Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 380820_reads_1.daa, 380820_reads_2.daa Output file: 380820.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 380820_reads_1.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 380820_reads_2.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4134.6s) Total reads: 5,441,526 Alignments: 168,254,508 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 2,289,851 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,441,526 With hits: 5,441,526 Alignments: 168,254,508 Assig. Taxonomy: 5,433,437 Assig. EGGNOG: 1,573,997 Assig. INTERPRO2GO: 3,490,711 Tax. ass. by mate: 4,065 MinSupport set to: 2720 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,374 Binning reads: Writing classification tables Numb. Tax. classes: 117 Numb. EGG. classes: 1,712 Numb. INT. classes: 4,985 Binning reads: Syncing Class. Taxonomy: 117 Class. EGGNOG: 1,712 Class. INTERPRO2GO: 4,985 100% (17373.6s) Total time: 21521s Peak memory: 19.5 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 380821_reads_1.daa, 380821_reads_2.daa Output file: 380821.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 380821_reads_1.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 380821_reads_2.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2831.8s) Total reads: 5,172,806 Alignments: 154,771,000 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 2,167,479 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,172,806 With hits: 5,172,806 Alignments: 154,771,000 Assig. Taxonomy: 5,165,622 Assig. EGGNOG: 1,479,201 Assig. INTERPRO2GO: 3,343,576 Tax. ass. by mate: 3,549 MinSupport set to: 2586 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,809 Binning reads: Writing classification tables Numb. Tax. classes: 130 Numb. EGG. classes: 1,855 Numb. INT. classes: 5,285 Binning reads: Syncing Class. Taxonomy: 130 Class. EGGNOG: 1,855 Class. INTERPRO2GO: 5,285 100% (16335.9s) Total time: 19179s Peak memory: 19.4 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 380822_reads_1.daa, 380822_reads_2.daa Output file: 380822.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 380822_reads_1.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 380822_reads_2.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2266.8s) Total reads: 5,131,242 Alignments: 151,590,112 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 2,152,113 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,131,242 With hits: 5,131,242 Alignments: 151,590,112 Assig. Taxonomy: 5,123,410 Assig. EGGNOG: 1,408,027 Assig. INTERPRO2GO: 3,337,358 Tax. ass. by mate: 3,789 MinSupport set to: 2565 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,360 Binning reads: Writing classification tables Numb. Tax. classes: 120 Numb. EGG. classes: 1,732 Numb. INT. classes: 4,905 Binning reads: Syncing Class. Taxonomy: 120 Class. EGGNOG: 1,732 Class. INTERPRO2GO: 4,905 100% (16207.1s) Total time: 18484s Peak memory: 20.4 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 380823_reads_1.daa, 380823_reads_2.daa Output file: 380823.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 380823_reads_1.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 380823_reads_2.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2139.9s) Total reads: 4,691,047 Alignments: 133,774,590 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 1,958,224 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 4,691,047 With hits: 4,691,047 Alignments: 133,774,590 Assig. Taxonomy: 4,683,211 Assig. EGGNOG: 1,216,029 Assig. INTERPRO2GO: 2,991,604 Tax. ass. by mate: 4,539 MinSupport set to: 2345 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,913 Binning reads: Writing classification tables Numb. Tax. classes: 142 Numb. EGG. classes: 1,855 Numb. INT. classes: 5,392 Binning reads: Syncing Class. Taxonomy: 142 Class. EGGNOG: 1,855 Class. INTERPRO2GO: 5,392 100% (14488.5s) Total time: 16639s Peak memory: 20.3 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 380824_reads_1.daa, 380824_reads_2.daa Output file: 380824.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 380824_reads_1.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 380824_reads_2.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2531.3s) Total reads: 5,608,268 Alignments: 162,586,089 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 2,314,462 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,608,268 With hits: 5,608,268 Alignments: 162,586,089 Assig. Taxonomy: 5,599,629 Assig. EGGNOG: 1,455,887 Assig. INTERPRO2GO: 3,515,743 Tax. ass. by mate: 4,282 MinSupport set to: 2804 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,589 Binning reads: Writing classification tables Numb. Tax. classes: 127 Numb. EGG. classes: 1,858 Numb. INT. classes: 5,255 Binning reads: Syncing Class. Taxonomy: 127 Class. EGGNOG: 1,858 Class. INTERPRO2GO: 5,255 100% (17253.1s) Total time: 19795s Peak memory: 20.4 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 380825_reads_1.daa, 380825_reads_2.daa Output file: 380825.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 380825_reads_1.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 380825_reads_2.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2592.5s) Total reads: 5,697,663 Alignments: 165,988,288 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 2,399,824 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,697,663 With hits: 5,697,663 Alignments: 165,988,288 Assig. Taxonomy: 5,688,674 Assig. EGGNOG: 1,575,486 Assig. INTERPRO2GO: 3,560,065 Tax. ass. by mate: 3,795 MinSupport set to: 2848 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,440 Binning reads: Writing classification tables Numb. Tax. classes: 134 Numb. EGG. classes: 1,925 Numb. INT. classes: 5,848 Binning reads: Syncing Class. Taxonomy: 134 Class. EGGNOG: 1,925 Class. INTERPRO2GO: 5,848 100% (18102.5s) Total time: 20705s Peak memory: 20.9 of 52.4G --------------------- Total runtime was: 116357 seconds