FastQCFastQC Report
Tue 14 Apr 2020
380823_S4_L002_R1_001.fastp-trim.202004145106.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380823_S4_L002_R1_001.fastp-trim.202004145106.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8777230
Sequences flagged as poor quality0
Sequence length15-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG146110.166464818627289No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA142340.1621696138759039No Hit
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG131540.14986504854037094No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG112220.12785354832902865No Hit
CTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAGT96170.10956759706650047No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAGGCCTGTTC94310.10744847748093647No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAGGCTTGGTA91430.10416726005812768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)