diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000393s] #Target sequences to report alignments for: 1 Opening the input file... [0.040996s] Opening the output file... [0.000283s] Loading query sequences... [0.47551s] Masking queries... [0.31025s] Building query seed set... [0.061574s] Algorithm: Double-indexed Building query histograms... [0.085325s] Allocating buffers... [0.00066s] Loading reference sequences... [5.12755s] Masking reference... [0.82376s] Initializing temporary storage... [0.003323s] Building reference histograms... [0.271175s] Allocating buffers... [0.000188s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.177193s] Building query seed array... [0.066257s] Computing hash join... [0.064665s] Building seed filter... [0.001713s] Searching alignments... [0.071783s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.149428s] Building query seed array... [0.04712s] Computing hash join... [0.032958s] Building seed filter... [0.001482s] Searching alignments... [0.058549s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.149611s] Building query seed array... [0.045568s] Computing hash join... [0.030807s] Building seed filter... [0.001566s] Searching alignments... [0.057807s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.116563s] Building query seed array... [0.035647s] Computing hash join... [0.029932s] Building seed filter... [0.001509s] Searching alignments... [0.055186s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.117743s] Building query seed array... [0.03876s] Computing hash join... [0.029783s] Building seed filter... [0.001511s] Searching alignments... [0.049148s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.212484s] Building query seed array... [0.073698s] Computing hash join... [0.037235s] Building seed filter... [0.001625s] Searching alignments... [0.052194s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.202187s] Building query seed array... [0.074367s] Computing hash join... [0.040565s] Building seed filter... [0.001661s] Searching alignments... [0.053423s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.160019s] Building query seed array... [0.057111s] Computing hash join... [0.037028s] Building seed filter... [0.001645s] Searching alignments... [0.050125s] Deallocating buffers... [0.001372s] Computing alignments... [1.27658s] Deallocating reference... [0.001688s] Loading reference sequences... [5.6e-05s] Deallocating buffers... [0.00052s] Deallocating queries... [0.000769s] Loading query sequences... [3.3e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.000614s] Closing the database file... [6.2e-05s] Deallocating taxonomy... [1.6e-05s] Total time = 10.9755s Reported 22535 pairwise alignments, 23065 HSPs. 22535 queries aligned.