Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 113_R1_001.blastx.daa, 113_R2_001.blastx.daa Output file: 113.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 113_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 113_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4865.1s) Total reads: 8,082,522 Alignments: 233,322,922 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 3,784,813 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 8,082,522 With hits: 8,082,522 Alignments: 233,322,922 Assig. Taxonomy: 8,057,802 Assig. EGGNOG: 1,950,932 Assig. INTERPRO2GO: 4,500,172 Tax. ass. by mate: 7,704 MinSupport set to: 4041 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,915 Binning reads: Writing classification tables Numb. Tax. classes: 205 Numb. EGG. classes: 2,682 Numb. INT. classes: 6,495 Binning reads: Syncing Class. Taxonomy: 205 Class. EGGNOG: 2,682 Class. INTERPRO2GO: 6,495 100% (27087.9s) Total time: 31963s Peak memory: 14.1 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 118_R1_001.blastx.daa, 118_R2_001.blastx.daa Output file: 118.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 118_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 118_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1576.5s) Total reads: 5,282,641 Alignments: 81,485,501 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 2,441,626 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,282,641 With hits: 5,282,641 Alignments: 81,485,501 Assig. Taxonomy: 5,263,245 Assig. EGGNOG: 629,152 Assig. INTERPRO2GO: 3,007,435 Tax. ass. by mate: 7,158 MinSupport set to: 2641 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,148 Binning reads: Writing classification tables Numb. Tax. classes: 210 Numb. EGG. classes: 2,837 Numb. INT. classes: 6,191 Binning reads: Syncing Class. Taxonomy: 210 Class. EGGNOG: 2,837 Class. INTERPRO2GO: 6,191 100% (11705.9s) Total time: 13293s Peak memory: 20.3 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 127_R1_001.blastx.daa, 127_R2_001.blastx.daa Output file: 127.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 127_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 127_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3625.7s) Total reads: 7,623,659 Alignments: 156,723,117 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 3,444,363 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 7,623,659 With hits: 7,623,659 Alignments: 156,723,117 Assig. Taxonomy: 7,599,693 Assig. EGGNOG: 1,234,422 Assig. INTERPRO2GO: 4,052,565 Tax. ass. by mate: 7,676 MinSupport set to: 3811 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,331 Binning reads: Writing classification tables Numb. Tax. classes: 242 Numb. EGG. classes: 2,722 Numb. INT. classes: 6,420 Binning reads: Syncing Class. Taxonomy: 242 Class. EGGNOG: 2,722 Class. INTERPRO2GO: 6,420 100% (19342.7s) Total time: 22979s Peak memory: 20.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 132_R1_001.blastx.daa, 132_R2_001.blastx.daa Output file: 132.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 132_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 132_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4016.6s) Total reads: 6,588,786 Alignments: 137,765,654 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 3,029,146 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 6,588,786 With hits: 6,588,786 Alignments: 137,765,654 Assig. Taxonomy: 6,574,353 Assig. EGGNOG: 1,126,398 Assig. INTERPRO2GO: 3,629,131 Tax. ass. by mate: 5,319 MinSupport set to: 3294 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,815 Binning reads: Writing classification tables Numb. Tax. classes: 216 Numb. EGG. classes: 2,944 Numb. INT. classes: 6,776 Binning reads: Syncing Class. Taxonomy: 216 Class. EGGNOG: 2,944 Class. INTERPRO2GO: 6,776 100% (17592.7s) Total time: 21620s Peak memory: 19.5 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 151_R1_001.blastx.daa, 151_R2_001.blastx.daa Output file: 151.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 151_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 151_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12722.7s) Total reads: 14,099,417 Alignments: 399,307,482 100% (0.0s) 100% (0.3s) 100% (0.2s) Linking paired reads Number of pairs: 6,521,492 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 14,099,417 With hits: 14,099,417 Alignments: 399,307,482 Assig. Taxonomy: 14,070,026 Assig. EGGNOG: 3,568,581 Assig. INTERPRO2GO: 8,098,018 Tax. ass. by mate: 7,850 MinSupport set to: 7049 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,263 Binning reads: Writing classification tables Numb. Tax. classes: 176 Numb. EGG. classes: 2,817 Numb. INT. classes: 6,720 Binning reads: Syncing Class. Taxonomy: 176 Class. EGGNOG: 2,817 Class. INTERPRO2GO: 6,720 100% (46376.0s) Total time: 59109s Peak memory: 20.4 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 173_R1_001.blastx.daa, 173_R2_001.blastx.daa Output file: 173.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 173_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 173_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3251.8s) Total reads: 7,305,626 Alignments: 95,280,002 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 3,316,030 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 7,305,626 With hits: 7,305,626 Alignments: 95,280,002 Assig. Taxonomy: 7,290,675 Assig. EGGNOG: 856,065 Assig. INTERPRO2GO: 3,348,258 Tax. ass. by mate: 2,876 MinSupport set to: 3652 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,944 Binning reads: Writing classification tables Numb. Tax. classes: 220 Numb. EGG. classes: 3,276 Numb. INT. classes: 6,682 Binning reads: Syncing Class. Taxonomy: 220 Class. EGGNOG: 3,276 Class. INTERPRO2GO: 6,682 100% (14394.7s) Total time: 17657s Peak memory: 21.7 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 178_R1_001.blastx.daa, 178_R2_001.blastx.daa Output file: 178.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 178_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 178_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8820.0s) Total reads: 10,029,936 Alignments: 265,097,354 100% (0.0s) 100% (0.4s) 100% (0.1s) Linking paired reads Number of pairs: 4,589,830 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 10,029,936 With hits: 10,029,936 Alignments: 265,097,354 Assig. Taxonomy: 10,010,111 Assig. EGGNOG: 2,311,679 Assig. INTERPRO2GO: 6,200,933 Tax. ass. by mate: 5,704 MinSupport set to: 5014 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,468 Binning reads: Writing classification tables Numb. Tax. classes: 181 Numb. EGG. classes: 3,245 Numb. INT. classes: 6,875 Binning reads: Syncing Class. Taxonomy: 181 Class. EGGNOG: 3,245 Class. INTERPRO2GO: 6,875 100% (30639.1s) Total time: 39470s Peak memory: 21.7 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 221_R1_001.blastx.daa, 221_R2_001.blastx.daa Output file: 221.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 221_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 221_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6865.5s) Total reads: 7,859,709 Alignments: 168,778,341 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 3,537,745 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 7,859,709 With hits: 7,859,709 Alignments: 168,778,341 Assig. Taxonomy: 7,840,561 Assig. EGGNOG: 1,394,677 Assig. INTERPRO2GO: 4,661,011 Tax. ass. by mate: 6,964 MinSupport set to: 3929 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,095 Binning reads: Writing classification tables Numb. Tax. classes: 182 Numb. EGG. classes: 3,083 Numb. INT. classes: 6,370 Binning reads: Syncing Class. Taxonomy: 182 Class. EGGNOG: 3,083 Class. INTERPRO2GO: 6,370 100% (20858.3s) Total time: 27735s Peak memory: 21.9 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 222_R1_001.blastx.daa, 222_R2_001.blastx.daa Output file: 222.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 222_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 222_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4155.9s) Total reads: 4,812,513 Alignments: 136,469,044 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 2,192,054 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 4,812,513 With hits: 4,812,513 Alignments: 136,469,044 Assig. Taxonomy: 4,797,470 Assig. EGGNOG: 1,186,091 Assig. INTERPRO2GO: 2,750,227 Tax. ass. by mate: 5,188 MinSupport set to: 2406 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,692 Binning reads: Writing classification tables Numb. Tax. classes: 211 Numb. EGG. classes: 2,677 Numb. INT. classes: 6,080 Binning reads: Syncing Class. Taxonomy: 211 Class. EGGNOG: 2,677 Class. INTERPRO2GO: 6,080 100% (15625.2s) Total time: 19792s Peak memory: 19.1 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 254_R1_001.blastx.daa, 254_R2_001.blastx.daa Output file: 254.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 254_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 254_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4638.9s) Total reads: 5,984,503 Alignments: 151,003,330 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 2,648,766 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,984,503 With hits: 5,984,503 Alignments: 151,003,330 Assig. Taxonomy: 5,972,121 Assig. EGGNOG: 1,383,219 Assig. INTERPRO2GO: 3,501,795 Tax. ass. by mate: 3,794 MinSupport set to: 2992 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,531 Binning reads: Writing classification tables Numb. Tax. classes: 170 Numb. EGG. classes: 2,498 Numb. INT. classes: 5,831 Binning reads: Syncing Class. Taxonomy: 170 Class. EGGNOG: 2,498 Class. INTERPRO2GO: 5,831 100% (17790.5s) Total time: 22440s Peak memory: 19.1 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 272_R1_001.blastx.daa, 272_R2_001.blastx.daa Output file: 272.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 272_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 272_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1246.3s) Total reads: 1,834,722 Alignments: 38,129,939 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 859,730 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 1,834,722 With hits: 1,834,722 Alignments: 38,129,939 Assig. Taxonomy: 1,823,499 Assig. EGGNOG: 353,427 Assig. INTERPRO2GO: 991,840 Tax. ass. by mate: 1,878 MinSupport set to: 917 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 3,232 Binning reads: Writing classification tables Numb. Tax. classes: 301 Numb. EGG. classes: 3,955 Numb. INT. classes: 6,698 Binning reads: Syncing Class. Taxonomy: 301 Class. EGGNOG: 3,955 Class. INTERPRO2GO: 6,698 100% (4910.9s) Total time: 6168s Peak memory: 18.7 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 280_R1_001.blastx.daa, 280_R2_001.blastx.daa Output file: 280.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 280_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 280_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2009.6s) Total reads: 3,067,930 Alignments: 70,831,112 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 1,292,538 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 3,067,930 With hits: 3,067,930 Alignments: 70,831,112 Assig. Taxonomy: 3,047,227 Assig. EGGNOG: 601,892 Assig. INTERPRO2GO: 1,538,906 Tax. ass. by mate: 11,836 MinSupport set to: 1533 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,971 Binning reads: Writing classification tables Numb. Tax. classes: 265 Numb. EGG. classes: 2,795 Numb. INT. classes: 6,077 Binning reads: Syncing Class. Taxonomy: 265 Class. EGGNOG: 2,795 Class. INTERPRO2GO: 6,077 100% (8027.2s) Total time: 10048s Peak memory: 20.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 294_R1_001.blastx.daa, 294_R2_001.blastx.daa Output file: 294.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 294_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 294_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6399.8s) Total reads: 9,424,998 Alignments: 211,666,805 100% (0.0s) 100% (0.1s) 100% (0.1s) Linking paired reads Number of pairs: 4,249,586 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 9,424,998 With hits: 9,424,998 Alignments: 211,666,805 Assig. Taxonomy: 9,404,231 Assig. EGGNOG: 1,834,514 Assig. INTERPRO2GO: 5,215,487 Tax. ass. by mate: 6,867 MinSupport set to: 4712 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,963 Binning reads: Writing classification tables Numb. Tax. classes: 182 Numb. EGG. classes: 2,694 Numb. INT. classes: 6,290 Binning reads: Syncing Class. Taxonomy: 182 Class. EGGNOG: 2,694 Class. INTERPRO2GO: 6,290 100% (26011.2s) Total time: 32422s Peak memory: 21.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 334_R1_001.blastx.daa, 334_R2_001.blastx.daa Output file: 334.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 334_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 334_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1541.6s) Total reads: 3,980,352 Alignments: 55,669,714 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 1,778,792 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 3,980,352 With hits: 3,980,352 Alignments: 55,669,714 Assig. Taxonomy: 3,973,524 Assig. EGGNOG: 489,001 Assig. INTERPRO2GO: 2,150,632 Tax. ass. by mate: 2,178 MinSupport set to: 1990 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,421 Binning reads: Writing classification tables Numb. Tax. classes: 206 Numb. EGG. classes: 2,719 Numb. INT. classes: 6,060 Binning reads: Syncing Class. Taxonomy: 206 Class. EGGNOG: 2,719 Class. INTERPRO2GO: 6,060 100% (8304.0s) Total time: 9856s Peak memory: 18.1 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 349_R1_001.blastx.daa, 349_R2_001.blastx.daa Output file: 349.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 349_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 349_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (332.8s) Total reads: 932,242 Alignments: 11,296,563 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 426,481 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 932,242 With hits: 932,242 Alignments: 11,296,563 Assig. Taxonomy: 915,410 Assig. EGGNOG: 74,126 Assig. INTERPRO2GO: 264,845 Tax. ass. by mate: 3,105 MinSupport set to: 466 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,067 Binning reads: Writing classification tables Numb. Tax. classes: 299 Numb. EGG. classes: 3,820 Numb. INT. classes: 6,642 Binning reads: Syncing Class. Taxonomy: 299 Class. EGGNOG: 3,820 Class. INTERPRO2GO: 6,642 100% (1770.8s) Total time: 2113s Peak memory: 18.3 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 359_R1_001.blastx.daa, 359_R2_001.blastx.daa Output file: 359.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 359_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 359_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5409.4s) Total reads: 11,121,611 Alignments: 237,747,678 100% (0.0s) 100% (0.1s) 100% (0.1s) Linking paired reads Number of pairs: 5,032,030 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 11,121,611 With hits: 11,121,611 Alignments: 237,747,678 Assig. Taxonomy: 11,096,497 Assig. EGGNOG: 2,172,805 Assig. INTERPRO2GO: 6,453,019 Tax. ass. by mate: 7,652 MinSupport set to: 5560 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,785 Binning reads: Writing classification tables Numb. Tax. classes: 223 Numb. EGG. classes: 3,201 Numb. INT. classes: 7,158 Binning reads: Syncing Class. Taxonomy: 223 Class. EGGNOG: 3,201 Class. INTERPRO2GO: 7,158 100% (28065.0s) Total time: 33485s Peak memory: 17.0 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 425_R1_001.blastx.daa, 425_R2_001.blastx.daa Output file: 425.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 425_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 425_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1381.9s) Total reads: 452,920 Alignments: 8,625,025 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 195,991 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 452,920 With hits: 452,920 Alignments: 8,625,025 Assig. Taxonomy: 448,726 Assig. EGGNOG: 69,428 Assig. INTERPRO2GO: 208,450 Tax. ass. by mate: 704 MinSupport set to: 226 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 994 Binning reads: Writing classification tables Numb. Tax. classes: 242 Numb. EGG. classes: 2,629 Numb. INT. classes: 5,078 Binning reads: Syncing Class. Taxonomy: 242 Class. EGGNOG: 2,629 Class. INTERPRO2GO: 5,078 100% (1133.1s) Total time: 2525s Peak memory: 18.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 427_R1_001.blastx.daa, 427_R2_001.blastx.daa Output file: 427.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 427_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 427_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (515.9s) Total reads: 2,058,027 Alignments: 33,701,275 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 987,634 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 2,058,027 With hits: 2,058,027 Alignments: 33,701,275 Assig. Taxonomy: 2,038,263 Assig. EGGNOG: 429,054 Assig. INTERPRO2GO: 840,739 Tax. ass. by mate: 2,513 MinSupport set to: 1029 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,977 Binning reads: Writing classification tables Numb. Tax. classes: 318 Numb. EGG. classes: 4,123 Numb. INT. classes: 6,760 Binning reads: Syncing Class. Taxonomy: 318 Class. EGGNOG: 4,123 Class. INTERPRO2GO: 6,760 100% (4727.4s) Total time: 5253s Peak memory: 16.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 445_R1_001.blastx.daa, 445_R2_001.blastx.daa Output file: 445.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 445_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 445_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (6591.7s) Total reads: 8,259,690 Alignments: 193,451,393 100% (0.0s) 100% (0.1s) 100% (0.1s) Linking paired reads Number of pairs: 3,809,037 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 8,259,690 With hits: 8,259,690 Alignments: 193,451,393 Assig. Taxonomy: 8,236,461 Assig. EGGNOG: 1,524,510 Assig. INTERPRO2GO: 4,432,247 Tax. ass. by mate: 7,619 MinSupport set to: 4129 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,010 Binning reads: Writing classification tables Numb. Tax. classes: 207 Numb. EGG. classes: 2,962 Numb. INT. classes: 6,652 Binning reads: Syncing Class. Taxonomy: 207 Class. EGGNOG: 2,962 Class. INTERPRO2GO: 6,652 100% (23199.1s) Total time: 29801s Peak memory: 22.6 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 463_R1_001.blastx.daa, 463_R2_001.blastx.daa Output file: 463.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 463_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 463_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2058.6s) Total reads: 5,192,500 Alignments: 101,459,256 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 2,525,895 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 5,192,500 With hits: 5,192,500 Alignments: 101,459,256 Assig. Taxonomy: 5,156,922 Assig. EGGNOG: 1,400,479 Assig. INTERPRO2GO: 2,440,413 Tax. ass. by mate: 4,416 MinSupport set to: 2596 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 4,357 Binning reads: Writing classification tables Numb. Tax. classes: 334 Numb. EGG. classes: 4,957 Numb. INT. classes: 7,951 Binning reads: Syncing Class. Taxonomy: 334 Class. EGGNOG: 4,957 Class. INTERPRO2GO: 7,951 100% (12802.0s) Total time: 14872s Peak memory: 20.1 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 481_R1_001.blastx.daa, 481_R2_001.blastx.daa Output file: 481.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 481_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 481_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1949.6s) Total reads: 4,379,942 Alignments: 90,773,885 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 1,989,810 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 4,379,942 With hits: 4,379,942 Alignments: 90,773,885 Assig. Taxonomy: 4,358,048 Assig. EGGNOG: 714,784 Assig. INTERPRO2GO: 2,248,621 Tax. ass. by mate: 6,376 MinSupport set to: 2189 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,004 Binning reads: Writing classification tables Numb. Tax. classes: 237 Numb. EGG. classes: 3,043 Numb. INT. classes: 6,523 Binning reads: Syncing Class. Taxonomy: 237 Class. EGGNOG: 3,043 Class. INTERPRO2GO: 6,523 100% (11443.8s) Total time: 13404s Peak memory: 20.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 485_R1_001.blastx.daa, 485_R2_001.blastx.daa Output file: 485.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 485_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 485_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2479.0s) Total reads: 6,277,013 Alignments: 128,329,255 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 2,845,697 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 6,277,013 With hits: 6,277,013 Alignments: 128,329,255 Assig. Taxonomy: 6,260,246 Assig. EGGNOG: 1,096,446 Assig. INTERPRO2GO: 3,444,592 Tax. ass. by mate: 5,452 MinSupport set to: 3138 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,831 Binning reads: Writing classification tables Numb. Tax. classes: 217 Numb. EGG. classes: 3,107 Numb. INT. classes: 7,079 Binning reads: Syncing Class. Taxonomy: 217 Class. EGGNOG: 3,107 Class. INTERPRO2GO: 7,079 100% (17697.8s) Total time: 20188s Peak memory: 19.5 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 72_R1_001.blastx.daa, 72_R2_001.blastx.daa Output file: 72.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 72_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 72_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4965.4s) Total reads: 4,787,204 Alignments: 82,789,496 100% (0.0s) 100% (0.0s) 100% (0.1s) Linking paired reads Number of pairs: 2,241,436 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 4,787,204 With hits: 4,787,204 Alignments: 82,789,496 Assig. Taxonomy: 4,777,064 Assig. EGGNOG: 664,043 Assig. INTERPRO2GO: 2,681,457 Tax. ass. by mate: 2,615 MinSupport set to: 2393 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,313 Binning reads: Writing classification tables Numb. Tax. classes: 195 Numb. EGG. classes: 3,506 Numb. INT. classes: 6,571 Binning reads: Syncing Class. Taxonomy: 195 Class. EGGNOG: 3,506 Class. INTERPRO2GO: 6,571 100% (10958.7s) Total time: 15935s Peak memory: 19.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 73_R1_001.blastx.daa, 73_R2_001.blastx.daa Output file: 73.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 73_R1_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 73_R2_001.blastx.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1167.5s) Total reads: 3,969,797 Alignments: 77,821,691 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 1,923,000 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 3,969,797 With hits: 3,969,797 Alignments: 77,821,691 Assig. Taxonomy: 3,950,387 Assig. EGGNOG: 1,002,757 Assig. INTERPRO2GO: 1,925,888 Tax. ass. by mate: 2,218 MinSupport set to: 1984 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 2,967 Binning reads: Writing classification tables Numb. Tax. classes: 273 Numb. EGG. classes: 4,718 Numb. INT. classes: 7,749 Binning reads: Syncing Class. Taxonomy: 273 Class. EGGNOG: 4,718 Class. INTERPRO2GO: 7,749 100% (9959.4s) Total time: 11137s Peak memory: 19.8 of 52.4G --------------------- Total runtime was: 483400 seconds