WARNING	An augustus species is mentioned in the config file, dataset default species (fly) will be ignored
INFO	****************** Start a BUSCO 3.0.2 analysis, current time: 04/08/2020 20:18:54 ******************
INFO	Configuration loaded from /gscratch/scrubbed/samwhite/outputs/20200407_cbai_busco_megan/config.ini
INFO	Init tools...
INFO	Check dependencies...
INFO	Check input file...
INFO	To reproduce this run: python /gscratch/srlab/programs/busco-v3/scripts/run_BUSCO.py -i /gscratch/srlab/sam/data/C_bairdi/transcriptomes/20200408.C_bairdi.megan.Trinity.fasta -o 20200408.cbai.megan -l /gscratch/srlab/sam/data/databases/BUSCO/metazoa_odb9/ -m transcriptome -c 28 --long -z
INFO	Mode is: transcriptome
INFO	The lineage dataset is: metazoa_odb9 (eukaryota)
INFO	Temp directory is ./tmp/
INFO	****** Step 1/2, current time: 04/08/2020 20:18:55 ******
INFO	Create blast database...
INFO	[makeblastdb]	Building a new DB, current time: 04/08/2020 20:18:55
INFO	[makeblastdb]	New DB name:   /gscratch/scrubbed/samwhite/outputs/20200407_cbai_busco_megan/tmp/20200408.cbai.megan_31339617
INFO	[makeblastdb]	New DB title:  /gscratch/srlab/sam/data/C_bairdi/transcriptomes/20200408.C_bairdi.megan.Trinity.fasta
INFO	[makeblastdb]	Sequence type: Nucleotide
INFO	[makeblastdb]	Keep MBits: T
INFO	[makeblastdb]	Maximum file size: 1000000000B
INFO	[makeblastdb]	Adding sequences from FASTA; added 40435 sequences in 1.76383 seconds.
INFO	[makeblastdb]	1 of 1 task(s) completed at 04/08/2020 20:18:57
INFO	Running tblastn, writing output to /gscratch/scrubbed/samwhite/outputs/20200407_cbai_busco_megan/run_20200408.cbai.megan/blast_output/tblastn_20200408.cbai.megan.tsv...
INFO	[tblastn]	1 of 1 task(s) completed at 04/08/2020 20:20:05
INFO	****** Step 2/2, current time: 04/08/2020 20:20:05 ******
INFO	Maximum number of candidate transcript per BUSCO limited to: 3
INFO	Getting coordinates for candidate transcripts...
INFO	Extracting candidate transcripts...
INFO	Translating candidate transcripts...
INFO	Running HMMER to confirm transcript orthology:
INFO	[hmmsearch]	1362 of 1702 task(s) completed at 04/08/2020 20:20:17
INFO	[hmmsearch]	1702 of 1702 task(s) completed at 04/08/2020 20:20:18
INFO	Results:
INFO	C:91.0%[S:68.0%,D:23.0%],F:7.1%,M:1.9%,n:978
INFO	890 Complete BUSCOs (C)
INFO	665 Complete and single-copy BUSCOs (S)
INFO	225 Complete and duplicated BUSCOs (D)
INFO	69 Fragmented BUSCOs (F)
INFO	19 Missing BUSCOs (M)
INFO	978 Total BUSCO groups searched
INFO	BUSCO analysis done with WARNING(s). Total running time: 87.29616737365723 seconds
INFO	Results written in /gscratch/scrubbed/samwhite/outputs/20200407_cbai_busco_megan/run_20200408.cbai.megan/