FastQCFastQC Report
Tue 14 Apr 2020
380821_S2_L001_R1_001.fastp-trim.202004143925.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380821_S2_L001_R1_001.fastp-trim.202004143925.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8628066
Sequences flagged as poor quality0
Sequence length15-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG133530.15476237664385045No Hit
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG127550.14783150708397455No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA116420.13493174484293466No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG99180.11495044196463032No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAGGCCTGTTC91110.10559724508366071No Hit
CTGGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAG90710.10513364176861884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)