FastQCFastQC Report
Tue 14 Apr 2020
380823_S4_L001_R1_001.fastp-trim.202004144852.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380823_S4_L001_R1_001.fastp-trim.202004144852.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8760917
Sequences flagged as poor quality0
Sequence length15-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG149520.17066706601603462No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA145840.16646659248112955No Hit
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG132960.15176493510896177No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG114480.1306712527923732No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAGGCCTGTTC96740.11042223091486884No Hit
CTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAGT96380.11001131502558466No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAGGCTTGGTA88650.1011880377362324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)