FastQCFastQC Report
Tue 14 Apr 2020
380822_S3_L002_R2_001.fastp-trim.202004144633.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380822_S3_L002_R2_001.fastp-trim.202004144633.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9327431
Sequences flagged as poor quality0
Sequence length15-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTC434250.46556227540037554No Hit
CGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGG274440.29422892541365353No Hit
CTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCT231290.2479675271787055No Hit
CTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAAC207280.22222624857798465No Hit
CACACTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAAT206650.22155082144268878No Hit
CATGGAGCGACGCACCCTGCTGGTTGTCCTGCTGGTGTGCAGCCTGGTGC174410.18698610582056302No Hit
CGCTTGGCATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGC168750.18091798266853973No Hit
CAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGC165680.17762661551717723No Hit
ATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGC143580.1539330604536233No Hit
GAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACATGAAGG134870.14459501228151675No Hit
GCTACACACTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAA133870.14352290571755502No Hit
CTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACATGAAGGTGT111280.11930401843765984No Hit
GTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACAT107450.11519785029768648No Hit
CGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACATGAAG107270.11500487111617336No Hit
GCATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCG104020.11152052478329778No Hit
CATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACGCCG103410.11086653977928113No Hit
ACACACTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAA100270.10750012516844135No Hit
CAAGGACCTGCCATGCTACACGGACAGAATTCTGAGCAATGCCGAGAATG97050.1040479420324846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)