FastQCFastQC Report
Fri 20 Mar 2020
481_R1_001.fastp-trim.202003180047.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename481_R1_001.fastp-trim.202003180047.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48708674
Sequences flagged as poor quality0
Sequence length15-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA38296487.862353222754534No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT32572066.687116959907387No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT1083370.22241829042605432No Hit
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA1068270.21931822656473873No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG985940.20241569294208256No Hit
GTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT765170.15709111687170954No Hit
CACACACACACACACACACACACACACACACACACACACACACCT727270.14931016188204999No Hit
CACACACACACACACACACACACACACACACACACACACACACACCT726720.14919724564869083No Hit
CACACACACACACACACACACACACACACACACACACACACCT718320.14747270681193253No Hit
CACACACACACACACACACACACACACACACACACACACACACACACCT715090.14680958056875046No Hit
CACACACACACACACACACACACACACACACACACACACCT699640.14363766092256997No Hit
CACACACACACACACACACACACACACACACACACACCT656660.1348137705411566No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT651960.1338488500015418No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT647620.1329578382692167No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT644870.1323932571024208No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT641180.131635691827702No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT631580.12966479029997818No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT602900.12377672198590338No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACACCTGT591590.12145475362355378No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACACACCTGT567350.11647822726605121No Hit
CACACACACACACACACACACACACACACACACACCT553550.11364505631994827No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACCTGT542610.11139904978731303No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGT537610.11037253857495688No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACACACACCTGT523000.10737307281245226No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT515790.10589284364423471No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGT498330.10230826649068707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)