FastQCFastQC Report
Tue 14 Apr 2020
380822_S3_L001_R1_001.fastp-trim.202004144409.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380822_S3_L001_R1_001.fastp-trim.202004144409.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9369940
Sequences flagged as poor quality0
Sequence length15-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG140770.15023575391091085No Hit
CACCAGTACTTGCAGTCTCGCGGTTGCGGCCATAAGCTTGCCTCTGTCAC127670.13625487463100083No Hit
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG124130.13247683549734576No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA118990.12699120805469408No Hit
CTCGCGGTTGCGGCCATAAGCTTGCCTCTGTCACTGCCACCATTGCAACC112990.12058775189595665No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAGGCCTGTTC104600.11163358570065549No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG104010.11100391251171299No Hit
GTTCCGATCCAGCAGTTCTTTGTGTTGTCTAATAATATTCAGCAGTCTTG100130.10686301086239612No Hit
GCCTCTGTCACTGCCACCATTGCAACCACAGCCATGATGACTGCTGCACT98050.1046431460607005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)