FastQCFastQC Report
Tue 14 Apr 2020
380822_S3_L002_R1_001.fastp-trim.202004144633.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380822_S3_L002_R1_001.fastp-trim.202004144633.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9327431
Sequences flagged as poor quality0
Sequence length15-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG141860.15208903716360914No Hit
CACCAGTACTTGCAGTCTCGCGGTTGCGGCCATAAGCTTGCCTCTGTCAC126570.1356965278006345No Hit
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG122740.1315903596606611No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA122410.13123656449455376No Hit
CTCGCGGTTGCGGCCATAAGCTTGCCTCTGTCACTGCCACCATTGCAACC111920.11999016663859534No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAGGCCTGTTC105370.1129678686446461No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG103440.11089870297619998No Hit
GTTCCGATCCAGCAGTTCTTTGTGTTGTCTAATAATATTCAGCAGTCTTG101710.10904395862054621No Hit
GCCTCTGTCACTGCCACCATTGCAACCACAGCCATGATGACTGCTGCACT98430.10552744909075179No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAGGCTTGGTA95160.10202166062659697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)