FastQCFastQC Report
Tue 14 Apr 2020
380825_S6_L001_R1_001.fastp-trim.202004145835.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380825_S6_L001_R1_001.fastp-trim.202004145835.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10184344
Sequences flagged as poor quality0
Sequence length15-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG138420.13591449778208592No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAGGCTTGGTA114850.11277113184707822No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG106320.10439553102291124No Hit
CTGGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAG102170.10032064902756622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)