FastQCFastQC Report
Tue 14 Apr 2020
380820_S1_L001_R1_001.fastp-trim.202004143431.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename380820_S1_L001_R1_001.fastp-trim.202004143431.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9150933
Sequences flagged as poor quality0
Sequence length15-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAG130980.1431329461159862No Hit
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG102590.11210878715864274No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAGGCTTGGTA102490.1119995086839779No Hit
CACCGGTGAATCCAGGCAGGGTCTGGACTCCATGAAATCCAGGCCTGTTC102130.11160610617518454No Hit
CTGGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAG101490.11090672393732966No Hit
CACCAGTACTTGCAGTCTCGCGGTTGCGGCCATAAGCTTGCCTCTGTCAC99050.10824032915550798No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA95200.10403310788091225No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG93550.10223001304894266No Hit
CTCGCGGTTGCGGCCATAAGCTTGCCTCTGTCACTGCCACCATTGCAACC93500.10217537381161025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)