FastQCFastQC Report
Tue 14 Apr 2020
380822_S3_L001_R2_001.fastp-trim.202004144409.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380822_S3_L001_R2_001.fastp-trim.202004144409.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9369940
Sequences flagged as poor quality0
Sequence length15-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTC439930.4695120779855581No Hit
CGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGG276040.29460167300964574No Hit
CTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCT229570.24500690506022452No Hit
CTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAAC209230.2232991886821047No Hit
CACACTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAAT207800.22177303163093895No Hit
CATGGAGCGACGCACCCTGCTGGTTGTCCTGCTGGTGTGCAGCCTGGTGC178750.19076963139571865No Hit
CGCTTGGCATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGC168220.17953156583713448No Hit
CAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGC166440.17763187384337573No Hit
ATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGC143700.15336277500176096No Hit
GCTACACACTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAA133090.14203933002772698No Hit
GAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACATGAAGG132090.14097208733460406No Hit
CTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACATGAAGGTGT111890.11941378493352144No Hit
GTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACAT108820.11613734986563415No Hit
CGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAATGAACATGAAG108100.11536893512658565No Hit
CATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACGCCG104820.11186837909314255No Hit
GCATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCG104260.11127072318499372No Hit
ACACACTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAAAAA103720.11069441213070734No Hit
CAAGGACCTGCCATGCTACACGGACAGAATTCTGAGCAATGCCGAGAATG98920.10557164720371742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)