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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-03-06, 13:52 based on data in: /gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming


        General Statistics

        Showing 18/18 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        Meth1
        50.4%
        21.5%
        97.1%
        36.5%
        Meth10
        57.0%
        23.0%
        97.1%
        38.2%
        Meth11
        44.1%
        22.9%
        97.4%
        37.0%
        Meth12
        46.7%
        22.8%
        96.7%
        32.4%
        Meth13
        37.7%
        23.2%
        97.7%
        55.9%
        Meth14
        40.9%
        23.8%
        97.7%
        65.1%
        Meth15
        37.6%
        23.6%
        97.5%
        61.5%
        Meth16
        65.7%
        25.1%
        94.9%
        37.9%
        Meth17
        76.6%
        27.4%
        93.2%
        39.4%
        Meth18
        74.1%
        25.0%
        94.6%
        38.0%
        Meth2
        43.5%
        21.5%
        97.2%
        41.0%
        Meth3
        44.9%
        21.9%
        96.8%
        36.8%
        Meth4
        37.5%
        24.3%
        97.4%
        68.1%
        Meth5
        36.9%
        24.0%
        97.5%
        65.0%
        Meth6
        35.5%
        24.1%
        97.4%
        65.9%
        Meth7
        49.7%
        24.7%
        97.0%
        47.0%
        Meth8
        48.4%
        27.4%
        97.3%
        46.2%
        Meth9
        50.6%
        24.5%
        96.6%
        47.8%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)

        Filtered Reads

        Filtering statistics of sampled reads.

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        Duplication Rates

        Duplication rates of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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