FastQCFastQC Report
Fri 20 Mar 2020
349_R1_001.fastp-trim.202003181609.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename349_R1_001.fastp-trim.202003181609.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32184056
Sequences flagged as poor quality0
Sequence length15-150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA3042840.9454495107763919No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT2985980.9277823777090123No Hit
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA588650.182901123463121No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT579860.18016995744725275No Hit
GCCAAGGACGGATCTGCCAAGGACGGATCTGCCAAGGACGGATCTGCCAA359720.11176962903619107No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGT328250.10199149541623964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)