FastQCFastQC Report
Fri 20 Mar 2020
178_R2_001.fastp-trim.202003181815.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename178_R2_001.fastp-trim.202003181815.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29009909
Sequences flagged as poor quality0
Sequence length15-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTAGACAACACAAAGAACTGCTGGATCGGAACTCTTGCATTCTGGAT543530.1873601189166088No Hit
TTTATATACTCTACAAGTTTTTTTCTGCTTTTCATTATAGGGACAAGGCC505400.17421633414982446No Hit
GTATATAATCTTAGTACATTCTCGGCATTGCTCAGAATTCTGTCCGTGTA469140.16171715671359052No Hit
GTATATAAATGAATTGTCTACTGTGACATGGGGTTACAGATAGATTTCTT426770.1471118023844887No Hit
GTCTAATAATATTCAGCAGTCTTGCATACGTGGTGCTTCAGGCAGACGTC405660.13983497845512027No Hit
TCTTAGTACATTCTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCA378510.13047610731905432No Hit
TCTCTAGAGAGCACGGAGTCCTGTGCTTCGTGCATGAAGGCTATGTGCTT372370.12835958913211346No Hit
GTCCAGACCCTGCCTGGATTCACCGGTGGTTCCCAGCCTTTCATTGGCGG358170.1234647099375596No Hit
GTTATACTGCTGTGGCAAAGCAGGAACAACATACCCTTCCTTCACTAGCG329590.11361290378401395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)