FastQCFastQC Report
Fri 20 Mar 2020
178_R1_001.fastp-trim.202003181815.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename178_R1_001.fastp-trim.202003181815.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29009909
Sequences flagged as poor quality0
Sequence length15-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTAGACAACACAAAGAACTGCTGGATCGGAACTCTTGCATTCTGGAT557270.1920964316020433No Hit
TTTATATACTCTACAAGTTTTTTTCTGCTTTTCATTATAGGGACAAGGCC508810.17539179457612225No Hit
GTATATAATCTTAGTACATTCTCGGCATTGCTCAGAATTCTGTCCGTGTA492540.16978336609053135No Hit
GTATATAAATGAATTGTCTACTGTGACATGGGGTTACAGATAGATTTCTT444820.153333814318411No Hit
GTCTAATAATATTCAGCAGTCTTGCATACGTGGTGCTTCAGGCAGACGTC404830.1395488693191006No Hit
TCTTAGTACATTCTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCA390650.13466088432059542No Hit
TCTCTAGAGAGCACGGAGTCCTGTGCTTCGTGCATGAAGGCTATGTGCTT384000.1323685641344135No Hit
GTCCAGACCCTGCCTGGATTCACCGGTGGTTCCCAGCCTTTCATTGGCGG343310.11834232227339976No Hit
GTTATACTGCTGTGGCAAAGCAGGAACAACATACCCTTCCTTCACTAGCG334310.11523993405149943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)