FastQCFastQC Report
Tue 14 Apr 2020
380821_S2_L002_R1_001.fastp-trim.202004144145.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380821_S2_L002_R1_001.fastp-trim.202004144145.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8614036
Sequences flagged as poor quality0
Sequence length15-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG132850.15422503458309206No Hit
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG129750.15062625696015203No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA115010.13351464981107578No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG99930.11600833801948356No Hit
CTGGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAG92710.10762666884605544No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAGGCCTGTTC88840.10313400129741737No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAGGCTTGGTA86390.10028980607928735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)