FastQCFastQC Report
Tue 14 Apr 2020
380824_S5_L002_R1_001.fastp-trim.202004145558.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380824_S5_L002_R1_001.fastp-trim.202004145558.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9824608
Sequences flagged as poor quality0
Sequence length15-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG148040.15068285676130794No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA130560.13289079828935668No Hit
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG128480.13077366547347233No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG115140.11719551558698321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)