference sequences... [0.027967s] Deallocating buffers... [0.255834s] Joining output blocks... [244.677s] Deallocating queries... [0.018826s] Loading query sequences... [2.2e-05s] Closing the input file... [3.1e-05s] Closing the output file... [0.393895s] Closing the database file... [6.9e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 6727.99s Reported 2064160031 pairwise alignments, 2064191448 HSPs. 2766742 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.136663s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.170707s] Opening the output file... [0.000466s] Loading query sequences... [20.5744s] Masking queries... [22.201s] Building query seed set... [0.128154s] Algorithm: Double-indexed Building query histograms... [0.784073s] Allocating buffers... [0.001076s] Loading reference sequences... [538.092s] Masking reference... [50.4432s] Initializing temporary storage... [0.003388s] Building reference histograms... [9.07184s] Allocating buffers... [0.00048s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.50113s] Building query seed array... [0.433678s] Computing hash join... [5.93723s] Building seed filter... [0.099817s] Searching alignments... [77.2198s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.4095s] Building query seed array... [0.779051s] Computing hash join... [6.42996s] Building seed filter... [0.034405s] Searching alignments... [56.7562s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.45922s] Building query seed array... [0.601385s] Computing hash join... [5.63295s] Building seed filter... [0.062677s] Searching alignments... [51.9892s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.39484s] Building query seed array... [0.518387s] Computing hash join... [6.31815s] Building seed filter... [0.046813s] Searching alignments... [40.5013s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.42345s] Building query seed array... [0.501673s] Computing hash join... [5.4616s] Building seed filter... [0.045796s] Searching alignments... [65.6192s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.50766s] Building query seed array... [0.55439s] Computing hash join... [6.98134s] Building seed filter... [0.030953s] Searching alignments... [30.3224s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.18487s] Building query seed array... [0.5867s] Computing hash join... [6.96548s] Building seed filter... [0.05225s] Searching alignments... [37.9502s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.62168s] Building query seed array... [0.474825s] Computing hash join... [5.63548s] Building seed filter... [0.05987s] Searching alignments... [34.2056s] Deallocating buffers... [3.26472s] Opening temporary output file... [0.000854s] Computing alignments... [245.493s] Deallocating reference... [0.400673s] Loading reference sequences... [526.89s] Masking reference... [48.621s] Initializing temporary storage... [0.004474s] Building reference histograms... [9.21801s] Allocating buffers... [0.001088s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.41822s] Building query seed array... [0.526961s] Computing hash join... [5.38077s] Building seed filter... [0.086911s] Searching alignments... [53.5566s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3937s] Building query seed array... [0.636557s] Computing hash join... [7.03092s] Building seed filter... [0.06035s] Searching alignments... [41.679s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.56348s] Building query seed array... [0.653566s] Computing hash join... [6.102s] Building seed filter... [0.033526s] Searching alignments... [39.7579s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.7748s] Building query seed array... [0.542318s] Computing hash join... [5.96974s] Building seed filter... [0.03406s] Searching alignments... [28.804s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.10935s] Building query seed array... [0.471774s] Computing hash join... [6.64825s] Building seed filter... [0.059591s] Searching alignments... [29.6675s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.03366s] Building query seed array... [0.540194s] Computing hash join... [6.94528s] Building seed filter... [0.029823s] Searching alignments... [21.9428s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.50667s] Building query seed array... [0.644349s] Computing hash join... [7.13267s] Building seed filter... [0.059488s] Searching alignments... [26.5737s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [6.51472s] Building query seed array... [0.455476s] Computing hash join... [7.28631s] Building seed filter... [0.051008s] Searching alignments... [25.0013s] Deallocating buffers... [3.2634s] Opening temporary output file... [0.000603s] Computing alignments... [175.089s] Deallocating reference... [0.466692s] Loading reference sequences... [507.335s] Masking reference... [48.5748s] Initializing temporary storage... [0.004632s] Building reference histograms... [9.18046s] Allocating buffers... [0.001074s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.469s] Building query seed array... [0.54297s] Computing hash join... [5.71359s] Building seed filter... [0.095012s] Searching alignments... [67.6663s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.8723s] Building query seed array... [0.646394s] Computing hash join... [6.76145s] Building seed filter... [0.04559s] Searching alignments... [49.1942s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.51143s] Building query seed array... [0.609727s] Computing hash join... [7.38968s] Building seed filter... [0.032442s] Searching alignments... [47.9389s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.67636s] Building query seed array... [0.559269s] Computing hash join... [5.8241s] Building seed filter... [0.030634s] Searching alignments... [35.257s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.37864s] Building query seed array... [0.4689s] Computing hash join... [6.83563s] Building seed filter... [0.046409s] Searching alignments... [56.5049s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.66988s] Building query seed array... [0.572966s] Computing hash join... [7.13014s] Building seed filter... [0.043342s] Searching alignments... [27.4433s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.33388s] Building query seed array... [0.654239s] Computing hash join... [6.7856s] Building seed filter... [0.028245s] Searching alignments... [32.5462s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.97142s] Building query seed array... [0.539395s] Computing hash join... [7.0015s] Building seed filter... [0.054543s] Searching alignments... [31.1033s] Deallocating buffers... [3.34818s] Opening temporary output file... [0.00069s] Computing alignments... [225.466s] Deallocating reference... [0.543803s] Loading reference sequences... [38.48s] Masking reference... [48.8488s] Initializing temporary storage... [0.006029s] Building reference histograms... [9.17462s] Allocating buffers... [0.000476s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.64077s] Building query seed array... [0.510201s] Computing hash join... [6.61627s] Building seed filter... [0.081404s] Searching alignments... [40.2388s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.4582s] Building query seed array... [0.625766s] Computing hash join... [7.34596s] Building seed filter... [0.034121s] Searching alignments... [39.3416s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.76517s] Building query seed array... [0.621391s] Computing hash join... [6.57286s] Building seed filter... [0.032252s] Searching alignments... [31.1222s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.60801s] Building query seed array... [0.529381s] Computing hash join... [7.40118s] Building seed filter... [0.030622s] Searching alignments... [24.9372s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.23689s] Building query seed array... [0.556063s] Computing hash join... [5.89318s] Building seed filter... [0.039724s] Searching alignments... [32.8198s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.57295s] Building query seed array... [0.562763s] Computing hash join... [6.3645s] Building seed filter... [0.029536s] Searching alignments... [26.7181s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.32849s] Building query seed array... [0.595281s] Computing hash join... [7.55674s] Building seed filter... [0.036418s] Searching alignments... [38.475s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.33787s] Building query seed array... [0.48239s] Computing hash join... [7.10845s] Building seed filter... [0.042313s] Searching alignments... [26.4909s] Deallocating buffers... [3.33673s] Opening temporary output file... [0.000786s] Computing alignments... [163.298s] Deallocating reference... [0.53439s] Loading reference sequences... [49.4575s] Masking reference... [50.9997s] Initializing temporary storage... [0.004431s] Building reference histograms... [9.81398s] Allocating buffers... [0.001046s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.66313s] Building query seed array... [0.540999s] Computing hash join... [5.73643s] Building seed filter... [0.141714s] Searching alignments... [42.6092s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.6652s] Building query seed array... [0.62487s] Computing hash join... [7.25792s] Building seed filter... [0.03212s] Searching alignments... [32.4014s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.69562s] Building query seed array... [0.648123s] Computing hash join... [7.41507s] Building seed filter... [0.031487s] Searching alignments... [34.4285s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.81158s] Building query seed array... [0.500485s] Computing hash join... [7.42494s] Building seed filter... [0.030457s] Searching alignments... [23.5633s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [6.40339s] Building query seed array... [0.497285s] Computing hash join... [5.69438s] Building seed filter... [0.028089s] Searching alignments... [27.3176s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.82022s] Building query seed array... [0.613608s] Computing hash join... [7.27656s] Building seed filter... [0.050858s] Searching alignments... [19.5749s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [10.2379s] Building query seed array... [0.576492s] Computing hash join... [5.89113s] Building seed filter... [0.028564s] Searching alignments... [21.2328s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.54894s] Building query seed array... [0.443335s] Computing hash join... [6.54959s] Building seed filter... [0.058586s] Searching alignments... [19.5386s] Deallocating buffers... [3.55381s] Opening temporary output file... [0.000888s] Computing alignments... [150.153s] Deallocating reference... [0.549107s] Loading reference sequences... [15.867s] Masking reference... [18.717s] Initializing temporary storage... [0.002494s] Building reference histograms... [3.34757s] Allocating buffers... [0.000458s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.40459s] Building query seed array... [0.5776s] Computing hash join... [1.06252s] Building seed filter... [0.019403s] Searching alignments... [22.1191s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.35374s] Building query seed array... [0.622087s] Computing hash join... [1.07746s] Building seed filter... [0.018836s] Searching alignments... [16.0383s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.12555s] Building query seed array... [0.64138s] Computing hash join... [1.12466s] Building seed filter... [0.021538s] Searching alignments... [15.728s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.40117s] Building query seed array... [0.531156s] Computing hash join... [1.14139s] Building seed filter... [0.018664s] Searching alignments... [11.788s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.37615s] Building query seed array... [0.488573s] Computing hash join... [1.13538s] Building seed filter... [0.01661s] Searching alignments... [19.883s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.12135s] Building query seed array... [0.575573s] Computing hash join... [1.1837s] Building seed filter... [0.016916s] Searching alignments... [8.56212s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.17955s] Building query seed array... [0.575743s] Computing hash join... [1.13243s] Building seed filter... [0.018307s] Searching alignments... [11.1756s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.40446s] Building query seed array... [0.467454s] Computing hash join... [1.07159s] Building seed filter... [0.017518s] Searching alignments... [8.96991s] Deallocating buffers... [0.336693s] Opening temporary output file... [0.037685s] Computing alignments... [78.7861s] Deallocating reference... [0.027748s] Loading reference sequences... [0.049487s] Deallocating buffers... [0.260102s] Joining output blocks... [214.51s] Deallocating queries... [0.030902s] Loading query sequences... [2.7e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.387474s] Closing the database file... [6.5e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 5582.21s Reported 1918688167 pairwise alignments, 1918717164 HSPs. 2680674 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.136617s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.059949s] Opening the output file... [0.001019s] Loading query sequences... [19.0001s] Masking queries... [21.5967s] Building query seed set... [0.118192s] Algorithm: Double-indexed Building query histograms... [0.733202s] Allocating buffers... [0.001019s] Loading reference sequences... [565.424s] Masking reference... [50.2833s] Initializing temporary storage... [0.004539s] Building reference histograms... [9.74173s] Allocating buffers... [0.00045s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.4699s] Building query seed array... [0.402085s] Computing hash join... [6.02796s] Building seed filter... [0.116117s] Searching alignments... [66.5139s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.04s] Building query seed array... [0.73297s] Computing hash join... [6.77746s] Building seed filter... [0.042893s] Searching alignments... [50.6572s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.55397s] Building query seed array... [0.527291s] Computing hash join... [7.15572s] Building seed filter... [0.033029s] Searching alignments... [44.9001s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.34342s] Building query seed array... [0.555426s] Computing hash join... [6.61872s] Building seed filter... [0.050262s] Searching alignments... [40.7041s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.12303s] Building query seed array... [0.434234s] Computing hash join... [6.38673s] Building seed filter... [0.042938s] Searching alignments... [64.0296s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.40616s] Building query seed array... [0.504211s] Computing hash join... [6.40763s] Building seed filter... [0.042934s] Searching alignments... [30.5298s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.34161s] Building query seed array... [0.560608s] Computing hash join... [7.10577s] Building seed filter... [0.032364s] Searching alignments... [34.3809s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.396s] Building query seed array... [0.446614s] Computing hash join... [6.63066s] Building seed filter... [0.043289s] Searching alignments... [30.1579s] Deallocating buffers... [3.15859s] Opening temporary output file... [0.002132s] Computing alignments... [226.5s] Deallocating reference... [0.433675s] Loading reference sequences... [545.63s] Masking reference... [48.7145s] Initializing temporary storage... [0.004492s] Building reference histograms... [8.69325s] Allocating buffers... [0.001066s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.53447s] Building query seed array... [0.461061s] Computing hash join... [5.57922s] Building seed filter... [0.097193s] Searching alignments... [46.1273s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.2548s] Building query seed array... [0.580971s] Computing hash join... [7.36688s] Building seed filter... [0.035416s] Searching alignments... [37.4832s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.75305s] Building query seed array... [0.592357s] Computing hash join... [7.25855s] Building seed filter... [0.038496s] Searching alignments... [32.8343s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.3343s] Building query seed array... [0.519446s] Computing hash join... [6.97079s] Building seed filter... [0.057947s] Searching alignments... [28.3099s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [6.80146s] Building query seed array... [0.439579s] Computing hash join... [6.30158s] Building seed filter... [0.042624s] Searching alignments... [28.7915s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.08001s] Building query seed array... [0.539143s] Computing hash join... [7.21171s] Building seed filter... [0.031353s] Searching alignments... [21.209s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.82715s] Building query seed array... [0.526729s] Computing hash join... [5.73102s] Building seed filter... [0.030173s] Searching alignments... [24.5063s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.10692s] Building query seed array... [0.451843s] Computing hash join... [6.94654s] Building seed filter... [0.045806s] Searching alignments... [19.6636s] Deallocating buffers... [3.32319s] Opening temporary output file... [0.000537s] Computing alignments... [163.768s] Deallocating reference... [0.451096s] Loading reference sequences... [520.99s] Masking reference... [48.4846s] Initializing temporary storage... [0.0058s] Building reference histograms... [9.71401s] Allocating buffers... [0.000473s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.45207s] Building query seed array... [0.482988s] Computing hash join... [7.0548s] Building seed filter... [0.066353s] Searching alignments... [57.298s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.8519s] Building query seed array... [0.599315s] Computing hash join... [5.56836s] Building seed filter... [0.080157s] Searching alignments... [43.6104s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.4834s] Building query seed array... [0.598853s] Computing hash join... [6.57965s] Building seed filter... [0.055042s] Searching alignments... [40.0017s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.95279s] Building query seed array... [0.483237s] Computing hash join... [6.62106s] Building seed filter... [0.063482s] Searching alignments... [35.6501s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.27992s] Building query seed array... [0.426135s] Computing hash join... [5.71143s] Building seed filter... [0.032042s] Searching alignments... [60.0179s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.20158s] Building query seed array... [0.604s] Computing hash join... [6.41465s] Building seed filter... [0.042502s] Searching alignments... [26.6304s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [10.0845s] Building query seed array... [0.500777s] Computing hash join... [7.17345s] Building seed filter... [0.036842s] Searching alignments... [29.2188s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.60267s] Building query seed array... [0.461105s] Computing hash join... [6.1026s] Building seed filter... [0.073133s] Searching alignments... [25.0348s] Deallocating buffers... [3.34712s] Opening temporary output file... [0.000859s] Computing alignments... [210.97s] Deallocating reference... [0.564244s] Loading reference sequences... [489.462s] Masking reference... [48.718s] Initializing temporary storage... [0.005551s] Building reference histograms... [9.14944s] Allocating buffers... [0.001032s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.45795s] Building query seed array... [0.482399s] Computing hash join... [6.66767s] Building seed filter... [0.109714s] Searching alignments... [38.4046s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.47s] Building query seed array... [0.592138s] Computing hash join... [7.18676s] Building seed filter... [0.039537s] Searching alignments... [33.0655s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [10.1358s] Building query seed array... [0.600675s] Computing hash join... [6.6513s] Building seed filter... [0.066277s] Searching alignments... [26.5688s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.20799s] Building query seed array... [0.480855s] Computing hash join... [6.7582s] Building seed filter... [0.057281s] Searching alignments... [27.3077s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.17256s] Building query seed array... [0.451309s] Computing hash join... [6.13314s] Building seed filter... [0.070475s] Searching alignments... [33.9619s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.8093s] Building query seed array... [0.501518s] Computing hash join... [6.02773s] Building seed filter... [0.036938s] Searching alignments... [16.8562s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.6153s] Building query seed array... [0.546695s] Computing hash join... [6.2075s] Building seed filter... [0.056516s] Searching alignments... [30.6929s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.41497s] Building query seed array... [0.437934s] Computing hash join... [5.70678s] Building seed filter... [0.03257s] Searching alignments... [17.0083s] Deallocating buffers... [3.56337s] Opening temporary output file... [0.000797s] Computing alignments... [153.533s] Deallocating reference... [0.550652s] Loading reference sequences... [36.0321s] Masking reference... [48.968s] Initializing temporary storage... [0.005599s] Building reference histograms... [9.57896s] Allocating buffers... [0.001061s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.64795s] Building query seed array... [0.542152s] Computing hash join... [5.9691s] Building seed filter... [0.097159s] Searching alignments... [40.0523s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2574s] Building query seed array... [0.596575s] Computing hash join... [6.78108s] Building seed filter... [0.041263s] Searching alignments... [29.8434s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.0296s] Building query seed array... [0.607315s] Computing hash join... [5.8231s] Building seed filter... [0.048157s] Searching alignments... [27.125s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.46849s] Building query seed array... [0.491565s] Computing hash join... [6.82519s] Building seed filter... [0.051387s] Searching alignments... [24.7628s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.2052s] Building query seed array... [0.442424s] Computing hash join... [5.86433s] Building seed filter... [0.038284s] Searching alignments... [27.8148s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.71688s] Building query seed array... [0.520968s] Computing hash join... [7.10131s] Building seed filter... [0.057155s] Searching alignments... [19.0575s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.44363s] Building query seed array... [0.528903s] Computing hash join... [5.74834s] Building seed filter... [0.031916s] Searching alignments... [20.7562s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.85035s] Building query seed array... [0.438367s] Computing hash join... [7.01427s] Building seed filter... [0.044591s] Searching alignments... [16.3435s] Deallocating buffers... [3.52099s] Opening temporary output file... [0.000882s] Computing alignments... [145.026s] Deallocating reference... [0.572579s] Loading reference sequences... [210.247s] Masking reference... [17.613s] Initializing temporary storage... [0.00451s] Building reference histograms... [3.58104s] Allocating buffers... [0.000446s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.33584s] Building query seed array... [0.513274s] Computing hash join... [1.26252s] Building seed filter... [0.021504s] Searching alignments... [18.8356s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.27806s] Building query seed array... [0.608189s] Computing hash join... [1.32573s] Building seed filter... [0.031674s] Searching alignments... [15.4667s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.06294s] Building query seed array... [0.619308s] Computing hash join... [1.37924s] Building seed filter... [0.020583s] Searching alignments... [12.4945s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.32269s] Building query seed array... [0.518267s] Computing hash join... [1.34436s] Building seed filter... [0.026388s] Searching alignments... [11.0763s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.24273s] Building query seed array... [0.426835s] Computing hash join... [1.3639s] Building seed filter... [0.019426s] Searching alignments... [20.5609s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.03423s] Building query seed array... [0.537504s] Computing hash join... [1.37678s] Building seed filter... [0.019227s] Searching alignments... [8.76364s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.05368s] Building query seed array... [0.512296s] Computing hash join... [1.36536s] Building seed filter... [0.030694s] Searching alignments... [10.1566s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.30234s] Building query seed array... [0.452164s] Computing hash join... [1.44312s] Building seed filter... [0.019642s] Searching alignments... [9.9125s] Deallocating buffers... [0.190808s] Opening temporary output file... [0.060355s] Computing alignments... [75.52s] Deallocating reference... [0.031198s] Loading reference sequences... [0.060327s] Deallocating buffers... [0.217572s] Joining output blocks... [216.87s] Deallocating queries... [0.01866s] Loading query sequences... [2.2e-05s] Closing the input file... [4.3e-05s] Closing the output file... [0.430473s] Closing the database file... [9.1e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 6054.93s Reported 1777345628 pairwise alignments, 1777372521 HSPs. 2609672 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.073144s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.099887s] Opening the output file... [0.000493s] Loading query sequences... [19.3134s] Masking queries... [21.3862s] Building query seed set... [0.116694s] Algorithm: Double-indexed Building query histograms... [0.745994s] Allocating buffers... [0.001082s] Loading reference sequences... [569.388s] Masking reference... [50.5196s] Initializing temporary storage... [0.004473s] Building reference histograms... [9.09373s] Allocating buffers... [0.000478s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.52085s] Building query seed array... [0.439743s] Computing hash join... [6.814s] Building seed filter... [0.108335s] Searching alignments... [68.4781s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.8077s] Building query seed array... [0.742295s] Computing hash join... [7.14522s] Building seed filter... [0.039817s] Searching alignments... [51.5788s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.51564s] Building query seed array... [0.586158s] Computing hash join... [7.43079s] Building seed filter... [0.035735s] Searching alignments... [46.2802s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.02828s] Building query seed array... [0.529976s] Computing hash join... [5.80372s] Building seed filter... [0.032521s] Searching alignments... [35.7726s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.11275s] Building query seed array... [0.43903s] Computing hash join... [6.94883s] Building seed filter... [0.053297s] Searching alignments... [54.7834s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.58142s] Building query seed array... [0.510214s] Computing hash join... [6.61982s] Building seed filter... [0.055171s] Searching alignments... [27.1566s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.21476s] Building query seed array... [0.549839s] Computing hash join... [6.70657s] Building seed filter... [0.045683s] Searching alignments... [33.956s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.23554s] Building query seed array... [0.454524s] Computing hash join... [7.19762s] Building seed filter... [0.032962s] Searching alignments... [30.3877s] Deallocating buffers... [3.20958s] Opening temporary output file... [0.000829s] Computing alignments... [217.948s] Deallocating reference... [0.413799s] Loading reference sequences... [572.887s] Masking reference... [48.5254s] Initializing temporary storage... [0.004472s] Building reference histograms... [9.40475s] Allocating buffers... [0.000455s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.49884s] Building query seed array... [0.518764s] Computing hash join... [7.61394s] Building seed filter... [0.084767s] Searching alignments... [47.2486s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [10.8369s] Building query seed array... [0.582945s] Computing hash join... [6.32632s] Building seed filter... [0.034988s] Searching alignments... [36.8941s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.87622s] Building query seed array... [0.629405s] Computing hash join... [6.21193s] Building seed filter... [0.035276s] Searching alignments... [33.7844s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.65961s] Building query seed array... [0.504688s] Computing hash join... [7.41891s] Building seed filter... [0.063652s] Searching alignments... [25.3976s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.87842s] Building query seed array... [0.448984s] Computing hash join... [6.17829s] Building seed filter... [0.082172s] Searching alignments... [28.942s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.18765s] Building query seed array... [0.567037s] Computing hash join... [6.29327s] Building seed filter... [0.031629s] Searching alignments... [19.4266s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.93323s] Building query seed array... [0.533646s] Computing hash join... [6.53435s] Building seed filter... [0.077289s] Searching alignments... [23.8919s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.80506s] Building query seed array... [0.452634s] Computing hash join... [7.25581s] Building seed filter... [0.061704s] Searching alignments... [22.0258s] Deallocating buffers... [4.16757s] Opening temporary output file... [0.000819s] Computing alignments... [163.034s] Deallocating reference... [0.070891s] Loading reference sequences... [561.03s] Masking reference... [48.4399s] Initializing temporary storage... [0.0054s] Building reference histograms... [9.2111s] Allocating buffers... [0.001036s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.50221s] Building query seed array... [0.502836s] Computing hash join... [5.70456s] Building seed filter... [0.106672s] Searching alignments... [59.7364s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.6356s] Building query seed array... [0.594388s] Computing hash join... [6.70632s] Building seed filter... [0.035082s] Searching alignments... [43.9703s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.60045s] Building query seed array... [0.608068s] Computing hash join... [6.28352s] Building seed filter... [0.047615s] Searching alignments... [41.374s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.39246s] Building query seed array... [0.514426s] Computing hash join... [5.80303s] Building seed filter... [0.037097s] Searching alignments... [31.0418s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [6.79667s] Building query seed array... [0.444701s] Computing hash join... [7.12927s] Building seed filter... [0.033234s] Searching alignments... [30.682s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.4702s] Building query seed array... [0.5553s] Computing hash join... [7.12761s] Building seed filter... [0.0458s] Searching alignments... [24.2633s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.24352s] Building query seed array... [0.533216s] Computing hash join... [6.62708s] Building seed filter... [0.040297s] Searching alignments... [29.9507s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.76175s] Building query seed array... [0.462902s] Computing hash join... [6.97065s] Building seed filter... [0.042968s] Searching alignments... [28.1997s] Deallocating buffers... [3.33441s] Opening temporary output file... [0.000567s] Computing alignments... [200.741s] Deallocating reference... [0.488329s] Loading reference sequences... [514.453s] Masking reference... [49.0011s] Initializing temporary storage... [0.005619s] Building reference histograms... [9.337s] Allocating buffers... [0.001047s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.48865s] Building query seed array... [0.559958s] Computing hash join... [6.90427s] Building seed filter... [0.101027s] Searching alignments... [37.2098s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.3635s] Building query seed array... [0.600857s] Computing hash join... [7.43347s] Building seed filter... [0.038212s] Searching alignments... [31.7445s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.82422s] Building query seed array... [0.615065s] Computing hash join... [7.62647s] Building seed filter... [0.038019s] Searching alignments... [28.6459s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.85282s] Building query seed array... [0.511374s] Computing hash join... [6.21743s] Building seed filter... [0.074487s] Searching alignments... [22.1548s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.02716s] Building query seed array... [0.439139s] Computing hash join... [7.00487s] Building seed filter... [0.056277s] Searching alignments... [27.5005s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.60718s] Building query seed array... [0.533001s] Computing hash join... [6.31061s] Building seed filter... [0.080825s] Searching alignments... [23.4921s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.50379s] Building query seed array... [0.534368s] Computing hash join... [7.10907s] Building seed filter... [0.051564s] Searching alignments... [33.1452s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.48523s] Building query seed array... [0.431739s] Computing hash join... [7.31318s] Building seed filter... [0.034868s] Searching alignments... [23.1122s] Deallocating buffers... [3.46114s] Opening temporary output file... [0.000726s] Computing alignments... [148.211s] Deallocating reference... [0.55258s] Loading reference sequences... [463.282s] Masking reference... [48.4831s] Initializing temporary storage... [0.00547s] Building reference histograms... [9.18235s] Allocating buffers... [0.001044s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.49051s] Building query seed array... [0.501468s] Computing hash join... [5.34455s] Building seed filter... [0.109305s] Searching alignments... [37.9387s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.1614s] Building query seed array... [0.597673s] Computing hash join... [5.63099s] Building seed filter... [0.084771s] Searching alignments... [30.1148s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.32993s] Building query seed array... [0.611914s] Computing hash join... [6.06849s] Building seed filter... [0.038287s] Searching alignments... [29.7861s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.833s] Building query seed array... [0.50522s] Computing hash join... [7.445s] Building seed filter... [0.038201s] Searching alignments... [21.4126s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.00797s] Building query seed array... [0.446673s] Computing hash join... [5.98687s] Building seed filter... [0.032216s] Searching alignments... [23.7964s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.66372s] Building query seed array... [0.541115s] Computing hash join... [7.07642s] Building seed filter... [0.05059s] Searching alignments... [17.4937s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.13802s] Building query seed array... [0.520366s] Computing hash join... [7.11142s] Building seed filter... [0.055499s] Searching alignments... [19.6012s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.04994s] Building query seed array... [0.468257s] Computing hash join... [5.95942s] Building seed filter... [0.032318s] Searching alignments... [18.7981s] Deallocating buffers... [3.47617s] Opening temporary output file... [0.000803s] Computing alignments... [134.475s] Deallocating reference... [0.53516s] Loading reference sequences... [213.421s] Masking reference... [18.1654s] Initializing temporary storage... [0.003608s] Building reference histograms... [3.26422s] Allocating buffers... [0.000668s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.34343s] Building query seed array... [0.517826s] Computing hash join... [1.16463s] Building seed filter... [0.024422s] Searching alignments... [19.7832s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.26221s] Building query seed array... [0.637558s] Computing hash join... [1.12522s] Building seed filter... [0.021166s] Searching alignments... [15.056s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.13537s] Building query seed array... [0.610649s] Computing hash join... [1.13904s] Building seed filter... [0.020892s] Searching alignments... [12.8698s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.3906s] Building query seed array... [0.497429s] Computing hash join... [1.13421s] Building seed filter... [0.019768s] Searching alignments... [10.0186s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.29949s] Building query seed array... [0.428374s] Computing hash join... [1.1886s] Building seed filter... [0.018911s] Searching alignments... [16.5466s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.11997s] Building query seed array... [0.585615s] Computing hash join... [1.16963s] Building seed filter... [0.018849s] Searching alignments... [7.64773s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.01055s] Building query seed array... [0.527763s] Computing hash join... [1.22564s] Building seed filter... [0.020914s] Searching alignments... [9.94657s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.33329s] Building query seed array... [0.457375s] Computing hash join... [1.1318s] Building seed filter... [0.018255s] Searching alignments... [8.25644s] Deallocating buffers... [0.352655s] Opening temporary output file... [0.023259s] Computing alignments... [70.3193s] Deallocating reference... [0.026731s] Loading reference sequences... [0.044739s] Deallocating buffers... [0.237642s] Joining output blocks... [197.141s] Deallocating queries... [0.017696s] Loading query sequences... [3e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.397691s] Closing the database file... [7.2e-05s] Deallocating taxonomy... [2.7e-05s] Total time = 6472.44s Reported 1674248496 pairwise alignments, 1674273796 HSPs. 2563134 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.068278s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.078086s] Opening the output file... [0.00155s] Loading query sequences... [19.4611s] Masking queries... [31.2202s] Building query seed set... [0.117275s] Algorithm: Double-indexed Building query histograms... [0.732209s] Allocating buffers... [0.001037s] Loading reference sequences... [547.5s] Masking reference... [51.1162s] Initializing temporary storage... [0.004491s] Building reference histograms... [8.96181s] Allocating buffers... [0.000456s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.49484s] Building query seed array... [0.402353s] Computing hash join... [6.08485s] Building seed filter... [0.101218s] Searching alignments... [65.3642s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3467s] Building query seed array... [0.728967s] Computing hash join... [6.87397s] Building seed filter... [0.039643s] Searching alignments... [50.5165s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.34101s] Building query seed array... [0.562788s] Computing hash join... [7.18141s] Building seed filter... [0.034065s] Searching alignments... [45.7769s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.45411s] Building query seed array... [0.529285s] Computing hash join... [6.02395s] Building seed filter... [0.033675s] Searching alignments... [40.8668s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.29679s] Building query seed array... [0.434739s] Computing hash join... [6.44705s] Building seed filter... [0.046627s] Searching alignments... [64.085s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.36941s] Building query seed array... [0.510021s] Computing hash join... [7.78955s] Building seed filter... [0.050471s] Searching alignments... [30.3907s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [8.63341s] Building query seed array... [0.501179s] Computing hash join... [7.95379s] Building seed filter... [0.0299s] Searching alignments... [34.9071s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.39558s] Building query seed array... [0.462898s] Computing hash join... [6.84378s] Building seed filter... [0.047771s] Searching alignments... [30.0516s] Deallocating buffers... [3.17559s] Opening temporary output file... [0.000696s] Computing alignments... [229.317s] Deallocating reference... [0.399604s] Loading reference sequences... [525.357s] Masking reference... [49.8356s] Initializing temporary storage... [0.004566s] Building reference histograms... [9.00142s] Allocating buffers... [0.001054s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.4177s] Building query seed array... [0.481544s] Computing hash join... [5.52837s] Building seed filter... [0.078762s] Searching alignments... [46.0568s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.923s] Building query seed array... [0.607228s] Computing hash join... [6.96433s] Building seed filter... [0.043119s] Searching alignments... [36.5104s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.91804s] Building query seed array... [0.589948s] Computing hash join... [7.10248s] Building seed filter... [0.044237s] Searching alignments... [32.4984s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.09332s] Building query seed array... [0.525032s] Computing hash join... [5.85208s] Building seed filter... [0.077529s] Searching alignments... [27.7555s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.07775s] Building query seed array... [0.41913s] Computing hash join... [6.77636s] Building seed filter... [0.059241s] Searching alignments... [28.4751s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.5559s] Building query seed array... [0.528537s] Computing hash join... [7.27635s] Building seed filter... [0.033819s] Searching alignments... [21.1424s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.38678s] Building query seed array... [0.544599s] Computing hash join... [5.92284s] Building seed filter... [0.032157s] Searching alignments... [24.0739s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.35349s] Building query seed array... [0.450313s] Computing hash join... [6.85234s] Building seed filter... [0.049006s] Searching alignments... [19.806s] Deallocating buffers... [3.3228s] Opening temporary output file... [0.000706s] Computing alignments... [162.868s] Deallocating reference... [0.493113s] Loading reference sequences... [530.501s] Masking reference... [49.3161s] Initializing temporary storage... [0.005834s] Building reference histograms... [8.84287s] Allocating buffers... [0.001057s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.48265s] Building query seed array... [0.493176s] Computing hash join... [5.75673s] Building seed filter... [0.102299s] Searching alignments... [58.1051s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.3583s] Building query seed array... [0.620541s] Computing hash join... [6.27219s] Building seed filter... [0.067989s] Searching alignments... [44.479s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.17442s] Building query seed array... [0.60952s] Computing hash join... [6.11603s] Building seed filter... [0.078034s] Searching alignments... [39.9865s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.46126s] Building query seed array... [0.516556s] Computing hash join... [6.19109s] Building seed filter... [0.080978s] Searching alignments... [36.7133s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.28588s] Building query seed array... [0.453872s] Computing hash join... [5.838s] Building seed filter... [0.032136s] Searching alignments... [60.875s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.3918s] Building query seed array... [0.516857s] Computing hash join... [7.26056s] Building seed filter... [0.031642s] Searching alignments... [26.759s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [8.93086s] Building query seed array... [0.555224s] Computing hash join... [7.09152s] Building seed filter... [0.072801s] Searching alignments... [29.9066s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.66444s] Building query seed array... [0.439566s] Computing hash join... [6.67937s] Building seed filter... [0.031695s] Searching alignments... [24.7628s] Deallocating buffers... [3.34534s] Opening temporary output file... [0.000849s] Computing alignments... [213.886s] Deallocating reference... [0.608451s] Loading reference sequences... [468.949s] Masking reference... [49.6271s] Initializing temporary storage... [0.004543s] Building reference histograms... [8.82936s] Allocating buffers... [0.001029s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.53294s] Building query seed array... [0.4971s] Computing hash join... [5.68425s] Building seed filter... [0.06936s] Searching alignments... [37.8877s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.5512s] Building query seed array... [0.578182s] Computing hash join... [5.41596s] Building seed filter... [0.072768s] Searching alignments... [34.4793s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [8.98777s] Building query seed array... [0.605003s] Computing hash join... [5.53789s] Building seed filter... [0.033752s] Searching alignments... [26.4851s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.92517s] Building query seed array... [0.482085s] Computing hash join... [7.61836s] Building seed filter... [0.034953s] Searching alignments... [27.034s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.54547s] Building query seed array... [0.440457s] Computing hash join... [5.96509s] Building seed filter... [0.052217s] Searching alignments... [32.9135s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.48385s] Building query seed array... [0.52851s] Computing hash join... [6.18037s] Building seed filter... [0.033707s] Searching alignments... [16.6934s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.97896s] Building query seed array... [0.53829s] Computing hash join... [5.98437s] Building seed filter... [0.040239s] Searching alignments... [29.9877s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.14952s] Building query seed array... [0.444569s] Computing hash join... [6.86501s] Building seed filter... [0.057041s] Searching alignments... [16.7847s] Deallocating buffers... [3.62219s] Opening temporary output file... [0.000687s] Computing alignments... [149.555s] Deallocating reference... [0.635364s] Loading reference sequences... [434.322s] Masking reference... [49.3494s] Initializing temporary storage... [0.003945s] Building reference histograms... [8.6551s] Allocating buffers... [0.001037s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.54099s] Building query seed array... [0.455389s] Computing hash join... [5.61805s] Building seed filter... [0.082104s] Searching alignments... [39.2944s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.4602s] Building query seed array... [0.591589s] Computing hash join... [5.8132s] Building seed filter... [0.070423s] Searching alignments... [29.8626s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.20672s] Building query seed array... [0.616755s] Computing hash join... [6.26962s] Building seed filter... [0.03558s] Searching alignments... [27.322s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.72532s] Building query seed array... [0.498057s] Computing hash join... [7.4048s] Building seed filter... [0.038798s] Searching alignments... [24.9898s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.15794s] Building query seed array... [0.482969s] Computing hash join... [5.96006s] Building seed filter... [0.030731s] Searching alignments... [27.7491s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.85181s] Building query seed array... [0.528989s] Computing hash join... [7.25659s] Building seed filter... [0.05681s] Searching alignments... [18.8529s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.0749s] Building query seed array... [0.508314s] Computing hash join... [6.01314s] Building seed filter... [0.031862s] Searching alignments... [20.9214s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.74927s] Building query seed array... [0.458207s] Computing hash join... [6.58505s] Building seed filter... [0.065305s] Searching alignments... [16.4188s] Deallocating buffers... [3.69437s] Opening temporary output file... [0.000923s] Computing alignments... [143.084s] Deallocating reference... [0.559683s] Loading reference sequences... [189.505s] Masking reference... [17.9168s] Initializing temporary storage... [0.003087s] Building reference histograms... [3.28786s] Allocating buffers... [0.000464s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.39334s] Building query seed array... [0.482648s] Computing hash join... [1.71979s] Building seed filter... [0.025779s] Searching alignments... [19.6353s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.20176s] Building query seed array... [0.593074s] Computing hash join... [1.64408s] Building seed filter... [0.021206s] Searching alignments... [15.0098s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.14483s] Building query seed array... [0.592054s] Computing hash join... [1.6557s] Building seed filter... [0.0222s] Searching alignments... [12.74s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.2878s] Building query seed array... [0.490224s] Computing hash join... [1.67207s] Building seed filter... [0.021165s] Searching alignments... [11.0238s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.23094s] Building query seed array... [0.431879s] Computing hash join... [1.60248s] Building seed filter... [0.020248s] Searching alignments... [20.4508s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.03647s] Building query seed array... [0.544686s] Computing hash join... [1.65198s] Building seed filter... [0.01793s] Searching alignments... [9.05749s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.09756s] Building query seed array... [0.531668s] Computing hash join... [1.59576s] Building seed filter... [0.018793s] Searching alignments... [10.1419s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.2889s] Building query seed array... [0.439907s] Computing hash join... [1.57869s] Building seed filter... [0.018352s] Searching alignments... [9.92237s] Deallocating buffers... [0.146251s] Opening temporary output file... [0.023187s] Computing alignments... [74.4957s] Deallocating reference... [0.027487s] Loading reference sequences... [0.089154s] Deallocating buffers... [0.235392s] Joining output blocks... [219.404s] Deallocating queries... [0.014747s] Loading query sequences... [1.9e-05s] Closing the input file... [2.7e-05s] Closing the output file... [0.369049s] Closing the database file... [6.6e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 6399.32s Reported 1770182924 pairwise alignments, 1770209435 HSPs. 2603898 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.101191s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.090188s] Opening the output file... [0.001052s] Loading query sequences... [19.4438s] Masking queries... [20.1511s] Building query seed set... [0.118105s] Algorithm: Double-indexed Building query histograms... [0.774554s] Allocating buffers... [0.001058s] Loading reference sequences... [521.421s] Masking reference... [50.4126s] Initializing temporary storage... [0.00529s] Building reference histograms... [9.81183s] Allocating buffers... [0.000454s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.46524s] Building query seed array... [0.430608s] Computing hash join... [6.85714s] Building seed filter... [0.098546s] Searching alignments... [67.1409s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.9413s] Building query seed array... [0.742799s] Computing hash join... [7.17645s] Building seed filter... [0.033889s] Searching alignments... [50.8538s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.54617s] Building query seed array... [0.564377s] Computing hash join... [5.7354s] Building seed filter... [0.035302s] Searching alignments... [45.8897s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.90551s] Building query seed array... [0.532208s] Computing hash join... [5.68089s] Building seed filter... [0.067582s] Searching alignments... [36.6845s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.90088s] Building query seed array... [0.436823s] Computing hash join... [6.02341s] Building seed filter... [0.043904s] Searching alignments... [54.2322s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.79126s] Building query seed array... [0.544288s] Computing hash join... [6.32186s] Building seed filter... [0.058329s] Searching alignments... [27.5025s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.45673s] Building query seed array... [0.521214s] Computing hash join... [6.38176s] Building seed filter... [0.045792s] Searching alignments... [34.5383s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.50848s] Building query seed array... [0.45927s] Computing hash join... [7.73133s] Building seed filter... [0.031264s] Searching alignments... [31.1046s] Deallocating buffers... [3.27121s] Opening temporary output file... [0.000949s] Computing alignments... [215.353s] Deallocating reference... [0.428629s] Loading reference sequences... [488.851s] Masking reference... [48.6283s] Initializing temporary storage... [0.004453s] Building reference histograms... [9.39639s] Allocating buffers... [0.001056s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.43658s] Building query seed array... [0.499457s] Computing hash join... [5.60299s] Building seed filter... [0.112214s] Searching alignments... [46.6448s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.681s] Building query seed array... [0.6031s] Computing hash join... [7.03443s] Building seed filter... [0.049104s] Searching alignments... [37.0044s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.63247s] Building query seed array... [0.641269s] Computing hash join... [7.16055s] Building seed filter... [0.066532s] Searching alignments... [34.5628s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.53453s] Building query seed array... [0.509555s] Computing hash join... [7.35715s] Building seed filter... [0.039917s] Searching alignments... [24.8153s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.27846s] Building query seed array... [0.449404s] Computing hash join... [6.604s] Building seed filter... [0.061809s] Searching alignments... [25.9092s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.73393s] Building query seed array... [0.526116s] Computing hash join... [7.2593s] Building seed filter... [0.058521s] Searching alignments... [19.054s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.28422s] Building query seed array... [0.545129s] Computing hash join... [6.17883s] Building seed filter... [0.042031s] Searching alignments... [23.7838s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.67184s] Building query seed array... [0.56255s] Computing hash join... [7.16423s] Building seed filter... [0.041001s] Searching alignments... [22.3842s] Deallocating buffers... [3.39489s] Opening temporary output file... [0.00088s] Computing alignments... [154.701s] Deallocating reference... [0.530346s] Loading reference sequences... [505.803s] Masking reference... [48.9633s] Initializing temporary storage... [0.003488s] Building reference histograms... [8.56652s] Allocating buffers... [0.00122s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.51222s] Building query seed array... [0.497882s] Computing hash join... [5.75266s] Building seed filter... [0.074248s] Searching alignments... [58.5967s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.3367s] Building query seed array... [0.645115s] Computing hash join... [6.47722s] Building seed filter... [0.041882s] Searching alignments... [43.8139s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.41313s] Building query seed array... [0.611842s] Computing hash join... [5.70858s] Building seed filter... [0.0655s] Searching alignments... [41.2829s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.4135s] Building query seed array... [0.535883s] Computing hash join... [5.63914s] Building seed filter... [0.070198s] Searching alignments... [30.8184s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.18789s] Building query seed array... [0.495039s] Computing hash join... [6.67678s] Building seed filter... [0.053867s] Searching alignments... [30.8023s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.44998s] Building query seed array... [0.533743s] Computing hash join... [7.27505s] Building seed filter... [0.033427s] Searching alignments... [24.9245s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [10.001s] Building query seed array... [0.533177s] Computing hash join... [5.9538s] Building seed filter... [0.077337s] Searching alignments... [29.675s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.20767s] Building query seed array... [0.448513s] Computing hash join... [6.6091s] Building seed filter... [0.05876s] Searching alignments... [27.7953s] Deallocating buffers... [3.48148s] Opening temporary output file... [0.000805s] Computing alignments... [198.712s] Deallocating reference... [0.613461s] Loading reference sequences... [439.529s] Masking reference... [48.818s] Initializing temporary storage... [0.004139s] Building reference histograms... [8.93518s] Allocating buffers... [0.001055s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.48726s] Building query seed array... [0.468317s] Computing hash join... [6.95704s] Building seed filter... [0.074024s] Searching alignments... [36.7489s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.2634s] Building query seed array... [0.605075s] Computing hash join... [6.96077s] Building seed filter... [0.057137s] Searching alignments... [30.9601s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.56643s] Building query seed array... [0.612808s] Computing hash join... [6.14196s] Building seed filter... [0.050991s] Searching alignments... [29.1122s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.51816s] Building query seed array... [0.50027s] Computing hash join... [6.98338s] Building seed filter... [0.066582s] Searching alignments... [21.908s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.03077s] Building query seed array... [0.44078s] Computing hash join... [6.00042s] Building seed filter... [0.034808s] Searching alignments... [26.6295s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.46547s] Building query seed array... [0.533792s] Computing hash join... [7.08151s] Building seed filter... [0.062108s] Searching alignments... [23.6888s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.5927s] Building query seed array... [0.538507s] Computing hash join... [5.88619s] Building seed filter... [0.043834s] Searching alignments... [34.7334s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.68922s] Building query seed array... [0.451542s] Computing hash join... [6.44697s] Building seed filter... [0.049861s] Searching alignments... [22.7244s] Deallocating buffers... [3.56843s] Opening temporary output file... [0.000782s] Computing alignments... [149.365s] Deallocating reference... [0.546869s] Loading reference sequences... [436.246s] Masking reference... [48.6064s] Initializing temporary storage... [0.00471s] Building reference histograms... [9.89773s] Allocating buffers... [0.001051s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.4539s] Building query seed array... [0.48598s] Computing hash join... [5.99392s] Building seed filter... [0.136315s] Searching alignments... [37.7422s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.4666s] Building query seed array... [0.561352s] Computing hash join... [6.60228s] Building seed filter... [0.056205s] Searching alignments... [30.5617s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.38604s] Building query seed array... [0.604047s] Computing hash join... [6.06494s] Building seed filter... [0.035035s] Searching alignments... [30.3286s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.06333s] Building query seed array... [0.514054s] Computing hash join... [6.63809s] Building seed filter... [0.063452s] Searching alignments... [20.8107s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.08408s] Building query seed array... [0.404446s] Computing hash join... [5.64856s] Building seed filter... [0.032047s] Searching alignments... [24.4157s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.9061s] Building query seed array... [0.567722s] Computing hash join... [7.33931s] Building seed filter... [0.05153s] Searching alignments... [17.3433s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.82487s] Building query seed array... [0.53833s] Computing hash join... [6.04706s] Building seed filter... [0.03515s] Searching alignments... [19.2623s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.21261s] Building query seed array... [0.454475s] Computing hash join... [5.87815s] Building seed filter... [0.049863s] Searching alignments... [18.1174s] Deallocating buffers... [3.66096s] Opening temporary output file... [0.000803s] Computing alignments... [132.758s] Deallocating reference... [0.618144s] Loading reference sequences... [185.341s] Masking reference... [18.082s] Initializing temporary storage... [0.005899s] Building reference histograms... [3.21195s] Allocating buffers... [0.000477s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.35396s] Building query seed array... [0.494957s] Computing hash join... [1.10296s] Building seed filter... [0.022241s] Searching alignments... [19.8962s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.33393s] Building query seed array... [0.732818s] Computing hash join... [1.16393s] Building seed filter... [0.020865s] Searching alignments... [14.4832s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.15582s] Building query seed array... [0.586624s] Computing hash join... [1.24188s] Building seed filter... [0.021994s] Searching alignments... [12.7898s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.39728s] Building query seed array... [0.464952s] Computing hash join... [1.18728s] Building seed filter... [0.022407s] Searching alignments... [9.95972s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.24368s] Building query seed array... [0.467841s] Computing hash join... [1.13334s] Building seed filter... [0.021313s] Searching alignments... [16.1342s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.13426s] Building query seed array... [0.524348s] Computing hash join... [1.21893s] Building seed filter... [0.021109s] Searching alignments... [7.57273s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.08514s] Building query seed array... [0.54229s] Computing hash join... [1.13288s] Building seed filter... [0.018699s] Searching alignments... [10.1195s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.35886s] Building query seed array... [0.440855s] Computing hash join... [1.15278s] Building seed filter... [0.019616s] Searching alignments... [8.33562s] Deallocating buffers... [0.401461s] Opening temporary output file... [0.063837s] Computing alignments... [69.654s] Deallocating reference... [0.027512s] Loading reference sequences... [0.083779s] Deallocating buffers... [0.247719s] Joining output blocks... [196.614s] Deallocating queries... [0.017597s] Loading query sequences... [3e-05s] Closing the input file... [5.1e-05s] Closing the output file... [0.386135s] Closing the database file... [9.3e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 6128.83s Reported 1667573426 pairwise alignments, 1667598806 HSPs. 2553810 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.093696s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.087915s] Opening the output file... [0.00044s] Loading query sequences... [20.7733s] Masking queries... [22.6291s] Building query seed set... [0.152585s] Algorithm: Double-indexed Building query histograms... [0.735835s] Allocating buffers... [0.001046s] Loading reference sequences... [531.665s] Masking reference... [54.3216s] Initializing temporary storage... [0.005646s] Building reference histograms... [9.35935s] Allocating buffers... [0.000474s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [7.12037s] Building query seed array... [0.429817s] Computing hash join... [4.3153s] Building seed filter... [0.072087s] Searching alignments... [64.7848s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [9.60568s] Building query seed array... [0.715589s] Computing hash join... [4.06452s] Building seed filter... [0.046943s] Searching alignments... [51.7112s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [10.4388s] Building query seed array... [0.563087s] Computing hash join... [4.19033s] Building seed filter... [0.034324s] Searching alignments... [45.7328s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.52593s] Building query seed array... [0.529139s] Computing hash join... [3.83652s] Building seed filter... [0.043386s] Searching alignments... [47.2663s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.18946s] Building query seed array... [0.433518s] Computing hash join... [3.88726s] Building seed filter... [0.053102s] Searching alignments... [70.8772s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.86176s] Building query seed array... [0.540877s] Computing hash join... [3.89567s] Building seed filter... [0.048256s] Searching alignments... [30.5521s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [8.8569s] Building query seed array... [0.54302s] Computing hash join... [4.2214s] Building seed filter... [0.043928s] Searching alignments... [41.5491s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.10466s] Building query seed array... [0.433093s] Computing hash join... [3.99603s] Building seed filter... [0.028688s] Searching alignments... [31.9617s] Deallocating buffers... [1.88952s] Opening temporary output file... [0.000556s] Computing alignments... [240.544s] Deallocating reference... [1.76013s] Loading reference sequences... [465.544s] Masking reference... [48.5887s] Initializing temporary storage... [0.005906s] Building reference histograms... [9.43011s] Allocating buffers... [0.00105s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.73106s] Building query seed array... [0.472579s] Computing hash join... [6.06287s] Building seed filter... [0.081451s] Searching alignments... [44.7515s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.3903s] Building query seed array... [0.653067s] Computing hash join... [7.277s] Building seed filter... [0.036722s] Searching alignments... [37.3494s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [10.0423s] Building query seed array... [0.594963s] Computing hash join... [7.40618s] Building seed filter... [0.034464s] Searching alignments... [33.0553s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.85122s] Building query seed array... [0.502574s] Computing hash join... [6.81748s] Building seed filter... [0.070186s] Searching alignments... [26.7287s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.08404s] Building query seed array... [0.427741s] Computing hash join... [6.82038s] Building seed filter... [0.034746s] Searching alignments... [29.8506s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [8.62431s] Building query seed array... [0.526384s] Computing hash join... [7.773s] Building seed filter... [0.027031s] Searching alignments... [24.5673s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.37787s] Building query seed array... [0.537072s] Computing hash join... [5.67437s] Building seed filter... [0.057434s] Searching alignments... [24.4868s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.35631s] Building query seed array... [0.452427s] Computing hash join... [7.06389s] Building seed filter... [0.028616s] Searching alignments... [20.7719s] Deallocating buffers... [3.28037s] Opening temporary output file... [0.000743s] Computing alignments... [165.316s] Deallocating reference... [0.574154s] Loading reference sequences... [451.716s] Masking reference... [48.439s] Initializing temporary storage... [0.004525s] Building reference histograms... [9.74522s] Allocating buffers... [0.001056s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.43015s] Building query seed array... [0.499621s] Computing hash join... [6.99332s] Building seed filter... [0.069665s] Searching alignments... [58.6718s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.7748s] Building query seed array... [0.60781s] Computing hash join... [6.55525s] Building seed filter... [0.040747s] Searching alignments... [44.1849s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.25543s] Building query seed array... [0.591978s] Computing hash join... [7.51536s] Building seed filter... [0.030242s] Searching alignments... [41.1356s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.38587s] Building query seed array... [0.504213s] Computing hash join... [7.1308s] Building seed filter... [0.039645s] Searching alignments... [42.2607s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.33488s] Building query seed array... [0.450204s] Computing hash join... [6.5023s] Building seed filter... [0.03938s] Searching alignments... [60.1778s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.37445s] Building query seed array... [0.499508s] Computing hash join... [7.21059s] Building seed filter... [0.051569s] Searching alignments... [36.6427s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.50747s] Building query seed array... [0.560736s] Computing hash join... [7.06175s] Building seed filter... [0.04145s] Searching alignments... [37.107s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.22934s] Building query seed array... [0.438727s] Computing hash join... [6.88207s] Building seed filter... [0.045741s] Searching alignments... [24.7108s] Deallocating buffers... [3.57041s] Opening temporary output file... [0.000699s] Computing alignments... [229.072s] Deallocating reference... [0.690068s] Loading reference sequences... [31.8029s] Masking reference... [51.251s] Initializing temporary storage... [0.00578s] Building reference histograms... [9.71381s] Allocating buffers... [0.001082s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.71988s] Building query seed array... [0.480814s] Computing hash join... [7.45952s] Building seed filter... [0.071558s] Searching alignments... [38.5293s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.5303s] Building query seed array... [0.60354s] Computing hash join... [7.51585s] Building seed filter... [0.027528s] Searching alignments... [32.2088s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.65436s] Building query seed array... [0.622249s] Computing hash join... [7.60019s] Building seed filter... [0.027259s] Searching alignments... [35.0251s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.54172s] Building query seed array... [0.484973s] Computing hash join... [7.33411s] Building seed filter... [0.032016s] Searching alignments... [32.7611s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.282s] Building query seed array... [0.491857s] Computing hash join... [6.79625s] Building seed filter... [0.050748s] Searching alignments... [35.0194s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.04339s] Building query seed array... [0.539448s] Computing hash join... [5.58932s] Building seed filter... [0.066657s] Searching alignments... [21.6172s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.45764s] Building query seed array... [0.56476s] Computing hash join... [7.30274s] Building seed filter... [0.04121s] Searching alignments... [32.3427s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.49624s] Building query seed array... [0.444532s] Computing hash join... [7.10686s] Building seed filter... [0.03534s] Searching alignments... [18.6978s] Deallocating buffers... [3.64723s] Opening temporary output file... [0.027211s] Computing alignments... [161.601s] Deallocating reference... [0.644284s] Loading reference sequences... [31.3828s] Masking reference... [51.5216s] Initializing temporary storage... [0.005731s] Building reference histograms... [10.1016s] Allocating buffers... [0.001042s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [7.0505s] Building query seed array... [0.483717s] Computing hash join... [6.61961s] Building seed filter... [0.111443s] Searching alignments... [39.0582s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.2745s] Building query seed array... [0.597852s] Computing hash join... [7.74207s] Building seed filter... [0.029504s] Searching alignments... [30.7541s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.08s] Building query seed array... [0.611767s] Computing hash join... [7.52225s] Building seed filter... [0.042673s] Searching alignments... [27.7461s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.62407s] Building query seed array... [0.49981s] Computing hash join... [6.03256s] Building seed filter... [0.027387s] Searching alignments... [28.3917s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.76306s] Building query seed array... [0.442283s] Computing hash join... [7.36255s] Building seed filter... [0.025878s] Searching alignments... [28.9042s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.18642s] Building query seed array... [0.516632s] Computing hash join... [6.28428s] Building seed filter... [0.061393s] Searching alignments... [19.4504s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.64432s] Building query seed array... [0.532858s] Computing hash join... [7.14492s] Building seed filter... [0.042724s] Searching alignments... [22.5185s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.11059s] Building query seed array... [0.420883s] Computing hash join... [5.91227s] Building seed filter... [0.030526s] Searching alignments... [16.7827s] Deallocating buffers... [3.82121s] Opening temporary output file... [0.000835s] Computing alignments... [147.785s] Deallocating reference... [0.713127s] Loading reference sequences... [185.281s] Masking reference... [17.4924s] Initializing temporary storage... [0.002673s] Building reference histograms... [3.46463s] Allocating buffers... [0.00063s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.34013s] Building query seed array... [0.50028s] Computing hash join... [1.09465s] Building seed filter... [0.019229s] Searching alignments... [19.1199s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.52547s] Building query seed array... [0.640684s] Computing hash join... [1.13032s] Building seed filter... [0.019721s] Searching alignments... [17.2392s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.25282s] Building query seed array... [0.618039s] Computing hash join... [1.29628s] Building seed filter... [0.020401s] Searching alignments... [13.2473s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.49031s] Building query seed array... [0.489193s] Computing hash join... [1.28859s] Building seed filter... [0.01869s] Searching alignments... [15.0425s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.33992s] Building query seed array... [0.449052s] Computing hash join... [1.28587s] Building seed filter... [0.018642s] Searching alignments... [21.3377s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.16865s] Building query seed array... [0.517951s] Computing hash join... [1.4031s] Building seed filter... [0.025957s] Searching alignments... [10.25s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.23942s] Building query seed array... [0.538931s] Computing hash join... [1.37409s] Building seed filter... [0.019716s] Searching alignments... [17.8741s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.45466s] Building query seed array... [0.467865s] Computing hash join... [1.4042s] Building seed filter... [0.02573s] Searching alignments... [11.1568s] Deallocating buffers... [0.541565s] Opening temporary output file... [0.030188s] Computing alignments... [80.3092s] Deallocating reference... [0.029574s] Loading reference sequences... [0.072676s] Deallocating buffers... [0.182387s] Joining output blocks... [242.584s] Deallocating queries... [0.019221s] Loading query sequences... [2.9e-05s] Closing the input file... [4.3e-05s] Closing the output file... [0.368002s] Closing the database file... [7.1e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 5567.27s Reported 1805908125 pairwise alignments, 1805933700 HSPs. 2592617 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.078356s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.135294s] Opening the output file... [0.000451s] Loading query sequences... [21.0076s] Masking queries... [21.9576s] Building query seed set... [0.131123s] Algorithm: Double-indexed Building query histograms... [0.733208s] Allocating buffers... [0.001062s] Loading reference sequences... [515.974s] Masking reference... [50.3157s] Initializing temporary storage... [0.005684s] Building reference histograms... [8.8574s] Allocating buffers... [0.000483s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.48393s] Building query seed array... [0.445363s] Computing hash join... [7.06645s] Building seed filter... [0.079472s] Searching alignments... [65.2618s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.7543s] Building query seed array... [0.776895s] Computing hash join... [7.33664s] Building seed filter... [0.036214s] Searching alignments... [50.9924s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.07831s] Building query seed array... [0.609951s] Computing hash join... [6.13722s] Building seed filter... [0.028547s] Searching alignments... [47.2345s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.91704s] Building query seed array... [0.571002s] Computing hash join... [6.25125s] Building seed filter... [0.056375s] Searching alignments... [36.1849s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.93577s] Building query seed array... [0.457907s] Computing hash join... [6.20963s] Building seed filter... [0.025951s] Searching alignments... [62.9398s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.22957s] Building query seed array... [0.574884s] Computing hash join... [7.08483s] Building seed filter... [0.027825s] Searching alignments... [26.2533s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.79465s] Building query seed array... [0.561202s] Computing hash join... [6.86491s] Building seed filter... [0.051557s] Searching alignments... [33.943s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.87922s] Building query seed array... [0.481547s] Computing hash join... [5.76145s] Building seed filter... [0.033924s] Searching alignments... [30.717s] Deallocating buffers... [3.25521s] Opening temporary output file... [0.000615s] Computing alignments... [233.155s] Deallocating reference... [0.439407s] Loading reference sequences... [486.128s] Masking reference... [48.3741s] Initializing temporary storage... [0.005766s] Building reference histograms... [8.68487s] Allocating buffers... [0.00104s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.47964s] Building query seed array... [0.513627s] Computing hash join... [6.71721s] Building seed filter... [0.070147s] Searching alignments... [45.4884s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.1628s] Building query seed array... [0.62564s] Computing hash join... [7.36048s] Building seed filter... [0.042062s] Searching alignments... [38.4935s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.70444s] Building query seed array... [0.659063s] Computing hash join... [6.46041s] Building seed filter... [0.03156s] Searching alignments... [35.5781s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.23986s] Building query seed array... [0.544578s] Computing hash join... [7.03358s] Building seed filter... [0.059338s] Searching alignments... [24.8947s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [6.93985s] Building query seed array... [0.476218s] Computing hash join... [5.78489s] Building seed filter... [0.063261s] Searching alignments... [27.4313s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.99078s] Building query seed array... [0.569579s] Computing hash join... [6.743s] Building seed filter... [0.041595s] Searching alignments... [18.865s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.96647s] Building query seed array... [0.580327s] Computing hash join... [6.0336s] Building seed filter... [0.064251s] Searching alignments... [23.9803s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.13118s] Building query seed array... [0.462614s] Computing hash join... [7.6346s] Building seed filter... [0.062717s] Searching alignments... [22.7494s] Deallocating buffers... [3.293s] Opening temporary output file... [0.000713s] Computing alignments... [160.332s] Deallocating reference... [0.54929s] Loading reference sequences... [472.89s] Masking reference... [48.5412s] Initializing temporary storage... [0.00451s] Building reference histograms... [9.66359s] Allocating buffers... [0.001055s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.48745s] Building query seed array... [0.502038s] Computing hash join... [7.31169s] Building seed filter... [0.060823s] Searching alignments... [55.5535s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.1072s] Building query seed array... [0.65027s] Computing hash join... [6.04742s] Building seed filter... [0.063842s] Searching alignments... [44.2621s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.55945s] Building query seed array... [0.651989s] Computing hash join... [7.51659s] Building seed filter... [0.040757s] Searching alignments... [47.1471s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.35042s] Building query seed array... [0.517911s] Computing hash join... [7.37732s] Building seed filter... [0.03014s] Searching alignments... [32.5636s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.06387s] Building query seed array... [0.476376s] Computing hash join... [7.27398s] Building seed filter... [0.052057s] Searching alignments... [54.0933s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.47261s] Building query seed array... [0.562578s] Computing hash join... [7.51088s] Building seed filter... [0.055902s] Searching alignments... [32.7161s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.39759s] Building query seed array... [0.586238s] Computing hash join... [7.61684s] Building seed filter... [0.028849s] Searching alignments... [49.8135s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.58943s] Building query seed array... [0.476994s] Computing hash join... [5.99704s] Building seed filter... [0.043674s] Searching alignments... [29.2022s] Deallocating buffers... [3.33105s] Opening temporary output file... [0.021794s] Computing alignments... [221.724s] Deallocating reference... [0.653731s] Loading reference sequences... [34.0379s] Masking reference... [51.2572s] Initializing temporary storage... [0.005538s] Building reference histograms... [8.59554s] Allocating buffers... [0.001035s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.72218s] Building query seed array... [0.540866s] Computing hash join... [7.54931s] Building seed filter... [0.069173s] Searching alignments... [39.3328s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.4134s] Building query seed array... [0.643291s] Computing hash join... [7.69008s] Building seed filter... [0.029076s] Searching alignments... [38.3891s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.40293s] Building query seed array... [0.646243s] Computing hash join... [7.56085s] Building seed filter... [0.058932s] Searching alignments... [34.2892s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.57428s] Building query seed array... [0.534457s] Computing hash join... [7.2542s] Building seed filter... [0.028487s] Searching alignments... [24.2154s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.4446s] Building query seed array... [0.490625s] Computing hash join... [6.33902s] Building seed filter... [0.049543s] Searching alignments... [30.4982s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.78257s] Building query seed array... [0.567716s] Computing hash join... [6.97584s] Building seed filter... [0.041298s] Searching alignments... [31.5181s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.80147s] Building query seed array... [0.559133s] Computing hash join... [7.34706s] Building seed filter... [0.045308s] Searching alignments... [49.7957s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.54147s] Building query seed array... [0.505746s] Computing hash join... [7.16731s] Building seed filter... [0.038215s] Searching alignments... [32.1555s] Deallocating buffers... [3.49441s] Opening temporary output file... [0.048583s] Computing alignments... [166.741s] Deallocating reference... [0.601627s] Loading reference sequences... [34.6702s] Masking reference... [49.0308s] Initializing temporary storage... [0.006331s] Building reference histograms... [9.92048s] Allocating buffers... [0.001049s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.59506s] Building query seed array... [0.538572s] Computing hash join... [7.70483s] Building seed filter... [0.074274s] Searching alignments... [38.6903s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.7355s] Building query seed array... [0.594965s] Computing hash join... [7.60996s] Building seed filter... [0.030359s] Searching alignments... [30.1602s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.2049s] Building query seed array... [0.661461s] Computing hash join... [7.43569s] Building seed filter... [0.039378s] Searching alignments... [31.9993s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.38504s] Building query seed array... [0.552948s] Computing hash join... [5.9522s] Building seed filter... [0.030607s] Searching alignments... [22.1322s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.50891s] Building query seed array... [0.470703s] Computing hash join... [6.43796s] Building seed filter... [0.062796s] Searching alignments... [25.2877s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.39903s] Building query seed array... [0.557051s] Computing hash join... [6.25625s] Building seed filter... [0.027803s] Searching alignments... [18.6386s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [10.0216s] Building query seed array... [0.588609s] Computing hash join... [5.80456s] Building seed filter... [0.068767s] Searching alignments... [20.4445s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.48899s] Building query seed array... [0.469859s] Computing hash join... [7.36363s] Building seed filter... [0.030112s] Searching alignments... [18.7288s] Deallocating buffers... [3.49746s] Opening temporary output file... [0.000688s] Computing alignments... [142.135s] Deallocating reference... [0.656595s] Loading reference sequences... [182.596s] Masking reference... [18.2129s] Initializing temporary storage... [0.00365s] Building reference histograms... [3.16599s] Allocating buffers... [0.000445s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.33905s] Building query seed array... [0.505405s] Computing hash join... [1.0153s] Building seed filter... [0.018144s] Searching alignments... [19.0753s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.5487s] Building query seed array... [0.683611s] Computing hash join... [0.977623s] Building seed filter... [0.017799s] Searching alignments... [15.4216s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.19808s] Building query seed array... [0.672448s] Computing hash join... [1.15757s] Building seed filter... [0.019077s] Searching alignments... [14.3136s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.45658s] Building query seed array... [0.543981s] Computing hash join... [1.0302s] Building seed filter... [0.01738s] Searching alignments... [11.6276s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.35365s] Building query seed array... [0.475023s] Computing hash join... [1.0804s] Building seed filter... [0.025131s] Searching alignments... [18.1049s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.15226s] Building query seed array... [0.579091s] Computing hash join... [1.09619s] Building seed filter... [0.016034s] Searching alignments... [7.89097s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.2053s] Building query seed array... [0.577096s] Computing hash join... [1.13603s] Building seed filter... [0.016641s] Searching alignments... [13.3356s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.40617s] Building query seed array... [0.445138s] Computing hash join... [1.13866s] Building seed filter... [0.016217s] Searching alignments... [8.31193s] Deallocating buffers... [0.498683s] Opening temporary output file... [0.02894s] Computing alignments... [75.903s] Deallocating reference... [0.030624s] Loading reference sequences... [0.029041s] Deallocating buffers... [0.24774s] Joining output blocks... [216.959s] Deallocating queries... [0.020465s] Loading query sequences... [2.6e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.406234s] Closing the database file... [8.8e-05s] Deallocating taxonomy... [3.4e-05s] Total time = 5531.51s Reported 1674399539 pairwise alignments, 1674426274 HSPs. 2538625 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.079578s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.073146s] Opening the output file... [0.002098s] Loading query sequences... [20.8244s] Masking queries... [21.7473s] Building query seed set... [0.132253s] Algorithm: Double-indexed Building query histograms... [0.765579s] Allocating buffers... [0.001021s] Loading reference sequences... [506.734s] Masking reference... [50.5271s] Initializing temporary storage... [0.005742s] Building reference histograms... [9.49967s] Allocating buffers... [0.000475s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.54158s] Building query seed array... [0.438152s] Computing hash join... [5.53723s] Building seed filter... [0.092235s] Searching alignments... [62.7563s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.8127s] Building query seed array... [0.757092s] Computing hash join... [6.90581s] Building seed filter... [0.051178s] Searching alignments... [52.4884s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.32023s] Building query seed array... [0.579341s] Computing hash join... [6.00702s] Building seed filter... [0.027301s] Searching alignments... [44.3284s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.83023s] Building query seed array... [0.545872s] Computing hash join... [5.60981s] Building seed filter... [0.058629s] Searching alignments... [47.8039s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.57415s] Building query seed array... [0.452234s] Computing hash join... [6.00228s] Building seed filter... [0.063004s] Searching alignments... [70.3705s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.44093s] Building query seed array... [0.551295s] Computing hash join... [7.05392s] Building seed filter... [0.039541s] Searching alignments... [29.9133s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.20112s] Building query seed array... [0.567671s] Computing hash join... [5.77655s] Building seed filter... [0.031137s] Searching alignments... [39.8939s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.18016s] Building query seed array... [0.48024s] Computing hash join... [5.65768s] Building seed filter... [0.025579s] Searching alignments... [31.5524s] Deallocating buffers... [3.41103s] Opening temporary output file... [0.000754s] Computing alignments... [243.597s] Deallocating reference... [0.453318s] Loading reference sequences... [486.254s] Masking reference... [48.7615s] Initializing temporary storage... [0.005122s] Building reference histograms... [9.42572s] Allocating buffers... [0.001083s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.44389s] Building query seed array... [0.511445s] Computing hash join... [5.97478s] Building seed filter... [0.095889s] Searching alignments... [44.8096s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.8459s] Building query seed array... [0.615152s] Computing hash join... [6.7702s] Building seed filter... [0.040587s] Searching alignments... [36.1073s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.91659s] Building query seed array... [0.591534s] Computing hash join... [6.54722s] Building seed filter... [0.052567s] Searching alignments... [33.1421s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [6.98104s] Building query seed array... [0.544643s] Computing hash join... [6.61422s] Building seed filter... [0.037518s] Searching alignments... [26.6621s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.28166s] Building query seed array... [0.471s] Computing hash join... [7.17415s] Building seed filter... [0.034362s] Searching alignments... [30.2676s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.82162s] Building query seed array... [0.521862s] Computing hash join... [5.81267s] Building seed filter... [0.061779s] Searching alignments... [23.5626s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.24035s] Building query seed array... [0.567251s] Computing hash join... [6.97363s] Building seed filter... [0.053239s] Searching alignments... [23.7356s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.26959s] Building query seed array... [0.460604s] Computing hash join... [6.23437s] Building seed filter... [0.059054s] Searching alignments... [20.0579s] Deallocating buffers... [3.37193s] Opening temporary output file... [0.000641s] Computing alignments... [168.398s] Deallocating reference... [0.540017s] Loading reference sequences... [483.314s] Masking reference... [48.5313s] Initializing temporary storage... [0.00602s] Building reference histograms... [8.60517s] Allocating buffers... [0.001044s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.54107s] Building query seed array... [0.499039s] Computing hash join... [6.55443s] Building seed filter... [0.074171s] Searching alignments... [56.9535s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2951s] Building query seed array... [0.646064s] Computing hash join... [6.39159s] Building seed filter... [0.050181s] Searching alignments... [44.3913s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.48404s] Building query seed array... [0.62753s] Computing hash join... [7.04858s] Building seed filter... [0.042479s] Searching alignments... [39.7243s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.87461s] Building query seed array... [0.536777s] Computing hash join... [7.00231s] Building seed filter... [0.045012s] Searching alignments... [41.133s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.41857s] Building query seed array... [0.455903s] Computing hash join... [6.06041s] Building seed filter... [0.062238s] Searching alignments... [62.8095s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.31735s] Building query seed array... [0.55599s] Computing hash join... [5.99781s] Building seed filter... [0.065293s] Searching alignments... [35.4104s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.83328s] Building query seed array... [0.577348s] Computing hash join... [6.25328s] Building seed filter... [0.032618s] Searching alignments... [43.3293s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.4824s] Building query seed array... [0.468559s] Computing hash join... [5.65039s] Building seed filter... [0.06597s] Searching alignments... [24.8179s] Deallocating buffers... [3.46355s] Opening temporary output file... [0.000656s] Computing alignments... [236.604s] Deallocating reference... [0.682911s] Loading reference sequences... [453.648s] Masking reference... [48.482s] Initializing temporary storage... [0.004946s] Building reference histograms... [8.93743s] Allocating buffers... [0.001058s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.5039s] Building query seed array... [0.514149s] Computing hash join... [7.18173s] Building seed filter... [0.065623s] Searching alignments... [37.2294s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [9.23367s] Building query seed array... [0.628923s] Computing hash join... [7.49415s] Building seed filter... [0.040543s] Searching alignments... [31.6902s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [10.0934s] Building query seed array... [0.636339s] Computing hash join... [5.82659s] Building seed filter... [0.059573s] Searching alignments... [27.962s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.41323s] Building query seed array... [0.503105s] Computing hash join... [6.51821s] Building seed filter... [0.054917s] Searching alignments... [32.5886s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [6.9564s] Building query seed array... [0.467868s] Computing hash join... [6.91435s] Building seed filter... [0.032855s] Searching alignments... [36.2063s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.79054s] Building query seed array... [0.553496s] Computing hash join... [6.19507s] Building seed filter... [0.060893s] Searching alignments... [21.116s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.30499s] Building query seed array... [0.544615s] Computing hash join... [6.91314s] Building seed filter... [0.050743s] Searching alignments... [33.1057s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.5339s] Building query seed array... [0.464598s] Computing hash join... [7.22947s] Building seed filter... [0.04008s] Searching alignments... [18.6192s] Deallocating buffers... [3.52414s] Opening temporary output file... [0.000922s] Computing alignments... [166.546s] Deallocating reference... [0.606802s] Loading reference sequences... [424.173s] Masking reference... [48.7701s] Initializing temporary storage... [0.005889s] Building reference histograms... [8.5103s] Allocating buffers... [0.001072s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.54735s] Building query seed array... [0.524216s] Computing hash join... [6.86292s] Building seed filter... [0.073467s] Searching alignments... [39.9397s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.1299s] Building query seed array... [0.62529s] Computing hash join... [7.28696s] Building seed filter... [0.029066s] Searching alignments... [29.7736s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.3791s] Building query seed array... [0.63987s] Computing hash join... [6.91521s] Building seed filter... [0.041678s] Searching alignments... [27.5111s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.10948s] Building query seed array... [0.489198s] Computing hash join... [5.82484s] Building seed filter... [0.029938s] Searching alignments... [28.1683s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.30487s] Building query seed array... [0.496607s] Computing hash join... [6.96569s] Building seed filter... [0.043408s] Searching alignments... [29.446s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.42385s] Building query seed array... [0.521397s] Computing hash join... [6.06336s] Building seed filter... [0.025767s] Searching alignments... [19.6721s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.93001s] Building query seed array... [0.570262s] Computing hash join... [7.04054s] Building seed filter... [0.040401s] Searching alignments... [21.9375s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.58844s] Building query seed array... [0.456116s] Computing hash join... [6.73601s] Building seed filter... [0.050698s] Searching alignments... [16.3854s] Deallocating buffers... [3.58597s] Opening temporary output file... [0.000719s] Computing alignments... [149.423s] Deallocating reference... [0.64979s] Loading reference sequences... [182.949s] Masking reference... [18.3196s] Initializing temporary storage... [0.002835s] Building reference histograms... [3.15072s] Allocating buffers... [0.000451s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.36349s] Building query seed array... [0.515277s] Computing hash join... [1.03866s] Building seed filter... [0.017357s] Searching alignments... [18.6854s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.58316s] Building query seed array... [0.670915s] Computing hash join... [0.994995s] Building seed filter... [0.016101s] Searching alignments... [17.0986s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.1743s] Building query seed array... [0.63438s] Computing hash join... [1.05264s] Building seed filter... [0.017465s] Searching alignments... [13.0413s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.46697s] Building query seed array... [0.520679s] Computing hash join... [1.0609s] Building seed filter... [0.016886s] Searching alignments... [15.5879s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.36452s] Building query seed array... [0.461363s] Computing hash join... [1.16995s] Building seed filter... [0.0156s] Searching alignments... [21.2014s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.52011s] Building query seed array... [0.614518s] Computing hash join... [1.14675s] Building seed filter... [0.019518s] Searching alignments... [10.4173s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.25285s] Building query seed array... [0.556124s] Computing hash join... [1.14202s] Building seed filter... [0.015685s] Searching alignments... [17.5327s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.42103s] Building query seed array... [0.476037s] Computing hash join... [1.18456s] Building seed filter... [0.016822s] Searching alignments... [11.4899s] Deallocating buffers... [0.557274s] Opening temporary output file... [0.02355s] Computing alignments... [80.0719s] Deallocating reference... [0.030701s] Loading reference sequences... [0.029208s] Deallocating buffers... [0.246234s] Joining output blocks... [241.179s] Deallocating queries... [0.018666s] Loading query sequences... [2.6e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.339833s] Closing the database file... [6.9e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 6404.34s Reported 1793045151 pairwise alignments, 1793070230 HSPs. 2577917 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.136816s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.104106s] Opening the output file... [0.000479s] Loading query sequences... [20.9795s] Masking queries... [22.3486s] Building query seed set... [0.126205s] Algorithm: Double-indexed Building query histograms... [0.789797s] Allocating buffers... [0.001072s] Loading reference sequences... [513.864s] Masking reference... [50.4955s] Initializing temporary storage... [0.003642s] Building reference histograms... [9.45928s] Allocating buffers... [0.000448s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.48781s] Building query seed array... [0.471427s] Computing hash join... [5.92141s] Building seed filter... [0.07846s] Searching alignments... [62.0306s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.6797s] Building query seed array... [0.778711s] Computing hash join... [5.91421s] Building seed filter... [0.067062s] Searching alignments... [51.9781s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [8.98013s] Building query seed array... [0.581372s] Computing hash join... [7.60264s] Building seed filter... [0.028339s] Searching alignments... [45.8297s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.09981s] Building query seed array... [0.559787s] Computing hash join... [6.2953s] Building seed filter... [0.031449s] Searching alignments... [36.982s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.20231s] Building query seed array... [0.458777s] Computing hash join... [7.04239s] Building seed filter... [0.058527s] Searching alignments... [63.4459s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.45202s] Building query seed array... [0.563484s] Computing hash join... [7.21789s] Building seed filter... [0.028041s] Searching alignments... [25.7543s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.72054s] Building query seed array... [0.566806s] Computing hash join... [6.28247s] Building seed filter... [0.059037s] Searching alignments... [34.0987s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.85436s] Building query seed array... [0.479793s] Computing hash join... [6.07307s] Building seed filter... [0.028027s] Searching alignments... [30.7764s] Deallocating buffers... [3.3255s] Opening temporary output file... [0.000674s] Computing alignments... [228.751s] Deallocating reference... [0.467187s] Loading reference sequences... [485.211s] Masking reference... [48.7378s] Initializing temporary storage... [0.00633s] Building reference histograms... [8.49677s] Allocating buffers... [0.000476s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.50778s] Building query seed array... [0.507595s] Computing hash join... [6.79713s] Building seed filter... [0.073972s] Searching alignments... [43.9524s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [10.558s] Building query seed array... [0.666975s] Computing hash join... [7.6544s] Building seed filter... [0.048804s] Searching alignments... [36.9329s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.90834s] Building query seed array... [0.634016s] Computing hash join... [7.31398s] Building seed filter... [0.032666s] Searching alignments... [35.6431s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.76482s] Building query seed array... [0.555704s] Computing hash join... [7.35114s] Building seed filter... [0.033858s] Searching alignments... [24.307s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.1269s] Building query seed array... [0.473737s] Computing hash join... [5.86697s] Building seed filter... [0.0278s] Searching alignments... [27.3683s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.25129s] Building query seed array... [0.561482s] Computing hash join... [7.48546s] Building seed filter... [0.028585s] Searching alignments... [19.1091s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.16945s] Building query seed array... [0.581855s] Computing hash join... [6.07238s] Building seed filter... [0.027759s] Searching alignments... [24.2496s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [6.78328s] Building query seed array... [0.463957s] Computing hash join... [6.93845s] Building seed filter... [0.066436s] Searching alignments... [22.6334s] Deallocating buffers... [3.28524s] Opening temporary output file... [0.00071s] Computing alignments... [157.762s] Deallocating reference... [0.575527s] Loading reference sequences... [477.449s] Masking reference... [48.7152s] Initializing temporary storage... [0.005826s] Building reference histograms... [8.51086s] Allocating buffers... [0.00108s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [7.07742s] Building query seed array... [0.528382s] Computing hash join... [5.78064s] Building seed filter... [0.085639s] Searching alignments... [55.7491s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.2914s] Building query seed array... [0.636039s] Computing hash join... [5.95139s] Building seed filter... [0.029508s] Searching alignments... [45.1396s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.28391s] Building query seed array... [0.640909s] Computing hash join... [5.9052s] Building seed filter... [0.044935s] Searching alignments... [46.369s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.75706s] Building query seed array... [0.543288s] Computing hash join... [5.8007s] Building seed filter... [0.062538s] Searching alignments... [32.3672s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [6.82442s] Building query seed array... [0.506524s] Computing hash join... [6.25808s] Building seed filter... [0.040273s] Searching alignments... [54.2791s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.56846s] Building query seed array... [0.569626s] Computing hash join... [5.8507s] Building seed filter... [0.059331s] Searching alignments... [32.9635s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.20576s] Building query seed array... [0.546092s] Computing hash join... [5.93993s] Building seed filter... [0.02797s] Searching alignments... [36.1733s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.06625s] Building query seed array... [0.486087s] Computing hash join... [6.615s] Building seed filter... [0.049793s] Searching alignments... [29.782s] Deallocating buffers... [2.89195s] Opening temporary output file... [0.000641s] Computing alignments... [211.175s] Deallocating reference... [1.14481s] Loading reference sequences... [407.33s] Masking reference... [48.9546s] Initializing temporary storage... [0.004114s] Building reference histograms... [8.5128s] Allocating buffers... [0.001074s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.56996s] Building query seed array... [0.535949s] Computing hash join... [5.87024s] Building seed filter... [0.078588s] Searching alignments... [39.049s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.0421s] Building query seed array... [0.629687s] Computing hash join... [5.88953s] Building seed filter... [0.051434s] Searching alignments... [37.9218s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [8.95329s] Building query seed array... [0.641357s] Computing hash join... [5.71456s] Building seed filter... [0.029072s] Searching alignments... [34.8495s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.88598s] Building query seed array... [0.529176s] Computing hash join... [6.13544s] Building seed filter... [0.030001s] Searching alignments... [24.562s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.32698s] Building query seed array... [0.474969s] Computing hash join... [6.18055s] Building seed filter... [0.06285s] Searching alignments... [31.9716s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.79317s] Building query seed array... [0.563669s] Computing hash join... [6.13884s] Building seed filter... [0.037134s] Searching alignments... [30.5476s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.50979s] Building query seed array... [0.578093s] Computing hash join... [6.70273s] Building seed filter... [0.039564s] Searching alignments... [47.0106s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.55839s] Building query seed array... [0.483196s] Computing hash join... [7.55564s] Building seed filter... [0.029346s] Searching alignments... [30.8618s] Deallocating buffers... [3.6564s] Opening temporary output file... [0.000784s] Computing alignments... [164.632s] Deallocating reference... [0.607764s] Loading reference sequences... [32.3089s] Masking reference... [49.0448s] Initializing temporary storage... [0.005668s] Building reference histograms... [9.05818s] Allocating buffers... [0.000459s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.68315s] Building query seed array... [0.531949s] Computing hash join... [7.55215s] Building seed filter... [0.068466s] Searching alignments... [37.9043s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.531s] Building query seed array... [0.656654s] Computing hash join... [7.39612s] Building seed filter... [0.062368s] Searching alignments... [29.6472s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.1806s] Building query seed array... [0.664324s] Computing hash join... [7.7135s] Building seed filter... [0.029228s] Searching alignments... [31.5321s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.73216s] Building query seed array... [0.543678s] Computing hash join... [7.27979s] Building seed filter... [0.054383s] Searching alignments... [21.7778s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.21411s] Building query seed array... [0.451155s] Computing hash join... [7.00264s] Building seed filter... [0.05283s] Searching alignments... [25.6443s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.92252s] Building query seed array... [0.560887s] Computing hash join... [6.06283s] Building seed filter... [0.062729s] Searching alignments... [18.4125s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.41655s] Building query seed array... [0.578762s] Computing hash join... [7.39782s] Building seed filter... [0.056723s] Searching alignments... [20.6932s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.87193s] Building query seed array... [0.482691s] Computing hash join... [5.8132s] Building seed filter... [0.027491s] Searching alignments... [18.4594s] Deallocating buffers... [3.59553s] Opening temporary output file... [0.017608s] Computing alignments... [141.569s] Deallocating reference... [0.693891s] Loading reference sequences... [178.751s] Masking reference... [18.3341s] Initializing temporary storage... [0.004537s] Building reference histograms... [3.15656s] Allocating buffers... [0.000312s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.34611s] Building query seed array... [0.568064s] Computing hash join... [1.33373s] Building seed filter... [0.025664s] Searching alignments... [18.7647s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.61311s] Building query seed array... [0.644393s] Computing hash join... [1.2426s] Building seed filter... [0.017181s] Searching alignments... [15.2151s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.19133s] Building query seed array... [0.640375s] Computing hash join... [1.20408s] Building seed filter... [0.020107s] Searching alignments... [14.3411s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.51145s] Building query seed array... [0.533007s] Computing hash join... [1.18425s] Building seed filter... [0.019151s] Searching alignments... [11.3265s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.2827s] Building query seed array... [0.492688s] Computing hash join... [1.21054s] Building seed filter... [0.018581s] Searching alignments... [18.2978s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.1796s] Building query seed array... [0.56605s] Computing hash join... [1.30339s] Building seed filter... [0.01662s] Searching alignments... [7.74373s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.1818s] Building query seed array... [0.553299s] Computing hash join... [1.32448s] Building seed filter... [0.018081s] Searching alignments... [13.0495s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.3997s] Building query seed array... [0.443604s] Computing hash join... [1.30166s] Building seed filter... [0.020246s] Searching alignments... [8.47121s] Deallocating buffers... [0.56971s] Opening temporary output file... [0.025482s] Computing alignments... [75.129s] Deallocating reference... [0.02661s] Loading reference sequences... [0.04549s] Deallocating buffers... [0.262127s] Joining output blocks... [213.067s] Deallocating queries... [0.01722s] Loading query sequences... [1.9e-05s] Closing the input file... [2.8e-05s] Closing the output file... [0.36701s] Closing the database file... [6.9e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 5836.62s Reported 1656411727 pairwise alignments, 1656437498 HSPs. 2522619 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.06115s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.081549s] Opening the output file... [0.001115s] Loading query sequences... [19.4573s] Masking queries... [20.7246s] Building query seed set... [0.122218s] Algorithm: Double-indexed Building query histograms... [0.705096s] Allocating buffers... [0.001049s] Loading reference sequences... [485.505s] Masking reference... [48.8624s] Initializing temporary storage... [0.005381s] Building reference histograms... [9.22969s] Allocating buffers... [0.000474s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.47613s] Building query seed array... [0.399092s] Computing hash join... [5.85742s] Building seed filter... [0.118291s] Searching alignments... [52.7528s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.1659s] Building query seed array... [0.716482s] Computing hash join... [6.38594s] Building seed filter... [0.038173s] Searching alignments... [42.7282s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.41348s] Building query seed array... [0.574903s] Computing hash join... [6.19518s] Building seed filter... [0.056846s] Searching alignments... [37.6449s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.66408s] Building query seed array... [0.533587s] Computing hash join... [6.35623s] Building seed filter... [0.035582s] Searching alignments... [44.7424s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.98788s] Building query seed array... [0.421251s] Computing hash join... [6.53743s] Building seed filter... [0.034259s] Searching alignments... [65.7604s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.8347s] Building query seed array... [0.492335s] Computing hash join... [6.34237s] Building seed filter... [0.036433s] Searching alignments... [32.5234s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [8.97675s] Building query seed array... [0.5126s] Computing hash join... [7.62573s] Building seed filter... [0.051703s] Searching alignments... [30.3845s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.51283s] Building query seed array... [0.448251s] Computing hash join... [7.8864s] Building seed filter... [0.036229s] Searching alignments... [26.9834s] Deallocating buffers... [3.56759s] Opening temporary output file... [0.001665s] Computing alignments... [215.844s] Deallocating reference... [0.401912s] Loading reference sequences... [454.661s] Masking reference... [48.5704s] Initializing temporary storage... [0.004954s] Building reference histograms... [8.97631s] Allocating buffers... [0.001034s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.51415s] Building query seed array... [0.493471s] Computing hash join... [5.96174s] Building seed filter... [0.150676s] Searching alignments... [39.4177s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.9924s] Building query seed array... [0.584848s] Computing hash join... [7.5112s] Building seed filter... [0.041276s] Searching alignments... [33.8189s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.5132s] Building query seed array... [0.56732s] Computing hash join... [7.77399s] Building seed filter... [0.039347s] Searching alignments... [28.5567s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.63636s] Building query seed array... [0.500862s] Computing hash join... [7.18511s] Building seed filter... [0.073118s] Searching alignments... [24.3155s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.14792s] Building query seed array... [0.432365s] Computing hash join... [6.87364s] Building seed filter... [0.059314s] Searching alignments... [35.5934s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.41524s] Building query seed array... [0.522702s] Computing hash join... [6.84923s] Building seed filter... [0.047284s] Searching alignments... [18.843s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.4735s] Building query seed array... [0.513079s] Computing hash join... [5.93264s] Building seed filter... [0.075313s] Searching alignments... [20.2049s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.3202s] Building query seed array... [0.4442s] Computing hash join... [7.53039s] Building seed filter... [0.03697s] Searching alignments... [17.4382s] Deallocating buffers... [3.61016s] Opening temporary output file... [0.000934s] Computing alignments... [150.689s] Deallocating reference... [0.463664s] Loading reference sequences... [462.727s] Masking reference... [48.5838s] Initializing temporary storage... [0.006757s] Building reference histograms... [10.3022s] Allocating buffers... [0.001119s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.48275s] Building query seed array... [0.487948s] Computing hash join... [5.97893s] Building seed filter... [0.092291s] Searching alignments... [49.5202s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.5803s] Building query seed array... [0.549483s] Computing hash join... [6.50828s] Building seed filter... [0.038828s] Searching alignments... [38.9021s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.62327s] Building query seed array... [0.601029s] Computing hash join... [6.2207s] Building seed filter... [0.040233s] Searching alignments... [34.5896s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.74644s] Building query seed array... [0.484853s] Computing hash join... [7.01567s] Building seed filter... [0.064443s] Searching alignments... [37.8551s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.36303s] Building query seed array... [0.436451s] Computing hash join... [6.4837s] Building seed filter... [0.035292s] Searching alignments... [27.7247s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.79419s] Building query seed array... [0.515487s] Computing hash join... [7.77352s] Building seed filter... [0.034466s] Searching alignments... [31.1823s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.43554s] Building query seed array... [0.53073s] Computing hash join... [7.81781s] Building seed filter... [0.034563s] Searching alignments... [32.2257s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.69786s] Building query seed array... [0.4443s] Computing hash join... [7.19057s] Building seed filter... [0.053899s] Searching alignments... [21.5341s] Deallocating buffers... [3.67569s] Opening temporary output file... [0.000758s] Computing alignments... [197s] Deallocating reference... [0.554509s] Loading reference sequences... [438.32s] Masking reference... [48.6506s] Initializing temporary storage... [0.006838s] Building reference histograms... [8.78895s] Allocating buffers... [0.001045s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.5677s] Building query seed array... [0.489923s] Computing hash join... [5.70509s] Building seed filter... [0.089759s] Searching alignments... [38.6918s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.2282s] Building query seed array... [0.601493s] Computing hash join... [6.68266s] Building seed filter... [0.058544s] Searching alignments... [37.5236s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.66289s] Building query seed array... [0.592392s] Computing hash join... [6.99631s] Building seed filter... [0.067676s] Searching alignments... [26.7368s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.70541s] Building query seed array... [0.484845s] Computing hash join... [6.13755s] Building seed filter... [0.035544s] Searching alignments... [32.3334s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.28735s] Building query seed array... [0.436961s] Computing hash join... [7.34686s] Building seed filter... [0.065529s] Searching alignments... [35.647s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.74443s] Building query seed array... [0.517865s] Computing hash join... [7.57799s] Building seed filter... [0.06189s] Searching alignments... [20.297s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.59203s] Building query seed array... [0.517921s] Computing hash join... [6.73006s] Building seed filter... [0.045114s] Searching alignments... [35.1183s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.46522s] Building query seed array... [0.433913s] Computing hash join... [6.38584s] Building seed filter... [0.03549s] Searching alignments... [18.0799s] Deallocating buffers... [3.67607s] Opening temporary output file... [0.001466s] Computing alignments... [163.214s] Deallocating reference... [0.523721s] Loading reference sequences... [417.685s] Masking reference... [48.9735s] Initializing temporary storage... [0.003478s] Building reference histograms... [10.3281s] Allocating buffers... [0.000692s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.52365s] Building query seed array... [0.479571s] Computing hash join... [5.84499s] Building seed filter... [0.140843s] Searching alignments... [36.3422s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.461s] Building query seed array... [0.582949s] Computing hash join... [5.75161s] Building seed filter... [0.07584s] Searching alignments... [26.8365s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [8.82517s] Building query seed array... [0.563918s] Computing hash join... [6.60189s] Building seed filter... [0.052219s] Searching alignments... [25.7312s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [8.28447s] Building query seed array... [0.507431s] Computing hash join... [7.3255s] Building seed filter... [0.060703s] Searching alignments... [26.626s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.04937s] Building query seed array... [0.437471s] Computing hash join... [6.04728s] Building seed filter... [0.033809s] Searching alignments... [30.2332s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.68585s] Building query seed array... [0.519616s] Computing hash join... [7.64106s] Building seed filter... [0.061555s] Searching alignments... [22.8154s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.30685s] Building query seed array... [0.487732s] Computing hash join... [6.02369s] Building seed filter... [0.036082s] Searching alignments... [20.512s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.02642s] Building query seed array... [0.459112s] Computing hash join... [7.35429s] Building seed filter... [0.050809s] Searching alignments... [15.1163s] Deallocating buffers... [3.88356s] Opening temporary output file... [0.002059s] Computing alignments... [139.884s] Deallocating reference... [0.608419s] Loading reference sequences... [180.615s] Masking reference... [17.6929s] Initializing temporary storage... [0.005695s] Building reference histograms... [3.31807s] Allocating buffers... [0.000459s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.32554s] Building query seed array... [0.435118s] Computing hash join... [1.74059s] Building seed filter... [0.025805s] Searching alignments... [15.9334s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.15433s] Building query seed array... [0.6037s] Computing hash join... [1.79596s] Building seed filter... [0.021691s] Searching alignments... [15.1923s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.06393s] Building query seed array... [0.578708s] Computing hash join... [1.78054s] Building seed filter... [0.022382s] Searching alignments... [11.6931s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.28544s] Building query seed array... [0.5134s] Computing hash join... [1.67618s] Building seed filter... [0.023868s] Searching alignments... [10.159s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.26794s] Building query seed array... [0.472075s] Computing hash join... [1.6158s] Building seed filter... [0.019896s] Searching alignments... [22.9903s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.06857s] Building query seed array... [0.507323s] Computing hash join... [1.71729s] Building seed filter... [0.025102s] Searching alignments... [10.2309s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.06425s] Building query seed array... [0.516621s] Computing hash join... [1.64131s] Building seed filter... [0.023981s] Searching alignments... [11.7322s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.26625s] Building query seed array... [0.485659s] Computing hash join... [1.65085s] Building seed filter... [0.024051s] Searching alignments... [10.1768s] Deallocating buffers... [0.173864s] Opening temporary output file... [0.01088s] Computing alignments... [73.23s] Deallocating reference... [0.027313s] Loading reference sequences... [0.049398s] Deallocating buffers... [0.207888s] Joining output blocks... [222.392s] Deallocating queries... [0.01888s] Loading query sequences... [3.2e-05s] Closing the input file... [4.2e-05s] Closing the output file... [0.467819s] Closing the database file... [7.3e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 6039.64s Reported 1491050434 pairwise alignments, 1491070162 HSPs. 2366256 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.120887s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.064354s] Opening the output file... [0.000448s] Loading query sequences... [19.9107s] Masking queries... [20.7714s] Building query seed set... [0.117466s] Algorithm: Double-indexed Building query histograms... [0.739995s] Allocating buffers... [0.001069s] Loading reference sequences... [486.841s] Masking reference... [50.4306s] Initializing temporary storage... [0.005055s] Building reference histograms... [9.22909s] Allocating buffers... [0.000459s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.48267s] Building query seed array... [0.405771s] Computing hash join... [6.75307s] Building seed filter... [0.095943s] Searching alignments... [54.3502s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.5389s] Building query seed array... [0.732589s] Computing hash join... [6.7604s] Building seed filter... [0.045523s] Searching alignments... [45.6101s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.88463s] Building query seed array... [0.592705s] Computing hash join... [6.47118s] Building seed filter... [0.087488s] Searching alignments... [40.8405s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.16112s] Building query seed array... [0.544651s] Computing hash join... [6.47761s] Building seed filter... [0.07743s] Searching alignments... [34.7844s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.90059s] Building query seed array... [0.406515s] Computing hash join... [5.949s] Building seed filter... [0.034384s] Searching alignments... [70.1073s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.4664s] Building query seed array... [0.549242s] Computing hash join... [5.7156s] Building seed filter... [0.037517s] Searching alignments... [22.7249s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.4811s] Building query seed array... [0.531058s] Computing hash join... [7.16709s] Building seed filter... [0.051585s] Searching alignments... [28.7172s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.82522s] Building query seed array... [0.444834s] Computing hash join... [6.26751s] Building seed filter... [0.034427s] Searching alignments... [27.4744s] Deallocating buffers... [3.3047s] Opening temporary output file... [0.000661s] Computing alignments... [205.338s] Deallocating reference... [0.482968s] Loading reference sequences... [462.226s] Masking reference... [48.7107s] Initializing temporary storage... [0.006694s] Building reference histograms... [9.22516s] Allocating buffers... [0.001088s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.47113s] Building query seed array... [0.556592s] Computing hash join... [7.54628s] Building seed filter... [0.078109s] Searching alignments... [37.5057s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [10.3483s] Building query seed array... [0.603705s] Computing hash join... [6.96141s] Building seed filter... [0.046056s] Searching alignments... [30.8023s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.77688s] Building query seed array... [0.614791s] Computing hash join... [6.30396s] Building seed filter... [0.089049s] Searching alignments... [30.4538s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.32012s] Building query seed array... [0.486305s] Computing hash join... [6.51165s] Building seed filter... [0.055234s] Searching alignments... [21.0121s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.24582s] Building query seed array... [0.428457s] Computing hash join... [5.7794s] Building seed filter... [0.077462s] Searching alignments... [33.9884s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.45876s] Building query seed array... [0.514057s] Computing hash join... [6.46112s] Building seed filter... [0.044499s] Searching alignments... [16.4162s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [10.0678s] Building query seed array... [0.518628s] Computing hash join... [6.217s] Building seed filter... [0.061099s] Searching alignments... [21.2929s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.12764s] Building query seed array... [0.455897s] Computing hash join... [7.04094s] Building seed filter... [0.053461s] Searching alignments... [20.7359s] Deallocating buffers... [3.30611s] Opening temporary output file... [0.000621s] Computing alignments... [143.114s] Deallocating reference... [0.572945s] Loading reference sequences... [466.998s] Masking reference... [48.6445s] Initializing temporary storage... [0.006906s] Building reference histograms... [9.01205s] Allocating buffers... [0.001066s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.4772s] Building query seed array... [0.541429s] Computing hash join... [6.27238s] Building seed filter... [0.072648s] Searching alignments... [46.9028s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2444s] Building query seed array... [0.588287s] Computing hash join... [7.02496s] Building seed filter... [0.069848s] Searching alignments... [41.1756s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [10.1303s] Building query seed array... [0.61998s] Computing hash join... [6.31329s] Building seed filter... [0.040738s] Searching alignments... [38.3364s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.01867s] Building query seed array... [0.503396s] Computing hash join... [5.94574s] Building seed filter... [0.040123s] Searching alignments... [31.4982s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.23143s] Building query seed array... [0.446394s] Computing hash join... [7.18342s] Building seed filter... [0.037435s] Searching alignments... [27.9759s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.37639s] Building query seed array... [0.528685s] Computing hash join... [7.24177s] Building seed filter... [0.060098s] Searching alignments... [28.3583s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.39296s] Building query seed array... [0.531195s] Computing hash join... [6.93331s] Building seed filter... [0.036807s] Searching alignments... [28.4653s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.51297s] Building query seed array... [0.447111s] Computing hash join... [7.37899s] Building seed filter... [0.036339s] Searching alignments... [25.4161s] Deallocating buffers... [3.44901s] Opening temporary output file... [0.000682s] Computing alignments... [189.808s] Deallocating reference... [0.697238s] Loading reference sequences... [431.156s] Masking reference... [48.6351s] Initializing temporary storage... [0.006963s] Building reference histograms... [9.41461s] Allocating buffers... [0.001041s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.51286s] Building query seed array... [0.459686s] Computing hash join... [5.67132s] Building seed filter... [0.121511s] Searching alignments... [41.1533s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.1687s] Building query seed array... [0.592106s] Computing hash join... [6.10972s] Building seed filter... [0.067685s] Searching alignments... [38.6446s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.28701s] Building query seed array... [0.581898s] Computing hash join... [5.83463s] Building seed filter... [0.086112s] Searching alignments... [28.7829s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.99551s] Building query seed array... [0.503639s] Computing hash join... [6.51777s] Building seed filter... [0.052321s] Searching alignments... [26.4228s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.10609s] Building query seed array... [0.5049s] Computing hash join... [7.12338s] Building seed filter... [0.055217s] Searching alignments... [33.5299s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [10.157s] Building query seed array... [0.524777s] Computing hash join... [6.03565s] Building seed filter... [0.094124s] Searching alignments... [34.0976s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.56759s] Building query seed array... [0.52804s] Computing hash join... [5.84974s] Building seed filter... [0.034998s] Searching alignments... [48.3832s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.38097s] Building query seed array... [0.514794s] Computing hash join... [7.04532s] Building seed filter... [0.05006s] Searching alignments... [16.6905s] Deallocating buffers... [3.58753s] Opening temporary output file... [0.000592s] Computing alignments... [159.684s] Deallocating reference... [0.62951s] Loading reference sequences... [417.081s] Masking reference... [48.5156s] Initializing temporary storage... [0.006759s] Building reference histograms... [9.36474s] Allocating buffers... [0.001061s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.48846s] Building query seed array... [0.493838s] Computing hash join... [5.89195s] Building seed filter... [0.14774s] Searching alignments... [36.172s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [13.0714s] Building query seed array... [0.589649s] Computing hash join... [6.33413s] Building seed filter... [0.063982s] Searching alignments... [27.8608s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.38786s] Building query seed array... [0.615017s] Computing hash join... [6.10265s] Building seed filter... [0.038705s] Searching alignments... [30.4125s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.77403s] Building query seed array... [0.501649s] Computing hash join... [7.4636s] Building seed filter... [0.039848s] Searching alignments... [21.8979s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [6.98133s] Building query seed array... [0.505435s] Computing hash join... [5.71097s] Building seed filter... [0.035212s] Searching alignments... [30.1937s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.80703s] Building query seed array... [0.521727s] Computing hash join... [7.37106s] Building seed filter... [0.069502s] Searching alignments... [18.133s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.99371s] Building query seed array... [0.585615s] Computing hash join... [6.0142s] Building seed filter... [0.037239s] Searching alignments... [17.6869s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.42573s] Building query seed array... [0.43905s] Computing hash join... [5.92864s] Building seed filter... [0.08326s] Searching alignments... [17.0952s] Deallocating buffers... [3.68124s] Opening temporary output file... [0.000673s] Computing alignments... [132.56s] Deallocating reference... [0.603501s] Loading reference sequences... [184.247s] Masking reference... [18.1462s] Initializing temporary storage... [0.006793s] Building reference histograms... [3.44185s] Allocating buffers... [0.000483s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.3454s] Building query seed array... [0.501337s] Computing hash join... [1.05989s] Building seed filter... [0.023091s] Searching alignments... [15.9682s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.56902s] Building query seed array... [0.58957s] Computing hash join... [1.23636s] Building seed filter... [0.023746s] Searching alignments... [14.5103s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.28166s] Building query seed array... [0.599004s] Computing hash join... [1.22027s] Building seed filter... [0.027937s] Searching alignments... [11.4144s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.54186s] Building query seed array... [0.499877s] Computing hash join... [1.19652s] Building seed filter... [0.022081s] Searching alignments... [9.64631s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.33735s] Building query seed array... [0.443583s] Computing hash join... [1.10191s] Building seed filter... [0.019875s] Searching alignments... [22.8641s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.25791s] Building query seed array... [0.542921s] Computing hash join... [1.14976s] Building seed filter... [0.020562s] Searching alignments... [7.84374s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.23115s] Building query seed array... [0.527365s] Computing hash join... [1.19989s] Building seed filter... [0.021825s] Searching alignments... [10.6987s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.42692s] Building query seed array... [0.451745s] Computing hash join... [1.14637s] Building seed filter... [0.020382s] Searching alignments... [7.70844s] Deallocating buffers... [0.471075s] Opening temporary output file... [0.028856s] Computing alignments... [69.6367s] Deallocating reference... [0.033996s] Loading reference sequences... [0.043096s] Deallocating buffers... [0.255669s] Joining output blocks... [199.484s] Deallocating queries... [0.019635s] Loading query sequences... [3.5e-05s] Closing the input file... [5.8e-05s] Closing the output file... [0.383847s] Closing the database file... [6.9e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 5963.23s Reported 1399755628 pairwise alignments, 1399775385 HSPs. 2324791 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.09207s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.138157s] Opening the output file... [0.000489s] Loading query sequences... [20.038s] Masking queries... [21.6847s] Building query seed set... [0.12197s] Algorithm: Double-indexed Building query histograms... [0.700615s] Allocating buffers... [0.000746s] Loading reference sequences... [520.643s] Masking reference... [50.0405s] Initializing temporary storage... [0.005877s] Building reference histograms... [9.90328s] Allocating buffers... [0.000473s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.50861s] Building query seed array... [0.403661s] Computing hash join... [5.71548s] Building seed filter... [0.115925s] Searching alignments... [53.4574s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.9374s] Building query seed array... [0.717785s] Computing hash join... [5.67537s] Building seed filter... [0.066143s] Searching alignments... [56.4859s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.06728s] Building query seed array... [0.534258s] Computing hash join... [6.89516s] Building seed filter... [0.071823s] Searching alignments... [36.943s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.73364s] Building query seed array... [0.531105s] Computing hash join... [6.91666s] Building seed filter... [0.035268s] Searching alignments... [42.953s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.22261s] Building query seed array... [0.431887s] Computing hash join... [6.26973s] Building seed filter... [0.046539s] Searching alignments... [72.6437s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.07676s] Building query seed array... [0.537857s] Computing hash join... [6.34037s] Building seed filter... [0.065924s] Searching alignments... [30.9738s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.13406s] Building query seed array... [0.528043s] Computing hash join... [5.82679s] Building seed filter... [0.033978s] Searching alignments... [29.7454s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.27122s] Building query seed array... [0.451292s] Computing hash join... [6.91173s] Building seed filter... [0.045645s] Searching alignments... [26.7003s] Deallocating buffers... [3.35231s] Opening temporary output file... [0.001824s] Computing alignments... [222.514s] Deallocating reference... [0.453042s] Loading reference sequences... [494.933s] Masking reference... [48.7227s] Initializing temporary storage... [0.006848s] Building reference histograms... [8.41908s] Allocating buffers... [0.001026s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.47771s] Building query seed array... [0.476087s] Computing hash join... [6.43527s] Building seed filter... [0.103432s] Searching alignments... [38.3966s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.5453s] Building query seed array... [0.585099s] Computing hash join... [6.99601s] Building seed filter... [0.043381s] Searching alignments... [35.3994s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.80387s] Building query seed array... [0.564463s] Computing hash join... [7.0967s] Building seed filter... [0.040716s] Searching alignments... [28.5858s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.06498s] Building query seed array... [0.528068s] Computing hash join... [5.95275s] Building seed filter... [0.091399s] Searching alignments... [23.3035s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [6.7784s] Building query seed array... [0.419054s] Computing hash join... [6.7653s] Building seed filter... [0.037604s] Searching alignments... [28.8104s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [8.84314s] Building query seed array... [0.51326s] Computing hash join... [6.6392s] Building seed filter... [0.055796s] Searching alignments... [19.4357s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.22293s] Building query seed array... [0.50346s] Computing hash join... [7.10433s] Building seed filter... [0.063021s] Searching alignments... [19.943s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.47199s] Building query seed array... [0.458601s] Computing hash join... [5.86416s] Building seed filter... [0.037385s] Searching alignments... [17.7182s] Deallocating buffers... [3.43628s] Opening temporary output file... [0.00068s] Computing alignments... [152.437s] Deallocating reference... [0.585389s] Loading reference sequences... [519.193s] Masking reference... [50.3097s] Initializing temporary storage... [0.005909s] Building reference histograms... [9.09935s] Allocating buffers... [0.001041s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.46369s] Building query seed array... [0.491396s] Computing hash join... [6.80217s] Building seed filter... [0.073576s] Searching alignments... [51.0298s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [9.22891s] Building query seed array... [0.575184s] Computing hash join... [5.70953s] Building seed filter... [0.035454s] Searching alignments... [41.0792s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [8.89382s] Building query seed array... [0.59049s] Computing hash join... [5.78549s] Building seed filter... [0.038761s] Searching alignments... [36.055s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.22332s] Building query seed array... [0.489006s] Computing hash join... [6.30661s] Building seed filter... [0.065182s] Searching alignments... [39.243s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [6.7725s] Building query seed array... [0.437389s] Computing hash join... [5.86576s] Building seed filter... [0.033051s] Searching alignments... [67.1367s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.07904s] Building query seed array... [0.515234s] Computing hash join... [5.96497s] Building seed filter... [0.033501s] Searching alignments... [31.8409s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.43019s] Building query seed array... [0.520162s] Computing hash join... [6.48967s] Building seed filter... [0.048181s] Searching alignments... [31.6233s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.4845s] Building query seed array... [0.443455s] Computing hash join... [6.58522s] Building seed filter... [0.049383s] Searching alignments... [24.4648s] Deallocating buffers... [2.48224s] Opening temporary output file... [0.00206s] Computing alignments... [203.723s] Deallocating reference... [1.66744s] Loading reference sequences... [464.163s] Masking reference... [49.0415s] Initializing temporary storage... [0.005637s] Building reference histograms... [8.44498s] Allocating buffers... [0.001071s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.61306s] Building query seed array... [0.494081s] Computing hash join... [7.01924s] Building seed filter... [0.108481s] Searching alignments... [38.0043s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.0931s] Building query seed array... [0.588437s] Computing hash join... [7.16908s] Building seed filter... [0.042474s] Searching alignments... [37.9288s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.82667s] Building query seed array... [0.59389s] Computing hash join... [7.24514s] Building seed filter... [0.044441s] Searching alignments... [26.5828s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.15466s] Building query seed array... [0.494235s] Computing hash join... [5.82825s] Building seed filter... [0.03566s] Searching alignments... [31.3518s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.69963s] Building query seed array... [0.447098s] Computing hash join... [7.01925s] Building seed filter... [0.047537s] Searching alignments... [38.6194s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.74754s] Building query seed array... [0.496764s] Computing hash join... [7.20806s] Building seed filter... [0.063591s] Searching alignments... [20.706s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.69582s] Building query seed array... [0.535802s] Computing hash join... [5.90865s] Building seed filter... [0.035065s] Searching alignments... [33.7449s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.34035s] Building query seed array... [0.449123s] Computing hash join... [5.77949s] Building seed filter... [0.035936s] Searching alignments... [17.6699s] Deallocating buffers... [3.61483s] Opening temporary output file... [0.00165s] Computing alignments... [161.051s] Deallocating reference... [0.650454s] Loading reference sequences... [37.1033s] Masking reference... [51.1452s] Initializing temporary storage... [0.00657s] Building reference histograms... [9.35205s] Allocating buffers... [0.001059s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.68936s] Building query seed array... [0.471156s] Computing hash join... [7.546s] Building seed filter... [0.077734s] Searching alignments... [37.6669s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.3079s] Building query seed array... [0.540554s] Computing hash join... [7.27883s] Building seed filter... [0.036324s] Searching alignments... [29.7621s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.7438s] Building query seed array... [0.540808s] Computing hash join... [6.7591s] Building seed filter... [0.068256s] Searching alignments... [26.1105s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.15834s] Building query seed array... [0.502272s] Computing hash join... [6.93718s] Building seed filter... [0.050608s] Searching alignments... [27.4244s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.74824s] Building query seed array... [0.447686s] Computing hash join... [7.30249s] Building seed filter... [0.041652s] Searching alignments... [29.5761s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.82037s] Building query seed array... [0.533378s] Computing hash join... [5.99693s] Building seed filter... [0.035155s] Searching alignments... [23.5593s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.46503s] Building query seed array... [0.528309s] Computing hash join... [7.22448s] Building seed filter... [0.035722s] Searching alignments... [20.9648s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [6.61916s] Building query seed array... [0.440917s] Computing hash join... [5.66967s] Building seed filter... [0.035446s] Searching alignments... [15.7856s] Deallocating buffers... [3.69607s] Opening temporary output file... [0.000691s] Computing alignments... [144.019s] Deallocating reference... [0.745572s] Loading reference sequences... [198.244s] Masking reference... [18.0931s] Initializing temporary storage... [0.006859s] Building reference histograms... [3.16384s] Allocating buffers... [0.000451s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.37838s] Building query seed array... [0.506383s] Computing hash join... [1.40268s] Building seed filter... [0.022755s] Searching alignments... [15.5596s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.48125s] Building query seed array... [0.577467s] Computing hash join... [1.48363s] Building seed filter... [0.021353s] Searching alignments... [15.0355s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.16891s] Building query seed array... [0.608928s] Computing hash join... [1.47092s] Building seed filter... [0.021353s] Searching alignments... [12.0202s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.47885s] Building query seed array... [0.546754s] Computing hash join... [1.4899s] Building seed filter... [0.020669s] Searching alignments... [13.9616s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.38011s] Building query seed array... [0.442901s] Computing hash join... [1.51152s] Building seed filter... [0.025352s] Searching alignments... [23.6049s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.17842s] Building query seed array... [0.516324s] Computing hash join... [1.50375s] Building seed filter... [0.019453s] Searching alignments... [9.95191s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.26373s] Building query seed array... [0.516091s] Computing hash join... [1.47442s] Building seed filter... [0.019149s] Searching alignments... [11.4553s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.41247s] Building query seed array... [0.405705s] Computing hash join... [1.50455s] Building seed filter... [0.020972s] Searching alignments... [10.4841s] Deallocating buffers... [0.42362s] Opening temporary output file... [0.002604s] Computing alignments... [74.5697s] Deallocating reference... [0.027028s] Loading reference sequences... [0.175533s] Deallocating buffers... [0.245166s] Joining output blocks... [234.999s] Deallocating queries... [0.016457s] Loading query sequences... [3.2e-05s] Closing the input file... [4.4e-05s] Closing the output file... [0.402729s] Closing the database file... [7.5e-05s] Deallocating taxonomy... [9e-06s] Total time = 5917.59s Reported 1530962817 pairwise alignments, 1530981845 HSPs. 2368365 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.105516s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.120518s] Opening the output file... [0.000438s] Loading query sequences... [19.9226s] Masking queries... [20.4255s] Building query seed set... [0.11778s] Algorithm: Double-indexed Building query histograms... [0.728067s] Allocating buffers... [0.001075s] Loading reference sequences... [538.701s] Masking reference... [50.3864s] Initializing temporary storage... [0.005808s] Building reference histograms... [9.44028s] Allocating buffers... [0.00047s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.48818s] Building query seed array... [0.415632s] Computing hash join... [6.44089s] Building seed filter... [0.124902s] Searching alignments... [53.3828s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.4164s] Building query seed array... [0.739887s] Computing hash join... [7.15784s] Building seed filter... [0.051101s] Searching alignments... [44.4489s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.36952s] Building query seed array... [0.583484s] Computing hash join... [6.37169s] Building seed filter... [0.061327s] Searching alignments... [39.8005s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.77803s] Building query seed array... [0.523827s] Computing hash join... [6.11985s] Building seed filter... [0.069061s] Searching alignments... [34.7262s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.90458s] Building query seed array... [0.425366s] Computing hash join... [7.04864s] Building seed filter... [0.063933s] Searching alignments... [70.4231s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.68284s] Building query seed array... [0.497625s] Computing hash join... [6.8468s] Building seed filter... [0.074257s] Searching alignments... [22.372s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.08171s] Building query seed array... [0.643385s] Computing hash join... [7.23685s] Building seed filter... [0.063327s] Searching alignments... [28.5162s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.81644s] Building query seed array... [0.428953s] Computing hash join... [7.0657s] Building seed filter... [0.08051s] Searching alignments... [27.773s] Deallocating buffers... [3.34015s] Opening temporary output file... [0.001967s] Computing alignments... [213.591s] Deallocating reference... [0.521366s] Loading reference sequences... [524.96s] Masking reference... [48.8343s] Initializing temporary storage... [0.004543s] Building reference histograms... [9.30726s] Allocating buffers... [0.001062s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.48449s] Building query seed array... [0.501918s] Computing hash join... [6.28557s] Building seed filter... [0.103197s] Searching alignments... [37.5755s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.5637s] Building query seed array... [0.579934s] Computing hash join... [7.26106s] Building seed filter... [0.047915s] Searching alignments... [30.5889s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [10.0102s] Building query seed array... [0.613887s] Computing hash join... [5.88224s] Building seed filter... [0.08187s] Searching alignments... [31.1361s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.06193s] Building query seed array... [0.49077s] Computing hash join... [6.62753s] Building seed filter... [0.049069s] Searching alignments... [21.2076s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.49561s] Building query seed array... [0.438879s] Computing hash join... [5.88248s] Building seed filter... [0.094955s] Searching alignments... [34.5642s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.43057s] Building query seed array... [0.536854s] Computing hash join... [6.79798s] Building seed filter... [0.050204s] Searching alignments... [16.52s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [8.75093s] Building query seed array... [0.524877s] Computing hash join... [5.9339s] Building seed filter... [0.042432s] Searching alignments... [20.3615s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.954s] Building query seed array... [0.447526s] Computing hash join... [7.11602s] Building seed filter... [0.067425s] Searching alignments... [20.9105s] Deallocating buffers... [3.85961s] Opening temporary output file... [0.002163s] Computing alignments... [149.951s] Deallocating reference... [0.394458s] Loading reference sequences... [495.608s] Masking reference... [48.5002s] Initializing temporary storage... [0.005197s] Building reference histograms... [9.48705s] Allocating buffers... [0.001053s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.47259s] Building query seed array... [0.490854s] Computing hash join... [6.1821s] Building seed filter... [0.121643s] Searching alignments... [46.3935s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.2015s] Building query seed array... [0.615242s] Computing hash join... [7.33576s] Building seed filter... [0.042932s] Searching alignments... [42.9217s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.4692s] Building query seed array... [0.611757s] Computing hash join... [6.69444s] Building seed filter... [0.039616s] Searching alignments... [37.5855s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.53796s] Building query seed array... [0.480887s] Computing hash join... [6.91079s] Building seed filter... [0.042378s] Searching alignments... [31.3385s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.09056s] Building query seed array... [0.447407s] Computing hash join... [7.54022s] Building seed filter... [0.041751s] Searching alignments... [26.9462s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.89961s] Building query seed array... [0.535918s] Computing hash join... [6.88383s] Building seed filter... [0.075116s] Searching alignments... [28.2904s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.28572s] Building query seed array... [0.533109s] Computing hash join... [6.6303s] Building seed filter... [0.036743s] Searching alignments... [29.2383s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.41728s] Building query seed array... [0.441396s] Computing hash join... [7.56693s] Building seed filter... [0.039234s] Searching alignments... [25.0334s] Deallocating buffers... [3.45561s] Opening temporary output file... [0.000802s] Computing alignments... [187.26s] Deallocating reference... [0.720024s] Loading reference sequences... [47.8164s] Masking reference... [58.5332s] Initializing temporary storage... [0.005544s] Building reference histograms... [10.2581s] Allocating buffers... [0.001006s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [7.25499s] Building query seed array... [0.499654s] Computing hash join... [6.38699s] Building seed filter... [0.101207s] Searching alignments... [42.5813s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.545s] Building query seed array... [0.573378s] Computing hash join... [7.08951s] Building seed filter... [0.040869s] Searching alignments... [40.0217s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.87147s] Building query seed array... [0.630257s] Computing hash join... [7.14416s] Building seed filter... [0.060766s] Searching alignments... [29.7009s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.6359s] Building query seed array... [0.503865s] Computing hash join... [6.84555s] Building seed filter... [0.05801s] Searching alignments... [27.6577s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [6.89805s] Building query seed array... [0.460885s] Computing hash join... [6.15602s] Building seed filter... [0.035226s] Searching alignments... [35.2805s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.84384s] Building query seed array... [0.528019s] Computing hash join... [6.57022s] Building seed filter... [0.048934s] Searching alignments... [35.3182s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.22435s] Building query seed array... [0.553944s] Computing hash join... [6.19305s] Building seed filter... [0.035799s] Searching alignments... [49.3193s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.36352s] Building query seed array... [0.444093s] Computing hash join... [6.05644s] Building seed filter... [0.057581s] Searching alignments... [17.2778s] Deallocating buffers... [2.5678s] Opening temporary output file... [0.000833s] Computing alignments... [158.196s] Deallocating reference... [1.45627s] Loading reference sequences... [473.464s] Masking reference... [48.7207s] Initializing temporary storage... [0.005404s] Building reference histograms... [9.51938s] Allocating buffers... [0.000485s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.44856s] Building query seed array... [0.469816s] Computing hash join... [7.59649s] Building seed filter... [0.096191s] Searching alignments... [35.6866s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.9631s] Building query seed array... [0.644922s] Computing hash join... [7.32601s] Building seed filter... [0.05165s] Searching alignments... [27.9959s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.8259s] Building query seed array... [0.602265s] Computing hash join... [6.44505s] Building seed filter... [0.039827s] Searching alignments... [29.9268s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.80881s] Building query seed array... [0.498208s] Computing hash join... [7.22659s] Building seed filter... [0.06785s] Searching alignments... [21.9192s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.48274s] Building query seed array... [0.411427s] Computing hash join... [6.0679s] Building seed filter... [0.037366s] Searching alignments... [29.2226s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [10.3426s] Building query seed array... [0.556944s] Computing hash join... [7.21974s] Building seed filter... [0.057014s] Searching alignments... [18.9313s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.65179s] Building query seed array... [0.541092s] Computing hash join... [7.1218s] Building seed filter... [0.03646s] Searching alignments... [18.142s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.5093s] Building query seed array... [0.453379s] Computing hash join... [6.97999s] Building seed filter... [0.094262s] Searching alignments... [17.9314s] Deallocating buffers... [3.59451s] Opening temporary output file... [0.00063s] Computing alignments... [134.824s] Deallocating reference... [0.741941s] Loading reference sequences... [215.169s] Masking reference... [18.2867s] Initializing temporary storage... [0.005679s] Building reference histograms... [3.328s] Allocating buffers... [0.000449s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.34466s] Building query seed array... [0.508719s] Computing hash join... [1.08157s] Building seed filter... [0.025904s] Searching alignments... [16.3782s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.58175s] Building query seed array... [0.608968s] Computing hash join... [1.21593s] Building seed filter... [0.022672s] Searching alignments... [14.8046s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.33888s] Building query seed array... [0.607289s] Computing hash join... [1.27586s] Building seed filter... [0.027669s] Searching alignments... [11.3717s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.56655s] Building query seed array... [0.523116s] Computing hash join... [1.35279s] Building seed filter... [0.025003s] Searching alignments... [9.45467s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.41118s] Building query seed array... [0.454796s] Computing hash join... [1.22045s] Building seed filter... [0.020646s] Searching alignments... [22.4707s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.31423s] Building query seed array... [0.52594s] Computing hash join... [1.28286s] Building seed filter... [0.02171s] Searching alignments... [7.77871s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.2139s] Building query seed array... [0.526509s] Computing hash join... [1.34498s] Building seed filter... [0.021184s] Searching alignments... [8.51166s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.59465s] Building query seed array... [0.447512s] Computing hash join... [1.40926s] Building seed filter... [0.022415s] Searching alignments... [7.84038s] Deallocating buffers... [0.632854s] Opening temporary output file... [0.00315s] Computing alignments... [68.1022s] Deallocating reference... [0.028048s] Loading reference sequences... [0.073242s] Deallocating buffers... [0.247028s] Joining output blocks... [201.636s] Deallocating queries... [0.013894s] Loading query sequences... [2.2e-05s] Closing the input file... [3e-05s] Closing the output file... [0.550002s] Closing the database file... [7.1e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 5852.39s Reported 1395001706 pairwise alignments, 1395021022 HSPs. 2324968 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.080764s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.082549s] Opening the output file... [0.001184s] Loading query sequences... [21.8938s] Masking queries... [23.7587s] Building query seed set... [0.127078s] Algorithm: Double-indexed Building query histograms... [0.82238s] Allocating buffers... [0.001071s] Loading reference sequences... [544.139s] Masking reference... [50.431s] Initializing temporary storage... [0.006007s] Building reference histograms... [10.1459s] Allocating buffers... [0.000457s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.49211s] Building query seed array... [0.462516s] Computing hash join... [6.15652s] Building seed filter... [0.103534s] Searching alignments... [67.7945s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.6711s] Building query seed array... [0.599875s] Computing hash join... [7.44138s] Building seed filter... [0.034795s] Searching alignments... [58.773s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.42637s] Building query seed array... [0.584414s] Computing hash join... [7.39998s] Building seed filter... [0.042421s] Searching alignments... [49.6604s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.19365s] Building query seed array... [0.625323s] Computing hash join... [6.75438s] Building seed filter... [0.047773s] Searching alignments... [51.7005s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.64113s] Building query seed array... [0.469325s] Computing hash join... [6.33345s] Building seed filter... [0.06818s] Searching alignments... [77.4025s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [8.82989s] Building query seed array... [0.614455s] Computing hash join... [6.29832s] Building seed filter... [0.030507s] Searching alignments... [32.6971s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [8.9928s] Building query seed array... [0.556255s] Computing hash join... [7.37884s] Building seed filter... [0.06841s] Searching alignments... [43.6772s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.75051s] Building query seed array... [0.506929s] Computing hash join... [6.43162s] Building seed filter... [0.029808s] Searching alignments... [34.1385s] Deallocating buffers... [3.2231s] Opening temporary output file... [0.001781s] Computing alignments... [263.535s] Deallocating reference... [0.530678s] Loading reference sequences... [474.125s] Masking reference... [48.581s] Initializing temporary storage... [0.005712s] Building reference histograms... [9.75999s] Allocating buffers... [0.001043s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.50127s] Building query seed array... [0.526014s] Computing hash join... [6.00708s] Building seed filter... [0.100854s] Searching alignments... [51.3639s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3566s] Building query seed array... [0.677847s] Computing hash join... [6.54187s] Building seed filter... [0.044619s] Searching alignments... [39.4786s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.83964s] Building query seed array... [0.68924s] Computing hash join... [6.2978s] Building seed filter... [0.033098s] Searching alignments... [36.639s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.79315s] Building query seed array... [0.541332s] Computing hash join... [6.4923s] Building seed filter... [0.046703s] Searching alignments... [29.2793s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [6.91767s] Building query seed array... [0.508101s] Computing hash join... [6.76304s] Building seed filter... [0.049932s] Searching alignments... [32.3314s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.59204s] Building query seed array... [0.586624s] Computing hash join... [6.37014s] Building seed filter... [0.050319s] Searching alignments... [27.3895s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.21852s] Building query seed array... [0.598425s] Computing hash join... [7.1583s] Building seed filter... [0.033176s] Searching alignments... [25.8596s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.8429s] Building query seed array... [0.545552s] Computing hash join... [6.34595s] Building seed filter... [0.068101s] Searching alignments... [21.948s] Deallocating buffers... [3.3768s] Opening temporary output file... [0.001402s] Computing alignments... [182.917s] Deallocating reference... [0.686977s] Loading reference sequences... [473.431s] Masking reference... [48.6316s] Initializing temporary storage... [0.005033s] Building reference histograms... [9.24676s] Allocating buffers... [0.001077s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.44456s] Building query seed array... [0.548861s] Computing hash join... [6.96937s] Building seed filter... [0.076693s] Searching alignments... [63.279s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.7773s] Building query seed array... [0.670563s] Computing hash join... [6.92916s] Building seed filter... [0.059186s] Searching alignments... [55.4215s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.17038s] Building query seed array... [0.662605s] Computing hash join... [6.63628s] Building seed filter... [0.031945s] Searching alignments... [44.1016s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.69252s] Building query seed array... [0.553086s] Computing hash join... [6.57597s] Building seed filter... [0.036011s] Searching alignments... [45.9732s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.51931s] Building query seed array... [0.506191s] Computing hash join... [6.32041s] Building seed filter... [0.061102s] Searching alignments... [67.9287s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.29196s] Building query seed array... [0.583005s] Computing hash join... [6.0866s] Building seed filter... [0.069963s] Searching alignments... [37.7875s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [10.0264s] Building query seed array... [0.596919s] Computing hash join... [5.90003s] Building seed filter... [0.075864s] Searching alignments... [53.305s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.4231s] Building query seed array... [0.477195s] Computing hash join... [7.08161s] Building seed filter... [0.046818s] Searching alignments... [27.4956s] Deallocating buffers... [3.46949s] Opening temporary output file... [0.001763s] Computing alignments... [247.829s] Deallocating reference... [0.778668s] Loading reference sequences... [49.489s] Masking reference... [50.9905s] Initializing temporary storage... [0.005714s] Building reference histograms... [9.66176s] Allocating buffers... [0.001054s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.68954s] Building query seed array... [0.535011s] Computing hash join... [6.73262s] Building seed filter... [0.082023s] Searching alignments... [43.1891s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.5698s] Building query seed array... [0.659191s] Computing hash join... [7.23461s] Building seed filter... [0.032425s] Searching alignments... [39.0967s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.55829s] Building query seed array... [0.649309s] Computing hash join... [6.46944s] Building seed filter... [0.047682s] Searching alignments... [31.3854s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.65203s] Building query seed array... [0.530255s] Computing hash join... [7.2674s] Building seed filter... [0.034926s] Searching alignments... [36.1667s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.37526s] Building query seed array... [0.501451s] Computing hash join... [7.24344s] Building seed filter... [0.042667s] Searching alignments... [38.9615s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.48341s] Building query seed array... [0.591711s] Computing hash join... [7.30225s] Building seed filter... [0.031074s] Searching alignments... [22.1208s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.13146s] Building query seed array... [0.605717s] Computing hash join... [5.73447s] Building seed filter... [0.029981s] Searching alignments... [34.5964s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.29461s] Building query seed array... [0.491448s] Computing hash join... [6.06236s] Building seed filter... [0.029816s] Searching alignments... [19.6195s] Deallocating buffers... [3.54207s] Opening temporary output file... [0.001797s] Computing alignments... [180.738s] Deallocating reference... [0.72389s] Loading reference sequences... [33.1568s] Masking reference... [52.519s] Initializing temporary storage... [0.00645s] Building reference histograms... [9.398s] Allocating buffers... [0.001043s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.88369s] Building query seed array... [0.575505s] Computing hash join... [5.55554s] Building seed filter... [0.086119s] Searching alignments... [45.634s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.0426s] Building query seed array... [0.642084s] Computing hash join... [6.68092s] Building seed filter... [0.055302s] Searching alignments... [34.5843s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.196s] Building query seed array... [0.668862s] Computing hash join... [7.0631s] Building seed filter... [0.061758s] Searching alignments... [31.2092s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.45045s] Building query seed array... [0.555803s] Computing hash join... [6.75864s] Building seed filter... [0.052545s] Searching alignments... [31.6439s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.50425s] Building query seed array... [0.493272s] Computing hash join... [5.71942s] Building seed filter... [0.029976s] Searching alignments... [32.9649s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.50869s] Building query seed array... [0.581657s] Computing hash join... [6.43864s] Building seed filter... [0.049574s] Searching alignments... [21.3136s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [10.0666s] Building query seed array... [0.592859s] Computing hash join... [5.83542s] Building seed filter... [0.069835s] Searching alignments... [23.8559s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [6.98615s] Building query seed array... [0.550935s] Computing hash join... [6.8528s] Building seed filter... [0.063707s] Searching alignments... [18.3825s] Deallocating buffers... [3.63896s] Opening temporary output file... [0.000823s] Computing alignments... [165.027s] Deallocating reference... [0.793219s] Loading reference sequences... [16.3688s] Masking reference... [18.568s] Initializing temporary storage... [0.002143s] Building reference histograms... [3.57622s] Allocating buffers... [0.000493s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.3333s] Building query seed array... [0.548904s] Computing hash join... [1.16891s] Building seed filter... [0.022236s] Searching alignments... [20.3558s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.72808s] Building query seed array... [0.682148s] Computing hash join... [1.14181s] Building seed filter... [0.025128s] Searching alignments... [19.7839s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.17477s] Building query seed array... [0.632474s] Computing hash join... [1.31796s] Building seed filter... [0.018878s] Searching alignments... [14.9686s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.52982s] Building query seed array... [0.578125s] Computing hash join... [1.25736s] Building seed filter... [0.019339s] Searching alignments... [16.5581s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.4143s] Building query seed array... [0.476865s] Computing hash join... [1.37951s] Building seed filter... [0.018584s] Searching alignments... [24.703s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.16688s] Building query seed array... [0.602341s] Computing hash join... [1.36645s] Building seed filter... [0.019634s] Searching alignments... [11.0148s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.32428s] Building query seed array... [0.612897s] Computing hash join... [1.35914s] Building seed filter... [0.017636s] Searching alignments... [16.0312s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.36989s] Building query seed array... [0.492598s] Computing hash join... [1.50304s] Building seed filter... [0.021106s] Searching alignments... [12.0528s] Deallocating buffers... [0.54803s] Opening temporary output file... [0.039584s] Computing alignments... [88.2191s] Deallocating reference... [0.026168s] Loading reference sequences... [3.9e-05s] Deallocating buffers... [0.248498s] Joining output blocks... [275.927s] Deallocating queries... [0.031789s] Loading query sequences... [2.4e-05s] Closing the input file... [0.000454s] Closing the output file... [0.381417s] Closing the database file... [2.2e-05s] Deallocating taxonomy... [8e-06s] Total time = 5770s Reported 1929262564 pairwise alignments, 1929284152 HSPs. 2819210 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.064091s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.056487s] Opening the output file... [0.000453s] Loading query sequences... [21.9925s] Masking queries... [23.217s] Building query seed set... [0.126187s] Algorithm: Double-indexed Building query histograms... [0.834638s] Allocating buffers... [0.000702s] Loading reference sequences... [510.443s] Masking reference... [50.4573s] Initializing temporary storage... [0.005765s] Building reference histograms... [10.0262s] Allocating buffers... [0.000505s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.49057s] Building query seed array... [0.462656s] Computing hash join... [7.40305s] Building seed filter... [0.084273s] Searching alignments... [67.7765s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.4549s] Building query seed array... [0.818279s] Computing hash join... [7.81158s] Building seed filter... [0.031958s] Searching alignments... [56.1426s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.88449s] Building query seed array... [0.649569s] Computing hash join... [6.78184s] Building seed filter... [0.064851s] Searching alignments... [49.6474s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.27451s] Building query seed array... [0.589592s] Computing hash join... [7.46622s] Building seed filter... [0.03317s] Searching alignments... [41.6902s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.33775s] Building query seed array... [0.506404s] Computing hash join... [7.47887s] Building seed filter... [0.061858s] Searching alignments... [72.4908s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [8.93707s] Building query seed array... [0.569843s] Computing hash join... [6.27733s] Building seed filter... [0.03293s] Searching alignments... [29.4321s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.28856s] Building query seed array... [0.62229s] Computing hash join... [7.45341s] Building seed filter... [0.031982s] Searching alignments... [36.7212s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.16269s] Building query seed array... [0.476069s] Computing hash join... [7.32199s] Building seed filter... [0.031566s] Searching alignments... [34.0127s] Deallocating buffers... [3.31752s] Opening temporary output file... [0.003535s] Computing alignments... [244.312s] Deallocating reference... [0.528606s] Loading reference sequences... [502.743s] Masking reference... [48.4787s] Initializing temporary storage... [0.005715s] Building reference histograms... [8.82461s] Allocating buffers... [0.000457s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.4836s] Building query seed array... [0.572989s] Computing hash join... [6.17859s] Building seed filter... [0.104456s] Searching alignments... [47.1307s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [10.8915s] Building query seed array... [0.662847s] Computing hash join... [7.43163s] Building seed filter... [0.071967s] Searching alignments... [40.5647s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.83021s] Building query seed array... [0.684788s] Computing hash join... [6.68091s] Building seed filter... [0.036037s] Searching alignments... [38.3735s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.44871s] Building query seed array... [0.648829s] Computing hash join... [6.53747s] Building seed filter... [0.034844s] Searching alignments... [26.0069s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.39536s] Building query seed array... [0.49657s] Computing hash join... [6.75981s] Building seed filter... [0.052931s] Searching alignments... [31.7192s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [8.75266s] Building query seed array... [0.590996s] Computing hash join... [6.89325s] Building seed filter... [0.036623s] Searching alignments... [21.2299s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [10.353s] Building query seed array... [0.659675s] Computing hash join... [7.48468s] Building seed filter... [0.034788s] Searching alignments... [25.4048s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.21617s] Building query seed array... [0.526513s] Computing hash join... [5.92791s] Building seed filter... [0.049603s] Searching alignments... [24.545s] Deallocating buffers... [3.41284s] Opening temporary output file... [0.001664s] Computing alignments... [173.846s] Deallocating reference... [0.616144s] Loading reference sequences... [475.27s] Masking reference... [48.7424s] Initializing temporary storage... [0.004564s] Building reference histograms... [8.79459s] Allocating buffers... [0.001056s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.53422s] Building query seed array... [0.5164s] Computing hash join... [6.98516s] Building seed filter... [0.089009s] Searching alignments... [60.722s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.9839s] Building query seed array... [0.652244s] Computing hash join... [7.05241s] Building seed filter... [0.070601s] Searching alignments... [49.3707s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.38744s] Building query seed array... [0.693953s] Computing hash join... [7.32388s] Building seed filter... [0.043035s] Searching alignments... [46.4669s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [8.00036s] Building query seed array... [0.583053s] Computing hash join... [7.18243s] Building seed filter... [0.052588s] Searching alignments... [37.3674s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.2478s] Building query seed array... [0.553299s] Computing hash join... [7.08153s] Building seed filter... [0.056784s] Searching alignments... [65.6218s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.54896s] Building query seed array... [0.603123s] Computing hash join... [7.34777s] Building seed filter... [0.06562s] Searching alignments... [33.7777s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.34443s] Building query seed array... [0.598413s] Computing hash join... [7.25271s] Building seed filter... [0.031978s] Searching alignments... [33.305s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.3489s] Building query seed array... [0.470749s] Computing hash join... [6.86321s] Building seed filter... [0.058488s] Searching alignments... [29.948s] Deallocating buffers... [3.46529s] Opening temporary output file... [0.001797s] Computing alignments... [229.93s] Deallocating reference... [0.801457s] Loading reference sequences... [34.9766s] Masking reference... [50.2568s] Initializing temporary storage... [0.005907s] Building reference histograms... [10.5037s] Allocating buffers... [0.001064s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.03716s] Building query seed array... [0.584179s] Computing hash join... [5.96154s] Building seed filter... [0.039251s] Searching alignments... [46.197s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.6468s] Building query seed array... [0.650114s] Computing hash join... [6.58714s] Building seed filter... [0.059926s] Searching alignments... [42.9266s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.2831s] Building query seed array... [0.705789s] Computing hash join... [6.37254s] Building seed filter... [0.034731s] Searching alignments... [38.6332s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.13545s] Building query seed array... [0.568872s] Computing hash join... [6.01849s] Building seed filter... [0.035961s] Searching alignments... [29.1815s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.18823s] Building query seed array... [0.519219s] Computing hash join... [6.77215s] Building seed filter... [0.033333s] Searching alignments... [38.018s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.50541s] Building query seed array... [0.60734s] Computing hash join... [6.87233s] Building seed filter... [0.062605s] Searching alignments... [32.6917s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.50276s] Building query seed array... [0.582036s] Computing hash join... [7.03878s] Building seed filter... [0.03146s] Searching alignments... [48.5617s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.60087s] Building query seed array... [0.48094s] Computing hash join... [6.14327s] Building seed filter... [0.054658s] Searching alignments... [32.7494s] Deallocating buffers... [2.12746s] Opening temporary output file... [0.000653s] Computing alignments... [179.211s] Deallocating reference... [1.73074s] Loading reference sequences... [428.17s] Masking reference... [57.2474s] Initializing temporary storage... [0.00549s] Building reference histograms... [9.67632s] Allocating buffers... [0.001066s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [7.30471s] Building query seed array... [0.511211s] Computing hash join... [6.3867s] Building seed filter... [0.073474s] Searching alignments... [44.3117s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.247s] Building query seed array... [0.702212s] Computing hash join... [6.76315s] Building seed filter... [0.035858s] Searching alignments... [34.3082s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.62277s] Building query seed array... [0.65989s] Computing hash join... [6.99993s] Building seed filter... [0.033551s] Searching alignments... [35.5644s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.66251s] Building query seed array... [0.597712s] Computing hash join... [6.77086s] Building seed filter... [0.040933s] Searching alignments... [26.2997s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [6.61598s] Building query seed array... [0.491837s] Computing hash join... [6.16426s] Building seed filter... [0.044889s] Searching alignments... [33.0996s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.48574s] Building query seed array... [0.604935s] Computing hash join... [6.92146s] Building seed filter... [0.032982s] Searching alignments... [21.7995s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [8.67605s] Building query seed array... [0.596096s] Computing hash join... [6.17113s] Building seed filter... [0.031793s] Searching alignments... [23.333s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.20639s] Building query seed array... [0.512681s] Computing hash join... [6.47075s] Building seed filter... [0.045572s] Searching alignments... [20.5362s] Deallocating buffers... [2.10476s] Opening temporary output file... [0.000537s] Computing alignments... [155.267s] Deallocating reference... [1.94845s] Loading reference sequences... [14.2893s] Masking reference... [18.7391s] Initializing temporary storage... [0.005228s] Building reference histograms... [3.43823s] Allocating buffers... [0.000619s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.37849s] Building query seed array... [0.589009s] Computing hash join... [1.06722s] Building seed filter... [0.022393s] Searching alignments... [19.8885s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.06143s] Building query seed array... [0.690941s] Computing hash join... [1.17348s] Building seed filter... [0.022636s] Searching alignments... [16.6166s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.12563s] Building query seed array... [0.642287s] Computing hash join... [1.35577s] Building seed filter... [0.027068s] Searching alignments... [14.2386s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.61874s] Building query seed array... [0.589549s] Computing hash join... [1.19142s] Building seed filter... [0.022955s] Searching alignments... [12.999s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.3977s] Building query seed array... [0.454784s] Computing hash join... [1.16706s] Building seed filter... [0.022407s] Searching alignments... [22.9701s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.36029s] Building query seed array... [0.635229s] Computing hash join... [1.12675s] Building seed filter... [0.01932s] Searching alignments... [8.39768s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.32449s] Building query seed array... [0.632967s] Computing hash join... [1.05202s] Building seed filter... [0.019421s] Searching alignments... [12.8222s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.52014s] Building query seed array... [0.517034s] Computing hash join... [1.07194s] Building seed filter... [0.019069s] Searching alignments... [9.14527s] Deallocating buffers... [0.677691s] Opening temporary output file... [0.010541s] Computing alignments... [81.2297s] Deallocating reference... [0.02791s] Loading reference sequences... [3.7e-05s] Deallocating buffers... [0.270037s] Joining output blocks... [235.543s] Deallocating queries... [0.023084s] Loading query sequences... [2.3e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.45939s] Closing the database file... [7e-05s] Deallocating taxonomy... [3.6e-05s] Total time = 5999.55s Reported 1747061636 pairwise alignments, 1747081812 HSPs. 2789058 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.089286s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.102404s] Opening the output file... [0.000441s] Loading query sequences... [21.8018s] Masking queries... [22.995s] Building query seed set... [0.12753s] Algorithm: Double-indexed Building query histograms... [0.816496s] Allocating buffers... [0.001017s] Loading reference sequences... [516.337s] Masking reference... [50.3902s] Initializing temporary storage... [0.005726s] Building reference histograms... [9.89226s] Allocating buffers... [0.000591s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.44553s] Building query seed array... [0.469868s] Computing hash join... [6.31736s] Building seed filter... [0.106154s] Searching alignments... [67.2378s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.2037s] Building query seed array... [0.809866s] Computing hash join... [7.16536s] Building seed filter... [0.032212s] Searching alignments... [58.5778s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.44545s] Building query seed array... [0.622031s] Computing hash join... [6.73747s] Building seed filter... [0.055876s] Searching alignments... [49.1235s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.13743s] Building query seed array... [0.570075s] Computing hash join... [7.27108s] Building seed filter... [0.040513s] Searching alignments... [52.2334s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.91027s] Building query seed array... [0.49296s] Computing hash join... [6.22013s] Building seed filter... [0.029794s] Searching alignments... [77.5564s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.4826s] Building query seed array... [0.584823s] Computing hash join... [7.94443s] Building seed filter... [0.031458s] Searching alignments... [33.0181s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.73753s] Building query seed array... [0.57547s] Computing hash join... [7.46642s] Building seed filter... [0.036245s] Searching alignments... [37.8243s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.26691s] Building query seed array... [0.456529s] Computing hash join... [6.89815s] Building seed filter... [0.056412s] Searching alignments... [33.9979s] Deallocating buffers... [3.30681s] Opening temporary output file... [0.001752s] Computing alignments... [265.978s] Deallocating reference... [0.495818s] Loading reference sequences... [496.126s] Masking reference... [48.971s] Initializing temporary storage... [0.004353s] Building reference histograms... [9.67627s] Allocating buffers... [0.001088s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.42938s] Building query seed array... [0.536376s] Computing hash join... [5.90292s] Building seed filter... [0.090116s] Searching alignments... [50.4901s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.6s] Building query seed array... [0.658279s] Computing hash join... [7.41679s] Building seed filter... [0.064937s] Searching alignments... [39.8721s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.54039s] Building query seed array... [0.646031s] Computing hash join... [6.326s] Building seed filter... [0.03249s] Searching alignments... [36.1304s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.29161s] Building query seed array... [0.567221s] Computing hash join... [6.82433s] Building seed filter... [0.064466s] Searching alignments... [29.9787s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.39208s] Building query seed array... [0.488361s] Computing hash join... [6.52102s] Building seed filter... [0.059106s] Searching alignments... [33.1563s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.40366s] Building query seed array... [0.619296s] Computing hash join... [6.3909s] Building seed filter... [0.046931s] Searching alignments... [23.1901s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.55526s] Building query seed array... [0.607207s] Computing hash join... [7.28538s] Building seed filter... [0.030647s] Searching alignments... [25.5218s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [6.73599s] Building query seed array... [0.491492s] Computing hash join... [6.7761s] Building seed filter... [0.055922s] Searching alignments... [21.9271s] Deallocating buffers... [3.38175s] Opening temporary output file... [0.001753s] Computing alignments... [183.584s] Deallocating reference... [0.724235s] Loading reference sequences... [512.381s] Masking reference... [48.5948s] Initializing temporary storage... [0.005764s] Building reference histograms... [8.60213s] Allocating buffers... [0.000987s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.47378s] Building query seed array... [0.542387s] Computing hash join... [6.72041s] Building seed filter... [0.09298s] Searching alignments... [63.648s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.0783s] Building query seed array... [0.659252s] Computing hash join... [7.3668s] Building seed filter... [0.035796s] Searching alignments... [55.1407s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.98696s] Building query seed array... [0.667054s] Computing hash join... [6.39224s] Building seed filter... [0.0873s] Searching alignments... [43.5785s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.66881s] Building query seed array... [0.534424s] Computing hash join... [6.70634s] Building seed filter... [0.079682s] Searching alignments... [45.863s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [6.98912s] Building query seed array... [0.481612s] Computing hash join... [7.07586s] Building seed filter... [0.045738s] Searching alignments... [68.5071s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.54585s] Building query seed array... [0.589717s] Computing hash join... [6.50743s] Building seed filter... [0.069656s] Searching alignments... [36.1607s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.54867s] Building query seed array... [0.547228s] Computing hash join... [6.39627s] Building seed filter... [0.036737s] Searching alignments... [35.446s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.17726s] Building query seed array... [0.516049s] Computing hash join... [6.42985s] Building seed filter... [0.047676s] Searching alignments... [27.439s] Deallocating buffers... [3.49077s] Opening temporary output file... [0.00166s] Computing alignments... [246.276s] Deallocating reference... [0.722288s] Loading reference sequences... [458.964s] Masking reference... [48.5305s] Initializing temporary storage... [0.005759s] Building reference histograms... [9.60776s] Allocating buffers... [0.001084s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.47915s] Building query seed array... [0.563898s] Computing hash join... [7.26341s] Building seed filter... [0.082458s] Searching alignments... [44.5154s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.4825s] Building query seed array... [0.651382s] Computing hash join... [6.7366s] Building seed filter... [0.057079s] Searching alignments... [40.5976s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.88977s] Building query seed array... [0.669343s] Computing hash join... [6.81782s] Building seed filter... [0.0322s] Searching alignments... [30.9235s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.66007s] Building query seed array... [0.55481s] Computing hash join... [6.88995s] Building seed filter... [0.065418s] Searching alignments... [37.0422s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.23579s] Building query seed array... [0.487932s] Computing hash join... [6.67037s] Building seed filter... [0.057102s] Searching alignments... [40.1307s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.57742s] Building query seed array... [0.580667s] Computing hash join... [6.07053s] Building seed filter... [0.030943s] Searching alignments... [22.6009s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.64674s] Building query seed array... [0.582166s] Computing hash join... [6.98219s] Building seed filter... [0.041219s] Searching alignments... [35.1779s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.56788s] Building query seed array... [0.510478s] Computing hash join... [5.91086s] Building seed filter... [0.077301s] Searching alignments... [19.9702s] Deallocating buffers... [3.4361s] Opening temporary output file... [0.000625s] Computing alignments... [188.35s] Deallocating reference... [0.655934s] Loading reference sequences... [492.367s] Masking reference... [48.5576s] Initializing temporary storage... [0.006627s] Building reference histograms... [9.41603s] Allocating buffers... [0.00107s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.45344s] Building query seed array... [0.553857s] Computing hash join... [5.72453s] Building seed filter... [0.103959s] Searching alignments... [45.1393s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.4463s] Building query seed array... [0.643558s] Computing hash join... [7.26225s] Building seed filter... [0.066827s] Searching alignments... [33.9044s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.72807s] Building query seed array... [0.659986s] Computing hash join... [7.48307s] Building seed filter... [0.059428s] Searching alignments... [31.7156s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.79856s] Building query seed array... [0.507158s] Computing hash join... [6.81521s] Building seed filter... [0.063082s] Searching alignments... [31.54s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.36271s] Building query seed array... [0.513384s] Computing hash join... [5.73398s] Building seed filter... [0.031221s] Searching alignments... [33.4547s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.53468s] Building query seed array... [0.573242s] Computing hash join... [6.8146s] Building seed filter... [0.055638s] Searching alignments... [21.612s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.43364s] Building query seed array... [0.590483s] Computing hash join... [5.85689s] Building seed filter... [0.072535s] Searching alignments... [24.1103s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.71682s] Building query seed array... [0.491879s] Computing hash join... [7.09767s] Building seed filter... [0.061115s] Searching alignments... [18.0772s] Deallocating buffers... [3.72586s] Opening temporary output file... [0.000844s] Computing alignments... [168.258s] Deallocating reference... [0.655285s] Loading reference sequences... [214.471s] Masking reference... [18.1972s] Initializing temporary storage... [0.006795s] Building reference histograms... [3.55713s] Allocating buffers... [0.00051s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.33693s] Building query seed array... [0.574939s] Computing hash join... [1.20494s] Building seed filter... [0.021566s] Searching alignments... [19.8124s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.51212s] Building query seed array... [0.66238s] Computing hash join... [1.16809s] Building seed filter... [0.031879s] Searching alignments... [17.62s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.21252s] Building query seed array... [0.656855s] Computing hash join... [1.25362s] Building seed filter... [0.019539s] Searching alignments... [14.5417s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.53708s] Building query seed array... [0.506941s] Computing hash join... [1.21497s] Building seed filter... [0.019017s] Searching alignments... [16.9474s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.42521s] Building query seed array... [0.522493s] Computing hash join... [1.19546s] Building seed filter... [0.023347s] Searching alignments... [24.9601s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.23295s] Building query seed array... [0.576519s] Computing hash join... [1.03616s] Building seed filter... [0.017423s] Searching alignments... [11.1029s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.20962s] Building query seed array... [0.64639s] Computing hash join... [1.12659s] Building seed filter... [0.018012s] Searching alignments... [12.2224s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.45841s] Building query seed array... [0.491573s] Computing hash join... [1.05707s] Building seed filter... [0.018373s] Searching alignments... [11.8854s] Deallocating buffers... [0.555306s] Opening temporary output file... [0.002049s] Computing alignments... [87.6797s] Deallocating reference... [0.02683s] Loading reference sequences... [4.2e-05s] Deallocating buffers... [0.262299s] Joining output blocks... [265.389s] Deallocating queries... [0.020455s] Loading query sequences... [3.1e-05s] Closing the input file... [4.1e-05s] Closing the output file... [0.379433s] Closing the database file... [8.8e-05s] Deallocating taxonomy... [3.4e-05s] Total time = 6837.93s Reported 1897420140 pairwise alignments, 1897441861 HSPs. 2806587 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.07952s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.053845s] Opening the output file... [0.000537s] Loading query sequences... [22.0807s] Masking queries... [25.3168s] Building query seed set... [0.125357s] Algorithm: Double-indexed Building query histograms... [0.828186s] Allocating buffers... [0.001076s] Loading reference sequences... [550.725s] Masking reference... [49.8635s] Initializing temporary storage... [0.005401s] Building reference histograms... [10.013s] Allocating buffers... [0.000488s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.55671s] Building query seed array... [0.470888s] Computing hash join... [6.20789s] Building seed filter... [0.100056s] Searching alignments... [67.0818s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.6536s] Building query seed array... [0.906702s] Computing hash join... [4.3898s] Building seed filter... [0.043662s] Searching alignments... [57.1394s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.30618s] Building query seed array... [0.657082s] Computing hash join... [4.23343s] Building seed filter... [0.035317s] Searching alignments... [48.516s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.42155s] Building query seed array... [0.615722s] Computing hash join... [5.38951s] Building seed filter... [0.045683s] Searching alignments... [40.2146s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.20744s] Building query seed array... [0.525064s] Computing hash join... [5.80982s] Building seed filter... [0.031381s] Searching alignments... [71.5658s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.96501s] Building query seed array... [0.602507s] Computing hash join... [5.56977s] Building seed filter... [0.065467s] Searching alignments... [29.0375s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.25736s] Building query seed array... [0.613859s] Computing hash join... [5.97392s] Building seed filter... [0.042165s] Searching alignments... [36.4184s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.45838s] Building query seed array... [0.526627s] Computing hash join... [6.19228s] Building seed filter... [0.045293s] Searching alignments... [32.7943s] Deallocating buffers... [3.3887s] Opening temporary output file... [0.000657s] Computing alignments... [249.52s] Deallocating reference... [0.517564s] Loading reference sequences... [525.428s] Masking reference... [48.6092s] Initializing temporary storage... [0.005487s] Building reference histograms... [9.13716s] Allocating buffers... [0.00104s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.46947s] Building query seed array... [0.551649s] Computing hash join... [5.34393s] Building seed filter... [0.106247s] Searching alignments... [48.4178s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [10.8433s] Building query seed array... [0.646578s] Computing hash join... [7.25993s] Building seed filter... [0.069854s] Searching alignments... [39.8314s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.51728s] Building query seed array... [0.704882s] Computing hash join... [6.15408s] Building seed filter... [0.039157s] Searching alignments... [37.4606s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.49571s] Building query seed array... [0.558273s] Computing hash join... [6.22099s] Building seed filter... [0.043841s] Searching alignments... [26.467s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.17565s] Building query seed array... [0.512367s] Computing hash join... [6.2432s] Building seed filter... [0.066378s] Searching alignments... [31.2527s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.45907s] Building query seed array... [0.641365s] Computing hash join... [6.00802s] Building seed filter... [0.033892s] Searching alignments... [20.891s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.62938s] Building query seed array... [0.628871s] Computing hash join... [6.82133s] Building seed filter... [0.049382s] Searching alignments... [25.2376s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.34573s] Building query seed array... [0.473402s] Computing hash join... [6.2853s] Building seed filter... [0.049358s] Searching alignments... [24.3111s] Deallocating buffers... [3.44114s] Opening temporary output file... [0.000548s] Computing alignments... [177.414s] Deallocating reference... [0.706232s] Loading reference sequences... [520.993s] Masking reference... [48.4306s] Initializing temporary storage... [0.005478s] Building reference histograms... [8.48312s] Allocating buffers... [0.001052s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.4947s] Building query seed array... [0.565531s] Computing hash join... [5.9096s] Building seed filter... [0.107049s] Searching alignments... [60.5566s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.6799s] Building query seed array... [0.677995s] Computing hash join... [6.21301s] Building seed filter... [0.061522s] Searching alignments... [49.3728s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.23049s] Building query seed array... [0.681971s] Computing hash join... [6.86587s] Building seed filter... [0.05136s] Searching alignments... [45.1045s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.54551s] Building query seed array... [0.566026s] Computing hash join... [6.90983s] Building seed filter... [0.045931s] Searching alignments... [37.8131s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.09449s] Building query seed array... [0.509785s] Computing hash join... [6.57245s] Building seed filter... [0.057047s] Searching alignments... [63.8137s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.91324s] Building query seed array... [0.588565s] Computing hash join... [5.85685s] Building seed filter... [0.080318s] Searching alignments... [33.2224s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.35826s] Building query seed array... [0.608301s] Computing hash join... [5.88659s] Building seed filter... [0.032775s] Searching alignments... [33.5728s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.32223s] Building query seed array... [0.503949s] Computing hash join... [6.5161s] Building seed filter... [0.050603s] Searching alignments... [30.7482s] Deallocating buffers... [3.40375s] Opening temporary output file... [0.000743s] Computing alignments... [233.257s] Deallocating reference... [0.809254s] Loading reference sequences... [502.19s] Masking reference... [49.9169s] Initializing temporary storage... [0.005816s] Building reference histograms... [8.56038s] Allocating buffers... [0.001067s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.11008s] Building query seed array... [0.564259s] Computing hash join... [7.71459s] Building seed filter... [0.066483s] Searching alignments... [44.8874s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.6321s] Building query seed array... [0.657881s] Computing hash join... [6.55666s] Building seed filter... [0.049234s] Searching alignments... [43.5764s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [10.3692s] Building query seed array... [0.681635s] Computing hash join... [6.17611s] Building seed filter... [0.036451s] Searching alignments... [36.7921s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.63672s] Building query seed array... [0.566009s] Computing hash join... [5.89477s] Building seed filter... [0.032705s] Searching alignments... [29.7461s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [8.18514s] Building query seed array... [0.4936s] Computing hash join... [7.07295s] Building seed filter... [0.033507s] Searching alignments... [38.012s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [10.2569s] Building query seed array... [0.565234s] Computing hash join... [6.99313s] Building seed filter... [0.061042s] Searching alignments... [32.8201s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.97804s] Building query seed array... [0.620531s] Computing hash join... [7.47023s] Building seed filter... [0.042722s] Searching alignments... [50.2528s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.5307s] Building query seed array... [0.51071s] Computing hash join... [6.00843s] Building seed filter... [0.055284s] Searching alignments... [33.6779s] Deallocating buffers... [3.58793s] Opening temporary output file... [0.000978s] Computing alignments... [184.429s] Deallocating reference... [1.23907s] Loading reference sequences... [476.186s] Masking reference... [48.5624s] Initializing temporary storage... [0.003371s] Building reference histograms... [8.4672s] Allocating buffers... [0.000454s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.53741s] Building query seed array... [0.554921s] Computing hash join... [5.56683s] Building seed filter... [0.086221s] Searching alignments... [42.214s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.754s] Building query seed array... [0.666787s] Computing hash join... [6.23735s] Building seed filter... [0.053682s] Searching alignments... [32.7782s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.75135s] Building query seed array... [0.709296s] Computing hash join... [5.67164s] Building seed filter... [0.075007s] Searching alignments... [34.482s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.73519s] Building query seed array... [0.534663s] Computing hash join... [5.64113s] Building seed filter... [0.033564s] Searching alignments... [25.6385s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.86014s] Building query seed array... [0.528637s] Computing hash join... [6.88425s] Building seed filter... [0.042749s] Searching alignments... [30.9112s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.25963s] Building query seed array... [0.58946s] Computing hash join... [5.92169s] Building seed filter... [0.032582s] Searching alignments... [20.3153s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.9271s] Building query seed array... [0.596859s] Computing hash join... [7.29835s] Building seed filter... [0.037241s] Searching alignments... [21.8768s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [6.95224s] Building query seed array... [0.506738s] Computing hash join... [5.68204s] Building seed filter... [0.03377s] Searching alignments... [19.6459s] Deallocating buffers... [3.67081s] Opening temporary output file... [0.000713s] Computing alignments... [156.403s] Deallocating reference... [0.762546s] Loading reference sequences... [191.946s] Masking reference... [18.1115s] Initializing temporary storage... [0.004632s] Building reference histograms... [3.14614s] Allocating buffers... [0.000468s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.32572s] Building query seed array... [0.517835s] Computing hash join... [1.85805s] Building seed filter... [0.031917s] Searching alignments... [19.9755s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.51037s] Building query seed array... [0.65862s] Computing hash join... [1.65106s] Building seed filter... [0.021991s] Searching alignments... [16.4925s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.13376s] Building query seed array... [0.838607s] Computing hash join... [1.81032s] Building seed filter... [0.019907s] Searching alignments... [13.8877s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.47503s] Building query seed array... [0.538361s] Computing hash join... [1.68983s] Building seed filter... [0.022282s] Searching alignments... [11.8675s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.38948s] Building query seed array... [0.498346s] Computing hash join... [1.61192s] Building seed filter... [0.019683s] Searching alignments... [22.7092s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.18564s] Building query seed array... [0.647598s] Computing hash join... [1.66327s] Building seed filter... [0.025767s] Searching alignments... [8.64035s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.1966s] Building query seed array... [0.564273s] Computing hash join... [1.5909s] Building seed filter... [0.019578s] Searching alignments... [13.3165s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.38265s] Building query seed array... [0.44235s] Computing hash join... [1.67675s] Building seed filter... [0.020903s] Searching alignments... [9.22988s] Deallocating buffers... [0.455437s] Opening temporary output file... [0.01207s] Computing alignments... [80.7442s] Deallocating reference... [0.026964s] Loading reference sequences... [0.031126s] Deallocating buffers... [0.189129s] Joining output blocks... [238.983s] Deallocating queries... [0.032465s] Loading query sequences... [2.1e-05s] Closing the input file... [3.3e-05s] Closing the output file... [0.391221s] Closing the database file... [6.8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 6779.99s Reported 1757529889 pairwise alignments, 1757550279 HSPs. 2774903 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.074788s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.047821s] Opening the output file... [0.001243s] Loading query sequences... [23.449s] Masking queries... [24.4427s] Building query seed set... [0.12375s] Algorithm: Double-indexed Building query histograms... [0.852708s] Allocating buffers... [0.000861s] Loading reference sequences... [542.122s] Masking reference... [50.2538s] Initializing temporary storage... [0.005663s] Building reference histograms... [9.41045s] Allocating buffers... [0.00045s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.49511s] Building query seed array... [0.474207s] Computing hash join... [6.69193s] Building seed filter... [0.124295s] Searching alignments... [67.0321s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.0975s] Building query seed array... [0.86199s] Computing hash join... [6.79323s] Building seed filter... [0.05185s] Searching alignments... [54.2699s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.51631s] Building query seed array... [0.665835s] Computing hash join... [6.3234s] Building seed filter... [0.043877s] Searching alignments... [46.4247s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.95831s] Building query seed array... [0.607509s] Computing hash join... [6.30526s] Building seed filter... [0.077371s] Searching alignments... [40.6644s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [6.79857s] Building query seed array... [0.431698s] Computing hash join... [6.52821s] Building seed filter... [0.04111s] Searching alignments... [35.7991s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.33919s] Building query seed array... [0.653058s] Computing hash join... [6.68283s] Building seed filter... [0.05874s] Searching alignments... [32.023s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.29159s] Building query seed array... [0.624973s] Computing hash join... [7.35915s] Building seed filter... [0.043698s] Searching alignments... [36.16s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.60393s] Building query seed array... [0.503277s] Computing hash join... [7.25298s] Building seed filter... [0.060602s] Searching alignments... [30.9645s] Deallocating buffers... [3.0933s] Opening temporary output file... [0.00069s] Computing alignments... [227.631s] Deallocating reference... [0.524614s] Loading reference sequences... [475.696s] Masking reference... [48.66s] Initializing temporary storage... [0.004982s] Building reference histograms... [9.59316s] Allocating buffers... [0.001073s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.42502s] Building query seed array... [0.571382s] Computing hash join... [6.08515s] Building seed filter... [0.124556s] Searching alignments... [49.6544s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.2162s] Building query seed array... [0.713153s] Computing hash join... [7.09611s] Building seed filter... [0.086759s] Searching alignments... [38.0189s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.96667s] Building query seed array... [0.670109s] Computing hash join... [6.7043s] Building seed filter... [0.063208s] Searching alignments... [35.5062s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.88102s] Building query seed array... [0.60911s] Computing hash join... [6.79543s] Building seed filter... [0.078378s] Searching alignments... [29.1778s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.33927s] Building query seed array... [0.511968s] Computing hash join... [6.10304s] Building seed filter... [0.085518s] Searching alignments... [39.046s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.46831s] Building query seed array... [0.619588s] Computing hash join... [5.92157s] Building seed filter... [0.101925s] Searching alignments... [22.2253s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.38194s] Building query seed array... [0.606258s] Computing hash join... [6.79741s] Building seed filter... [0.062379s] Searching alignments... [25.7706s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.04789s] Building query seed array... [0.508069s] Computing hash join... [5.64983s] Building seed filter... [0.083803s] Searching alignments... [21.7173s] Deallocating buffers... [3.28873s] Opening temporary output file... [0.000862s] Computing alignments... [166.348s] Deallocating reference... [0.613924s] Loading reference sequences... [496.018s] Masking reference... [48.5121s] Initializing temporary storage... [0.004547s] Building reference histograms... [9.51704s] Allocating buffers... [0.001045s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.49721s] Building query seed array... [0.599511s] Computing hash join... [5.82802s] Building seed filter... [0.160311s] Searching alignments... [63.5319s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.4755s] Building query seed array... [0.697671s] Computing hash join... [6.57366s] Building seed filter... [0.06799s] Searching alignments... [46.7604s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.54805s] Building query seed array... [0.702048s] Computing hash join... [7.58261s] Building seed filter... [0.047298s] Searching alignments... [42.7049s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.43423s] Building query seed array... [0.539328s] Computing hash join... [6.57999s] Building seed filter... [0.071666s] Searching alignments... [38.4555s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.25062s] Building query seed array... [0.544892s] Computing hash join... [6.3481s] Building seed filter... [0.057385s] Searching alignments... [32.9548s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.43472s] Building query seed array... [0.627989s] Computing hash join... [7.13581s] Building seed filter... [0.043551s] Searching alignments... [27.6635s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.26482s] Building query seed array... [0.622786s] Computing hash join... [6.83331s] Building seed filter... [0.082851s] Searching alignments... [30.1874s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.84988s] Building query seed array... [0.516744s] Computing hash join... [5.65011s] Building seed filter... [0.044784s] Searching alignments... [26.3614s] Deallocating buffers... [3.71159s] Opening temporary output file... [0.000689s] Computing alignments... [214.006s] Deallocating reference... [0.616391s] Loading reference sequences... [36.2064s] Masking reference... [50.982s] Initializing temporary storage... [0.005943s] Building reference histograms... [9.07925s] Allocating buffers... [0.001038s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.74792s] Building query seed array... [0.59703s] Computing hash join... [5.45153s] Building seed filter... [0.116686s] Searching alignments... [42.5466s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.0314s] Building query seed array... [0.685153s] Computing hash join... [6.18483s] Building seed filter... [0.05987s] Searching alignments... [31.6609s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.65318s] Building query seed array... [0.717264s] Computing hash join... [5.68533s] Building seed filter... [0.089953s] Searching alignments... [28.5472s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.58351s] Building query seed array... [0.722702s] Computing hash join... [6.69782s] Building seed filter... [0.082327s] Searching alignments... [29.8221s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.39779s] Building query seed array... [0.522333s] Computing hash join... [6.71699s] Building seed filter... [0.067065s] Searching alignments... [50.9179s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.35217s] Building query seed array... [0.594052s] Computing hash join... [7.03312s] Building seed filter... [0.052324s] Searching alignments... [17.6799s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.65747s] Building query seed array... [0.617058s] Computing hash join... [6.70107s] Building seed filter... [0.069947s] Searching alignments... [30.0198s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.19553s] Building query seed array... [0.525469s] Computing hash join... [7.20506s] Building seed filter... [0.059856s] Searching alignments... [17.931s] Deallocating buffers... [3.37008s] Opening temporary output file... [0.000698s] Computing alignments... [153.482s] Deallocating reference... [0.682529s] Loading reference sequences... [449.583s] Masking reference... [49.1338s] Initializing temporary storage... [0.005458s] Building reference histograms... [10.8602s] Allocating buffers... [0.001036s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [7.01196s] Building query seed array... [0.577804s] Computing hash join... [7.33343s] Building seed filter... [0.093023s] Searching alignments... [42.2871s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.5023s] Building query seed array... [0.751923s] Computing hash join... [6.91828s] Building seed filter... [0.073339s] Searching alignments... [32.6372s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.39195s] Building query seed array... [0.706326s] Computing hash join... [7.39046s] Building seed filter... [0.044847s] Searching alignments... [29.5081s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.77669s] Building query seed array... [0.545141s] Computing hash join... [6.18286s] Building seed filter... [0.087818s] Searching alignments... [26.9856s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.25046s] Building query seed array... [0.52743s] Computing hash join... [6.1962s] Building seed filter... [0.060833s] Searching alignments... [34.2054s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.71653s] Building query seed array... [0.595031s] Computing hash join... [6.85638s] Building seed filter... [0.075724s] Searching alignments... [17.8744s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.22978s] Building query seed array... [0.603775s] Computing hash join... [5.75624s] Building seed filter... [0.042707s] Searching alignments... [21.2362s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.76076s] Building query seed array... [0.549071s] Computing hash join... [6.59822s] Building seed filter... [0.070843s] Searching alignments... [17.7527s] Deallocating buffers... [3.41581s] Opening temporary output file... [0.002411s] Computing alignments... [146.884s] Deallocating reference... [0.743432s] Loading reference sequences... [19.3058s] Masking reference... [18.7153s] Initializing temporary storage... [0.005164s] Building reference histograms... [3.46349s] Allocating buffers... [0.000443s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.37949s] Building query seed array... [0.61092s] Computing hash join... [1.19776s] Building seed filter... [0.026625s] Searching alignments... [19.801s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.56879s] Building query seed array... [0.726047s] Computing hash join... [1.15909s] Building seed filter... [0.024927s] Searching alignments... [15.4136s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.15031s] Building query seed array... [0.691191s] Computing hash join... [1.25507s] Building seed filter... [0.031008s] Searching alignments... [13.967s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.38723s] Building query seed array... [0.606714s] Computing hash join... [1.33579s] Building seed filter... [0.025754s] Searching alignments... [11.4781s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.28448s] Building query seed array... [0.504283s] Computing hash join... [1.25193s] Building seed filter... [0.025274s] Searching alignments... [25.328s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.157s] Building query seed array... [0.626533s] Computing hash join... [1.30368s] Building seed filter... [0.024001s] Searching alignments... [9.55073s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.26969s] Building query seed array... [0.622789s] Computing hash join... [1.28973s] Building seed filter... [0.023441s] Searching alignments... [10.7701s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.48254s] Building query seed array... [0.527457s] Computing hash join... [1.31533s] Building seed filter... [0.023782s] Searching alignments... [10.3838s] Deallocating buffers... [0.467686s] Opening temporary output file... [0.014744s] Computing alignments... [76.0094s] Deallocating reference... [0.027223s] Loading reference sequences... [0.031832s] Deallocating buffers... [0.291248s] Joining output blocks... [234.933s] Deallocating queries... [0.017616s] Loading query sequences... [2e-05s] Closing the input file... [2.8e-05s] Closing the output file... [0.417655s] Closing the database file... [2.8e-05s] Deallocating taxonomy... [1e-05s] Total time = 5800s Reported 1794058500 pairwise alignments, 1794085209 HSPs. 2893170 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.088979s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.165807s] Opening the output file... [0.001038s] Loading query sequences... [23.5762s] Masking queries... [24.3202s] Building query seed set... [0.123233s] Algorithm: Double-indexed Building query histograms... [0.853075s] Allocating buffers... [0.000906s] Loading reference sequences... [527.257s] Masking reference... [50.5073s] Initializing temporary storage... [0.003309s] Building reference histograms... [9.26411s] Allocating buffers... [0.00053s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.46655s] Building query seed array... [0.490587s] Computing hash join... [6.07635s] Building seed filter... [0.116762s] Searching alignments... [69.5809s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.1761s] Building query seed array... [0.869069s] Computing hash join... [7.1393s] Building seed filter... [0.049279s] Searching alignments... [53.6115s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [10.0786s] Building query seed array... [0.685287s] Computing hash join... [5.95137s] Building seed filter... [0.090836s] Searching alignments... [49.4958s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.36429s] Building query seed array... [0.617649s] Computing hash join... [7.17418s] Building seed filter... [0.056652s] Searching alignments... [38.4643s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.26451s] Building query seed array... [0.493487s] Computing hash join... [6.99603s] Building seed filter... [0.052019s] Searching alignments... [33.447s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.60155s] Building query seed array... [0.642315s] Computing hash join... [5.98269s] Building seed filter... [0.099155s] Searching alignments... [29.1067s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.31731s] Building query seed array... [0.675154s] Computing hash join... [7.04616s] Building seed filter... [0.080977s] Searching alignments... [35.5422s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.27701s] Building query seed array... [0.526667s] Computing hash join... [7.0796s] Building seed filter... [0.048477s] Searching alignments... [31.9966s] Deallocating buffers... [3.10018s] Opening temporary output file... [0.000805s] Computing alignments... [218.212s] Deallocating reference... [0.51646s] Loading reference sequences... [471.607s] Masking reference... [49.2033s] Initializing temporary storage... [0.003841s] Building reference histograms... [10.1143s] Allocating buffers... [0.001154s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.45546s] Building query seed array... [0.584216s] Computing hash join... [5.42121s] Building seed filter... [0.221529s] Searching alignments... [47.9777s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.7628s] Building query seed array... [0.717325s] Computing hash join... [7.27621s] Building seed filter... [0.080169s] Searching alignments... [38.0034s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [10.4232s] Building query seed array... [0.712004s] Computing hash join... [6.39688s] Building seed filter... [0.046344s] Searching alignments... [37.438s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.21205s] Building query seed array... [0.670662s] Computing hash join... [6.55056s] Building seed filter... [0.06061s] Searching alignments... [26.7374s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.40304s] Building query seed array... [0.533927s] Computing hash join... [6.88905s] Building seed filter... [0.094497s] Searching alignments... [32.8291s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [10.2918s] Building query seed array... [0.628051s] Computing hash join... [5.93136s] Building seed filter... [0.069438s] Searching alignments... [20.822s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.50436s] Building query seed array... [0.623766s] Computing hash join... [7.73624s] Building seed filter... [0.070273s] Searching alignments... [25.0694s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.1146s] Building query seed array... [0.506875s] Computing hash join... [6.51579s] Building seed filter... [0.059998s] Searching alignments... [24.3362s] Deallocating buffers... [4.37549s] Opening temporary output file... [0.000706s] Computing alignments... [176.71s] Deallocating reference... [0.065326s] Loading reference sequences... [471.717s] Masking reference... [48.5769s] Initializing temporary storage... [0.004529s] Building reference histograms... [9.04311s] Allocating buffers... [0.001042s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.60159s] Building query seed array... [0.540424s] Computing hash join... [6.03032s] Building seed filter... [0.131711s] Searching alignments... [61.2414s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.8436s] Building query seed array... [0.726477s] Computing hash join... [6.31473s] Building seed filter... [0.100448s] Searching alignments... [46.9124s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.59378s] Building query seed array... [0.713402s] Computing hash join... [6.91814s] Building seed filter... [0.061699s] Searching alignments... [44.661s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.70654s] Building query seed array... [0.613947s] Computing hash join... [7.06447s] Building seed filter... [0.0636s] Searching alignments... [34.2681s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.50763s] Building query seed array... [0.525283s] Computing hash join... [5.86559s] Building seed filter... [0.097519s] Searching alignments... [32.8267s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.26805s] Building query seed array... [0.602642s] Computing hash join... [5.91731s] Building seed filter... [0.044885s] Searching alignments... [25.0699s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.47284s] Building query seed array... [0.646513s] Computing hash join... [6.95635s] Building seed filter... [0.061561s] Searching alignments... [30.623s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.54999s] Building query seed array... [0.571744s] Computing hash join... [5.72338s] Building seed filter... [0.048097s] Searching alignments... [29.4228s] Deallocating buffers... [3.26898s] Opening temporary output file... [0.000734s] Computing alignments... [198.153s] Deallocating reference... [0.648915s] Loading reference sequences... [452.787s] Masking reference... [49.786s] Initializing temporary storage... [0.005724s] Building reference histograms... [9.68117s] Allocating buffers... [0.00107s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [7.21709s] Building query seed array... [0.58717s] Computing hash join... [5.43311s] Building seed filter... [0.098593s] Searching alignments... [40.6585s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [10.5642s] Building query seed array... [0.700726s] Computing hash join... [5.73492s] Building seed filter... [0.06045s] Searching alignments... [31.6546s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [8.73871s] Building query seed array... [0.736519s] Computing hash join... [5.66895s] Building seed filter... [0.04593s] Searching alignments... [32.155s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.20144s] Building query seed array... [0.583083s] Computing hash join... [6.28048s] Building seed filter... [0.077857s] Searching alignments... [26.2106s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [6.90896s] Building query seed array... [0.524998s] Computing hash join... [5.60572s] Building seed filter... [0.08056s] Searching alignments... [40.3728s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.45001s] Building query seed array... [0.615658s] Computing hash join... [5.79415s] Building seed filter... [0.073053s] Searching alignments... [28.7807s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [8.70155s] Building query seed array... [0.635742s] Computing hash join... [5.74549s] Building seed filter... [0.041467s] Searching alignments... [38.6621s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.12926s] Building query seed array... [0.520854s] Computing hash join... [5.71113s] Building seed filter... [0.043912s] Searching alignments... [20.3045s] Deallocating buffers... [2.18413s] Opening temporary output file... [0.000704s] Computing alignments... [148.676s] Deallocating reference... [1.73737s] Loading reference sequences... [476.973s] Masking reference... [48.5438s] Initializing temporary storage... [0.003534s] Building reference histograms... [9.0146s] Allocating buffers... [0.00105s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [6.46941s] Building query seed array... [0.576144s] Computing hash join... [7.36232s] Building seed filter... [0.144758s] Searching alignments... [39.4463s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.6904s] Building query seed array... [0.69933s] Computing hash join... [7.20087s] Building seed filter... [0.044258s] Searching alignments... [32.061s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.8412s] Building query seed array... [0.679362s] Computing hash join... [7.68949s] Building seed filter... [0.050005s] Searching alignments... [33.2561s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.31497s] Building query seed array... [0.618495s] Computing hash join... [7.14402s] Building seed filter... [0.067041s] Searching alignments... [23.3029s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [6.73578s] Building query seed array... [0.495117s] Computing hash join... [6.30184s] Building seed filter... [0.085771s] Searching alignments... [28.3977s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [10.3733s] Building query seed array... [0.629196s] Computing hash join... [6.53623s] Building seed filter... [0.072995s] Searching alignments... [17.3177s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [8.98586s] Building query seed array... [0.616665s] Computing hash join... [7.28071s] Building seed filter... [0.079929s] Searching alignments... [21.2855s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.52233s] Building query seed array... [0.548905s] Computing hash join... [5.62071s] Building seed filter... [0.048069s] Searching alignments... [20.1726s] Deallocating buffers... [3.57429s] Opening temporary output file... [0.000651s] Computing alignments... [141.369s] Deallocating reference... [0.678242s] Loading reference sequences... [195.907s] Masking reference... [18.007s] Initializing temporary storage... [0.005748s] Building reference histograms... [3.71563s] Allocating buffers... [0.000446s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.36821s] Building query seed array... [0.59376s] Computing hash join... [1.07722s] Building seed filter... [0.028737s] Searching alignments... [19.7294s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.49252s] Building query seed array... [0.720037s] Computing hash join... [1.12555s] Building seed filter... [0.026866s] Searching alignments... [14.0939s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.09484s] Building query seed array... [0.713295s] Computing hash join... [1.14597s] Building seed filter... [0.025884s] Searching alignments... [14.1856s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.43219s] Building query seed array... [0.588358s] Computing hash join... [1.13767s] Building seed filter... [0.026584s] Searching alignments... [10.4536s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.27153s] Building query seed array... [0.491627s] Computing hash join... [1.11123s] Building seed filter... [0.023854s] Searching alignments... [20.4197s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.10537s] Building query seed array... [0.680612s] Computing hash join... [1.13347s] Building seed filter... [0.026783s] Searching alignments... [8.21756s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.07878s] Building query seed array... [0.550939s] Computing hash join... [1.12737s] Building seed filter... [0.024087s] Searching alignments... [10.2532s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.43748s] Building query seed array... [0.505917s] Computing hash join... [1.14907s] Building seed filter... [0.029335s] Searching alignments... [8.85797s] Deallocating buffers... [0.361022s] Opening temporary output file... [0.009157s] Computing alignments... [70.5974s] Deallocating reference... [0.432067s] Loading reference sequences... [0.039097s] Deallocating buffers... [0.305353s] Joining output blocks... [214.528s] Deallocating queries... [0.018282s] Loading query sequences... [2.4e-05s] Closing the input file... [3.1e-05s] Closing the output file... [0.442301s] Closing the database file... [7.8e-05s] Deallocating taxonomy... [3.5e-05s] Total time = 6297.17s Reported 1687668971 pairwise alignments, 1687692876 HSPs. 2804493 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.065141s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.061911s] Opening the output file... [0.000467s] Loading query sequences... [23.2538s] Masking queries... [24.4125s] Building query seed set... [0.12177s] Algorithm: Double-indexed Building query histograms... [0.854175s] Allocating buffers... [0.00076s] Loading reference sequences... [522.025s] Masking reference... [50.4332s] Initializing temporary storage... [0.004575s] Building reference histograms... [9.86508s] Allocating buffers... [0.000484s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.47372s] Building query seed array... [0.47931s] Computing hash join... [6.93172s] Building seed filter... [0.125779s] Searching alignments... [66.3862s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.8594s] Building query seed array... [0.869608s] Computing hash join... [6.66686s] Building seed filter... [0.054084s] Searching alignments... [53.7396s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.12887s] Building query seed array... [0.657758s] Computing hash join... [6.23911s] Building seed filter... [0.044518s] Searching alignments... [47.1159s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.94711s] Building query seed array... [0.610078s] Computing hash join... [6.08729s] Building seed filter... [0.074809s] Searching alignments... [39.0195s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.07794s] Building query seed array... [0.49175s] Computing hash join... [6.33639s] Building seed filter... [0.042689s] Searching alignments... [36.3202s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [9.27571s] Building query seed array... [0.620644s] Computing hash join... [6.53936s] Building seed filter... [0.059391s] Searching alignments... [31.4757s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.41289s] Building query seed array... [0.6473s] Computing hash join... [7.16535s] Building seed filter... [0.042848s] Searching alignments... [36.8695s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [7.23741s] Building query seed array... [0.520606s] Computing hash join... [6.74361s] Building seed filter... [0.054421s] Searching alignments... [31.3032s] Deallocating buffers... [3.17672s] Opening temporary output file... [0.000779s] Computing alignments... [231.913s] Deallocating reference... [0.566295s] Loading reference sequences... [477.151s] Masking reference... [48.4617s] Initializing temporary storage... [0.005431s] Building reference histograms... [8.43476s] Allocating buffers... [0.001078s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.50969s] Building query seed array... [0.573576s] Computing hash join... [6.17015s] Building seed filter... [0.109932s] Searching alignments... [50.0806s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.3128s] Building query seed array... [0.696542s] Computing hash join... [7.02776s] Building seed filter... [0.051012s] Searching alignments... [38.4616s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.67929s] Building query seed array... [0.717494s] Computing hash join... [7.07579s] Building seed filter... [0.053139s] Searching alignments... [35.9279s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.29575s] Building query seed array... [0.612944s] Computing hash join... [6.89413s] Building seed filter... [0.05825s] Searching alignments... [28.24s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [7.60271s] Building query seed array... [0.492792s] Computing hash join... [5.86641s] Building seed filter... [0.047915s] Searching alignments... [40.1693s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.31272s] Building query seed array... [0.625186s] Computing hash join... [6.68553s] Building seed filter... [0.04695s] Searching alignments... [22.2074s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.66645s] Building query seed array... [0.618315s] Computing hash join... [7.33196s] Building seed filter... [0.059326s] Searching alignments... [25.331s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [7.18908s] Building query seed array... [0.505277s] Computing hash join... [6.36907s] Building seed filter... [0.046698s] Searching alignments... [22.6172s] Deallocating buffers... [3.24411s] Opening temporary output file... [0.000852s] Computing alignments... [169.234s] Deallocating reference... [0.663428s] Loading reference sequences... [500.912s] Masking reference... [48.6246s] Initializing temporary storage... [0.005588s] Building reference histograms... [9.02573s] Allocating buffers... [0.00105s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.5659s] Building query seed array... [0.569213s] Computing hash join... [6.04199s] Building seed filter... [0.099595s] Searching alignments... [62.845s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.9333s] Building query seed array... [0.704083s] Computing hash join... [6.01491s] Building seed filter... [0.077051s] Searching alignments... [46.5728s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.41306s] Building query seed array... [0.71227s] Computing hash join... [7.64749s] Building seed filter... [0.051432s] Searching alignments... [42.9601s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.42725s] Building query seed array... [0.592276s] Computing hash join... [6.3236s] Building seed filter... [0.06144s] Searching alignments... [39.2584s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.26687s] Building query seed array... [0.498934s] Computing hash join... [6.78489s] Building seed filter... [0.061646s] Searching alignments... [33.3289s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.72156s] Building query seed array... [0.599638s] Computing hash join... [7.08381s] Building seed filter... [0.04456s] Searching alignments... [27.7716s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.34057s] Building query seed array... [0.638537s] Computing hash join... [6.79646s] Building seed filter... [0.070938s] Searching alignments... [30.2912s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.69073s] Building query seed array... [0.520352s] Computing hash join... [5.79216s] Building seed filter... [0.0481s] Searching alignments... [27.2529s] Deallocating buffers... [3.62486s] Opening temporary output file... [0.00067s] Computing alignments... [213.59s] Deallocating reference... [0.651589s] Loading reference sequences... [40.9805s] Masking reference... [51.3666s] Initializing temporary storage... [0.00581s] Building reference histograms... [8.60804s] Allocating buffers... [0.001064s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.73181s] Building query seed array... [0.588315s] Computing hash join... [5.6737s] Building seed filter... [0.08881s] Searching alignments... [42.7854s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.165s] Building query seed array... [0.659046s] Computing hash join... [6.55075s] Building seed filter... [0.061064s] Searching alignments... [32.1837s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.81292s] Building query seed array... [0.715467s] Computing hash join... [5.70056s] Building seed filter... [0.096599s] Searching alignments... [28.81s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.29207s] Building query seed array... [0.582898s] Computing hash join... [6.54966s] Building seed filter... [0.077553s] Searching alignments... [29.0196s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.18433s] Building query seed array... [0.54326s] Computing hash join... [6.59032s] Building seed filter... [0.078945s] Searching alignments... [53.6848s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [9.5025s] Building query seed array... [0.634188s] Computing hash join... [7.25055s] Building seed filter... [0.040773s] Searching alignments... [17.5791s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [8.88085s] Building query seed array... [0.628304s] Computing hash join... [5.94416s] Building seed filter... [0.042514s] Searching alignments... [28.512s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.58922s] Building query seed array... [0.563838s] Computing hash join... [7.51961s] Building seed filter... [0.045274s] Searching alignments... [17.7274s] Deallocating buffers... [3.54901s] Opening temporary output file... [0.000528s] Computing alignments... [159.585s] Deallocating reference... [0.702175s] Loading reference sequences... [38.3123s] Masking reference... [53.4921s] Initializing temporary storage... [0.005861s] Building reference histograms... [9.50344s] Allocating buffers... [0.001045s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [7.27486s] Building query seed array... [0.594226s] Computing hash join... [7.30434s] Building seed filter... [0.103429s] Searching alignments... [44.1412s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [10.2405s] Building query seed array... [0.703524s] Computing hash join... [6.97024s] Building seed filter... [0.068984s] Searching alignments... [34.0422s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [10.2659s] Building query seed array... [0.734422s] Computing hash join... [7.28772s] Building seed filter... [0.046885s] Searching alignments... [30.343s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.76868s] Building query seed array... [0.592688s] Computing hash join... [6.59443s] Building seed filter... [0.07515s] Searching alignments... [27.373s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.06804s] Building query seed array... [0.505952s] Computing hash join... [6.10799s] Building seed filter... [0.054686s] Searching alignments... [34.6248s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [10.4398s] Building query seed array... [0.621548s] Computing hash join... [7.03366s] Building seed filter... [0.08042s] Searching alignments... [18.3087s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [9.76572s] Building query seed array... [0.58989s] Computing hash join... [5.94295s] Building seed filter... [0.040746s] Searching alignments... [21.2928s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [7.87017s] Building query seed array... [0.550585s] Computing hash join... [6.15222s] Building seed filter... [0.092901s] Searching alignments... [18.5255s] Deallocating buffers... [3.5444s] Opening temporary output file... [0.015337s] Computing alignments... [150.145s] Deallocating reference... [0.914276s] Loading reference sequences... [16.6265s] Masking reference... [18.5475s] Initializing temporary storage... [0.005406s] Building reference histograms... [3.17183s] Allocating buffers... [0.000443s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.41121s] Building query seed array... [0.597726s] Computing hash join... [1.31319s] Building seed filter... [0.035207s] Searching alignments... [19.9553s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [3.76216s] Building query seed array... [0.701347s] Computing hash join... [1.06732s] Building seed filter... [0.028374s] Searching alignments... [15.8178s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.24586s] Building query seed array... [0.703002s] Computing hash join... [1.33931s] Building seed filter... [0.032989s] Searching alignments... [13.3508s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.49932s] Building query seed array... [0.583251s] Computing hash join... [1.16416s] Building seed filter... [0.028365s] Searching alignments... [11.417s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.40674s] Building query seed array... [0.497679s] Computing hash join... [1.01507s] Building seed filter... [0.024213s] Searching alignments... [10.193s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.34533s] Building query seed array... [0.642561s] Computing hash join... [1.14511s] Building seed filter... [0.024203s] Searching alignments... [9.36778s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.27252s] Building query seed array... [0.595205s] Computing hash join... [1.19348s] Building seed filter... [0.024145s] Searching alignments... [10.5168s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.67129s] Building query seed array... [0.579471s] Computing hash join... [1.15436s] Building seed filter... [0.025231s] Searching alignments... [10.6062s] Deallocating buffers... [0.756716s] Opening temporary output file... [0.015259s] Computing alignments... [75.0116s] Deallocating reference... [0.43872s] Loading reference sequences... [0.119158s] Deallocating buffers... [0.320968s] Joining output blocks... [233.808s] Deallocating queries... [0.018784s] Loading query sequences... [2.4e-05s] Closing the input file... [3e-05s] Closing the output file... [0.719009s] Closing the database file... [6.9e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 5390.84s Reported 1790065462 pairwise alignments, 1790091956 HSPs. 2896373 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.185895s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.120614s] Opening the output file... [0.001062s] Loading query sequences... [23.5108s] Masking queries... [25.9851s] Building query seed set... [0.125938s] Algorithm: Double-indexed Building query histograms... [0.865317s] Allocating buffers... [0.001051s] Loading reference sequences... [573.122s] Masking reference... [50.7073s] Initializing temporary storage... [0.00421s] Building reference histograms... [9.43962s] Allocating buffers... [0.00046s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [6.60868s] Building query seed array... [0.485035s] Computing hash join... [6.19871s] Building seed filter... [0.100147s] Searching alignments... [66.8283s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [10.9617s] Building query seed array... [0.789649s] Computing hash join... [6.87528s] Building seed filter... [0.060925s] Searching alignments... [52.9429s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [9.56081s] Building query seed array... [0.648678s] Computing hash join... [6.3462s] Building seed filter... [0.050351s] Searching alignments... [50.3436s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [7.38156s] Building query seed array... [0.590441s] Computing hash join... [6.3152s] Building seed filter... [0.097312s] Searching alignments... [36.9599s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [7.01629s] Building query seed array... [0.536504s] Computing hash join... [6.22332s] Building seed filter... [0.042578s] Searching alignments... [33.1682s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [8.36432s] Building query seed array... [0.589842s] Computing hash join... [7.29197s] Building seed filter... [0.043873s] Searching alignments... [29.4595s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [9.65624s] Building query seed array... [0.617505s] Computing hash join... [7.09894s] Building seed filter... [0.064719s] Searching alignments... [36.1853s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [6.81196s] Building query seed array... [0.536175s] Computing hash join... [5.63752s] Building seed filter... [0.094081s] Searching alignments... [32.4538s] Deallocating buffers... [3.25596s] Opening temporary output file... [0.00082s] Computing alignments... [223.308s] Deallocating reference... [0.551366s] Loading reference sequences... [525.636s] Masking reference... [48.7638s] Initializing temporary storage... [0.005809s] Building reference histograms... [10.2574s] Allocating buffers... [0.001063s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [6.435s] Building query seed array... [0.557273s] Computing hash join... [7.03141s] Building seed filter... [0.087309s] Searching alignments... [47.5172s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [10.3827s] Building query seed array... [0.694096s] Computing hash join... [7.50247s] Building seed filter... [0.051952s] Searching alignments... [39.6644s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [9.78549s] Building query seed array... [0.689357s] Computing hash join... [6.92075s] Building seed filter... [0.072162s] Searching alignments... [37.9179s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [7.44421s] Building query seed array... [0.617336s] Computing hash join... [6.38155s] Building seed filter... [0.068177s] Searching alignments... [26.5763s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [6.82778s] Building query seed array... [0.558632s] Computing hash join... [6.09108s] Building seed filter... [0.105799s] Searching alignments... [32.6397s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [9.58825s] Building query seed array... [0.618212s] Computing hash join... [6.092s] Building seed filter... [0.046053s] Searching alignments... [21.0418s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [9.32672s] Building query seed array... [0.636071s] Computing hash join... [6.67735s] Building seed filter... [0.075614s] Searching alignments... [24.7596s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [6.98025s] Building query seed array... [0.509267s] Computing hash join... [6.76658s] Building seed filter... [0.083216s] Searching alignments... [24.0292s] Deallocating buffers... [3.37115s] Opening temporary output file... [0.00081s] Computing alignments... [163.338s] Deallocating reference... [0.671613s] Loading reference sequences... [505.772s] Masking reference... [48.6181s] Initializing temporary storage... [0.005358s] Building reference histograms... [9.27656s] Allocating buffers... [0.001044s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [6.5253s] Building query seed array... [0.578377s] Computing hash join... [7.34435s] Building seed filter... [0.084478s] Searching alignments... [60.6572s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [10.2986s] Building query seed array... [0.769478s] Computing hash join... [6.76139s] Building seed filter... [0.08215s] Searching alignments... [47.0593s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [9.2909s] Building query seed array... [0.723769s] Computing hash join... [7.39616s] Building seed filter... [0.055116s] Searching alignments... [46.7748s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [7.85875s] Building query seed array... [0.598453s] Computing hash join... [6.14s] Building seed filter... [0.048536s] Searching alignments... [34.1324s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [7.0121s] Building query seed array... [0.547271s] Computing hash join... [6.7028s] Building seed filter... [0.075984s] Searching alignments... [33.4276s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [9.1002s] Building query seed array... [0.624894s] Computing hash join... [7.74664s] Building seed filter... [0.046905s] Searching alignments... [24.6523s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [9.79129s] Building query seed array... [0.626093s] Computing hash join... [5.88483s] Building seed filter... [0.096587s] Searching alignments... [31.1084s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [7.22361s] Building query seed array... [0.521302s] Computing hash join... [6.45182s] Building seed filter... [0.057189s] Searching alignments... [30.9178s] Deallocating buffers... [3.37465s] Opening temporary output file... [0.000619s] Computing alignments... [207.715s] Deallocating reference... [0.815694s] Loading reference sequences... [467.485s] Masking reference... [48.6286s] Initializing temporary storage... [0.004481s] Building reference histograms... [9.3357s] Allocating buffers... [0.001065s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [6.92278s] Building query seed array... [0.610454s] Computing hash join... [5.93291s] Building seed filter... [0.151725s] Searching alignments... [39.5663s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.6408s] Building query seed array... [0.698637s] Computing hash join... [6.73574s] Building seed filter... [0.066346s] Searching alignments... [30.4883s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [9.74574s] Building query seed array... [0.724767s] Computing hash join... [6.22193s] Building seed filter... [0.052605s] Searching alignments... [31.1714s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [7.66927s] Building query seed array... [0.594994s] Computing hash join... [6.78048s] Building seed filter... [0.087894s] Searching alignments... [25.2597s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [7.23911s] Building query seed array... [0.517598s] Computing hash join... [6.3295s] Building seed filter... [0.099045s] Searching alignments... [40.0412s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [10.1797s] Building query seed array... [0.644132s] Computing hash join... [6.2646s] Building seed filter... [0.094052s] Searching alignments... [28.6291s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [9.17505s] Building query seed array... [0.634245s] Computing hash join... [6.41455s] Building seed filter... [0.044438s] Searching alignments... [38.6184s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [7.61501s] Building query seed array... [0.522743s] Computing hash join... [6.46753s] Building seed filter... [0.047573s] Searching alignments... [19.5143s] Deallocating buffers... [3.50322s] Opening temporary output file... [0.000692s] Computing alignments... [155.746s] Deallocating reference... [0.802996s] Loading reference sequences... [36.2762s] Masking reference... [53.4109s] Initializing temporary storage... [0.004859s] Building reference histograms... [9.67409s] Allocating buffers... [0.001103s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [7.19381s] Building query seed array... [0.607599s] Computing hash join... [5.63782s] Building seed filter... [0.182928s] Searching alignments... [39.9819s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.5691s] Building query seed array... [0.699877s] Computing hash join... [6.30938s] Building seed filter... [0.070436s] Searching alignments... [32.3827s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [9.93658s] Building query seed array... [0.71691s] Computing hash join... [5.78127s] Building seed filter... [0.10358s] Searching alignments... [33.7901s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [7.61261s] Building query seed array... [0.59548s] Computing hash join... [5.80003s] Building seed filter... [0.047987s] Searching alignments... [24.254s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [7.63214s] Building query seed array... [0.528868s] Computing hash join... [6.52387s] Building seed filter... [0.083146s] Searching alignments... [22.0672s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [9.73142s] Building query seed array... [0.606372s] Computing hash join... [6.64948s] Building seed filter... [0.064213s] Searching alignments... [16.8917s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [8.59644s] Building query seed array... [0.647801s] Computing hash join... [5.70704s] Building seed filter... [0.044889s] Searching alignments... [22.4575s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [8.04868s] Building query seed array... [0.519659s] Computing hash join... [6.98101s] Building seed filter... [0.058589s] Searching alignments... [20.2649s] Deallocating buffers... [3.76s] Opening temporary output file... [0.000632s] Computing alignments... [142.203s] Deallocating reference... [0.844159s] Loading reference sequences... [192.528s] Masking reference... [17.5074s] Initializing temporary storage... [0.005709s] Building reference histograms... [3.23113s] Allocating buffers... [0.000463s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [2.3386s] Building query seed array... [0.590265s] Computing hash join... [1.13807s] Building seed filter... [0.030623s] Searching alignments... [20.3604s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.15258s] Building query seed array... [0.735398s] Computing hash join... [1.02828s] Building seed filter... [0.02721s] Searching alignments... [14.5802s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [3.15659s] Building query seed array... [0.699029s] Computing hash join... [1.11895s] Building seed filter... [0.028021s] Searching alignments... [13.6278s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [2.76268s] Building query seed array... [0.592434s] Computing hash join... [1.06131s] Building seed filter... [0.029217s] Searching alignments... [10.2562s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [2.37513s] Building query seed array... [0.489795s] Computing hash join... [1.07994s] Building seed filter... [0.024775s] Searching alignments... [9.31962s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [3.30331s] Building query seed array... [0.695869s] Computing hash join... [1.02611s] Building seed filter... [0.027054s] Searching alignments... [8.2228s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [3.45273s] Building query seed array... [0.640286s] Computing hash join... [1.06522s] Building seed filter... [0.02468s] Searching alignments... [10.3533s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [2.5047s] Building query seed array... [0.534061s] Computing hash join... [1.08953s] Building seed filter... [0.024095s] Searching alignments... [8.95307s] Deallocating buffers... [0.826901s] Opening temporary output file... [0.019343s] Computing alignments... [71.3595s] Deallocating reference... [0.030458s] Loading reference sequences... [0.033076s] Deallocating buffers... [0.311584s] Joining output blocks... [218.566s] Deallocating queries... [0.019936s] Loading query sequences... [2e-05s] Closing the input file... [2.7e-05s] Closing the output file... [0.515813s] Closing the database file... [7e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 6004.58s Reported 1682125892 pairwise alignments, 1682149660 HSPs. 2807010 queries aligned.