[2020-03-06 13:53:09,876] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2020-03-06 13:53:09,903] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2020-03-06 13:53:09,903] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2020-03-06 13:53:09,903] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-03-06 13:53:09,903] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2020-03-06 13:53:15,186] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2020-03-06 13:53:15,186] multiqc [INFO ] This is MultiQC v1.8 [2020-03-06 13:53:15,187] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2020-03-06 13:53:15,187] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming [2020-03-06 13:53:15,187] multiqc [INFO ] Template : default [2020-03-06 13:53:15,187] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2020-03-06 13:53:15,187] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming [2020-03-06 13:53:15,188] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-03-06 13:53:15,188] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp8c0yuxut [2020-03-06 13:53:15,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12_R1_001.fastq.gz [2020-03-06 13:53:15,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth6_R1_001.fastq.gz [2020-03-06 13:53:15,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10_R1_001.fastq.gz [2020-03-06 13:53:15,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10.fastp-trim.202003063900_R2_001.fastq.gz [2020-03-06 13:53:15,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11_R2_001.fastq.gz [2020-03-06 13:53:15,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth6_R2_001.fastq.gz [2020-03-06 13:53:15,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 20200305_methcompare_fastp_trimming.sh [2020-03-06 13:53:15,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth2.fastp-trim.202003062630_R2_001.fastq.gz [2020-03-06 13:53:15,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15_R1_001.fastq.gz [2020-03-06 13:53:15,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2015259.out [2020-03-06 13:53:15,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2015259.out [2020-03-06 13:53:15,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15_R2_001.fastq.gz [2020-03-06 13:53:15,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17.fastp-trim.202003063731_R1_001.fastq.gz [2020-03-06 13:53:15,816] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth8.fastp-trim.202003060943_R1_001.fastq.gz [2020-03-06 13:53:15,817] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17.fastp-trim.202003063731_R2_001.fastq.gz [2020-03-06 13:53:15,817] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth1.fastp-trim.202003061245.report.html [2020-03-06 13:53:15,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12.fastp-trim.202003060645_R1_001.fastq.gz [2020-03-06 13:53:15,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17.fastp-trim.202003063731.report.html [2020-03-06 13:53:15,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth7_R2_001.fastq.gz [2020-03-06 13:53:15,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16.fastp-trim.202003062412.report.html [2020-03-06 13:53:15,819] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth7_R1_001.fastq.gz [2020-03-06 13:53:15,819] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth5.fastp-trim.202003064408.report.html [2020-03-06 13:53:15,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2020983.out [2020-03-06 13:53:15,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2020983.out [2020-03-06 13:53:15,912] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: program_options.log [2020-03-06 13:53:15,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: program_options.log [2020-03-06 13:53:15,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth2.fastp-trim.202003062630.report.html [2020-03-06 13:53:15,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16.fastp-trim.202003062412_R1_001.fastq.gz [2020-03-06 13:53:15,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11_R1_001.fastq.gz [2020-03-06 13:53:15,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18.fastp-trim.202003065117_R2_001.fastq.gz [2020-03-06 13:53:15,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth1_R2_001.fastq.gz [2020-03-06 13:53:15,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18.fastp-trim.202003065117.report.html [2020-03-06 13:53:15,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth1.fastp-trim.202003061245_R1_001.fastq.gz [2020-03-06 13:53:15,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth7.fastp-trim.202003065422_R1_001.fastq.gz [2020-03-06 13:53:15,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14_R2_001.fastq.gz [2020-03-06 13:53:15,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10.fastp-trim.202003063900_R1_001.fastq.gz [2020-03-06 13:53:15,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth3.fastp-trim.202003064031_R2_001.fastq.gz [2020-03-06 13:53:15,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth5_R2_001.fastq.gz [2020-03-06 13:53:15,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth2.fastp-trim.202003062630_R1_001.fastq.gz [2020-03-06 13:53:15,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth7.fastp-trim.202003065422_R2_001.fastq.gz [2020-03-06 13:53:15,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth9.fastp-trim.202003062409_R2_001.fastq.gz [2020-03-06 13:53:15,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth3.fastp-trim.202003064031_R1_001.fastq.gz [2020-03-06 13:53:15,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16.fastp-trim.202003062412_R2_001.fastq.gz [2020-03-06 13:53:15,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17_R2_001.fastq.gz [2020-03-06 13:53:15,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth3_R1_001.fastq.gz [2020-03-06 13:53:15,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15.fastp-trim.202003065503_R2_001.fastq.gz [2020-03-06 13:53:15,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12.fastp-trim.202003060645_R2_001.fastq.gz [2020-03-06 13:53:15,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11.fastp-trim.202003065734_R2_001.fastq.gz [2020-03-06 13:53:15,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth8_R1_001.fastq.gz [2020-03-06 13:53:15,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth4.fastp-trim.202003062011_R2_001.fastq.gz [2020-03-06 13:53:15,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth4_R1_001.fastq.gz [2020-03-06 13:53:15,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth13_R2_001.fastq.gz [2020-03-06 13:53:15,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_fastq_checksums.md5 [2020-03-06 13:53:15,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14.fastp-trim.202003064415.report.html [2020-03-06 13:53:15,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10.fastp-trim.202003063900.report.html [2020-03-06 13:53:15,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth2_R2_001.fastq.gz [2020-03-06 13:53:15,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11.fastp-trim.202003065734.report.html [2020-03-06 13:53:15,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14.fastp-trim.202003064415_R2_001.fastq.gz [2020-03-06 13:53:15,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14.fastp-trim.202003064415_R1_001.fastq.gz [2020-03-06 13:53:15,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth4.fastp-trim.202003062011.report.html [2020-03-06 13:53:15,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11.fastp-trim.202003065734_R1_001.fastq.gz [2020-03-06 13:53:15,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth6.fastp-trim.202003062949_R2_001.fastq.gz [2020-03-06 13:53:15,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth8_R2_001.fastq.gz [2020-03-06 13:53:15,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth1.fastp-trim.202003061245_R2_001.fastq.gz [2020-03-06 13:53:15,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth13.fastp-trim.202003062817.report.html [2020-03-06 13:53:15,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16_R1_001.fastq.gz [2020-03-06 13:53:15,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12.fastp-trim.202003060645.report.html [2020-03-06 13:53:15,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth13_R1_001.fastq.gz [2020-03-06 13:53:15,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth3.fastp-trim.202003064031.report.html [2020-03-06 13:53:15,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16_R2_001.fastq.gz [2020-03-06 13:53:15,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth9.fastp-trim.202003062409.report.html [2020-03-06 13:53:15,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18_R1_001.fastq.gz [2020-03-06 13:53:15,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth3_R2_001.fastq.gz [2020-03-06 13:53:15,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth5.fastp-trim.202003064408_R2_001.fastq.gz [2020-03-06 13:53:15,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17_R1_001.fastq.gz [2020-03-06 13:53:15,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth7.fastp-trim.202003065422.report.html [2020-03-06 13:53:15,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth9.fastp-trim.202003062409_R1_001.fastq.gz [2020-03-06 13:53:15,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth9_R2_001.fastq.gz [2020-03-06 13:53:15,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth5_R1_001.fastq.gz [2020-03-06 13:53:15,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth6.fastp-trim.202003062949_R1_001.fastq.gz [2020-03-06 13:53:15,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth9_R1_001.fastq.gz [2020-03-06 13:53:15,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth2_R1_001.fastq.gz [2020-03-06 13:53:15,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth8.fastp-trim.202003060943.report.html [2020-03-06 13:53:15,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth6.fastp-trim.202003062949.report.html [2020-03-06 13:53:15,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth5.fastp-trim.202003064408_R1_001.fastq.gz [2020-03-06 13:53:15,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15.fastp-trim.202003065503.report.html [2020-03-06 13:53:15,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10_R2_001.fastq.gz [2020-03-06 13:53:15,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18.fastp-trim.202003065117_R1_001.fastq.gz [2020-03-06 13:53:15,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth4.fastp-trim.202003062011_R1_001.fastq.gz [2020-03-06 13:53:15,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12_R2_001.fastq.gz [2020-03-06 13:53:15,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth8.fastp-trim.202003060943_R2_001.fastq.gz [2020-03-06 13:53:15,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15.fastp-trim.202003065503_R1_001.fastq.gz [2020-03-06 13:53:15,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth1_R1_001.fastq.gz [2020-03-06 13:53:15,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14_R1_001.fastq.gz [2020-03-06 13:53:15,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18_R2_001.fastq.gz [2020-03-06 13:53:15,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth4_R2_001.fastq.gz [2020-03-06 13:53:19,418] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2020-03-06 13:53:19,438] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2020-03-06 13:53:19,473] multiqc [DEBUG ] No samples found: custom_content [2020-03-06 13:53:19,506] multiqc [DEBUG ] No samples found: conpair [2020-03-06 13:53:19,547] multiqc [DEBUG ] No samples found: peddy [2020-03-06 13:53:19,588] multiqc [DEBUG ] No samples found: methylQA [2020-03-06 13:53:19,604] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-03-06 13:53:19,684] multiqc [DEBUG ] No samples found: qualimap [2020-03-06 13:53:19,712] multiqc [DEBUG ] No samples found: preseq [2020-03-06 13:53:19,741] multiqc [DEBUG ] No samples found: quast [2020-03-06 13:53:19,749] multiqc [DEBUG ] No samples found: qorts [2020-03-06 13:53:19,801] multiqc [DEBUG ] No samples found: rna_seqc [2020-03-06 13:53:19,889] multiqc [DEBUG ] No samples found: rsem [2020-03-06 13:53:19,951] multiqc [DEBUG ] No samples found: rseqc [2020-03-06 13:53:19,971] multiqc [DEBUG ] No samples found: busco [2020-03-06 13:53:20,018] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-03-06 13:53:20,052] multiqc [DEBUG ] No samples found: disambiguate [2020-03-06 13:53:20,077] multiqc [DEBUG ] No samples found: supernova [2020-03-06 13:53:20,159] multiqc [DEBUG ] No samples found: deeptools [2020-03-06 13:53:20,236] multiqc [DEBUG ] No samples found: sargasso [2020-03-06 13:53:20,247] multiqc [DEBUG ] No samples found: verifybamid [2020-03-06 13:53:20,277] multiqc [DEBUG ] No samples found: mirtrace [2020-03-06 13:53:20,300] multiqc [DEBUG ] No samples found: happy [2020-03-06 13:53:20,319] multiqc [DEBUG ] No samples found: homer [2020-03-06 13:53:20,364] multiqc [DEBUG ] No samples found: macs2 [2020-03-06 13:53:20,374] multiqc [DEBUG ] No samples found: theta2 [2020-03-06 13:53:20,384] multiqc [DEBUG ] No samples found: snpeff [2020-03-06 13:53:20,426] multiqc [DEBUG ] No samples found: gatk [2020-03-06 13:53:20,434] multiqc [DEBUG ] No samples found: htseq [2020-03-06 13:53:20,470] multiqc [DEBUG ] No samples found: bcftools [2020-03-06 13:53:20,478] multiqc [DEBUG ] No samples found: featureCounts [2020-03-06 13:53:20,487] multiqc [DEBUG ] No samples found: fgbio [2020-03-06 13:53:20,494] multiqc [DEBUG ] No samples found: dedup [2020-03-06 13:53:20,508] multiqc [DEBUG ] No samples found: damageprofiler [2020-03-06 13:53:20,600] multiqc [DEBUG ] No samples found: biobambam2 [2020-03-06 13:53:20,607] multiqc [DEBUG ] No samples found: mtnucratio [2020-03-06 13:53:20,611] multiqc [DEBUG ] No samples found: picard [2020-03-06 13:53:20,618] multiqc [DEBUG ] No samples found: prokka [2020-03-06 13:53:20,625] multiqc [DEBUG ] No samples found: samblaster [2020-03-06 13:53:20,706] multiqc [DEBUG ] No samples found: samtools [2020-03-06 13:53:20,716] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-03-06 13:53:20,746] multiqc [DEBUG ] No samples found: bamtools [2020-03-06 13:53:20,753] multiqc [DEBUG ] No samples found: jellyfish [2020-03-06 13:53:20,765] multiqc [DEBUG ] No samples found: vcftools [2020-03-06 13:53:20,773] multiqc [DEBUG ] No samples found: longranger [2020-03-06 13:53:20,803] multiqc [DEBUG ] No samples found: stacks [2020-03-06 13:53:20,878] multiqc [DEBUG ] No samples found: bbmap [2020-03-06 13:53:20,896] multiqc [DEBUG ] No samples found: bismark [2020-03-06 13:53:20,918] multiqc [DEBUG ] No samples found: biscuit [2020-03-06 13:53:20,926] multiqc [DEBUG ] No samples found: hicexplorer [2020-03-06 13:53:20,943] multiqc [DEBUG ] No samples found: hicup [2020-03-06 13:53:20,961] multiqc [DEBUG ] No samples found: hicpro [2020-03-06 13:53:20,968] multiqc [DEBUG ] No samples found: salmon [2020-03-06 13:53:20,992] multiqc [DEBUG ] No samples found: kallisto [2020-03-06 13:53:21,013] multiqc [DEBUG ] No samples found: slamdunk [2020-03-06 13:53:21,042] multiqc [DEBUG ] No samples found: star [2020-03-06 13:53:21,089] multiqc [DEBUG ] No samples found: hisat2 [2020-03-06 13:53:21,124] multiqc [DEBUG ] No samples found: tophat [2020-03-06 13:53:21,134] multiqc [DEBUG ] No samples found: bowtie2 [2020-03-06 13:53:21,158] multiqc [DEBUG ] No samples found: bowtie1 [2020-03-06 13:53:21,167] multiqc [DEBUG ] No samples found: kat [2020-03-06 13:53:21,175] multiqc [DEBUG ] No samples found: leehom [2020-03-06 13:53:21,220] multiqc [DEBUG ] No samples found: adapterRemoval [2020-03-06 13:53:21,230] multiqc [DEBUG ] No samples found: clipandmerge [2020-03-06 13:53:21,271] multiqc [DEBUG ] No samples found: cutadapt [2020-03-06 13:53:21,281] multiqc [DEBUG ] No samples found: flexbar [2020-03-06 13:53:21,309] multiqc [DEBUG ] No samples found: trimmomatic [2020-03-06 13:53:21,338] multiqc [DEBUG ] No samples found: skewer [2020-03-06 13:53:21,346] multiqc [DEBUG ] No samples found: sortmerna [2020-03-06 13:53:21,355] multiqc [DEBUG ] No samples found: biobloomtools [2020-03-06 13:53:21,382] multiqc [DEBUG ] No samples found: fastq_screen [2020-03-06 13:53:21,415] multiqc [DEBUG ] No samples found: afterqc [2020-03-06 13:53:21,900] multiqc.modules.fastp.fastp [INFO ] Found 18 reports [2020-03-06 13:53:22,002] multiqc [DEBUG ] No samples found: fastqc [2020-03-06 13:53:22,037] multiqc [DEBUG ] No samples found: minionqc [2020-03-06 13:53:22,065] multiqc [DEBUG ] No samples found: mosdepth [2020-03-06 13:53:22,092] multiqc [DEBUG ] No samples found: clusterflow [2020-03-06 13:53:22,126] multiqc [DEBUG ] No samples found: bcl2fastq [2020-03-06 13:53:22,143] multiqc [DEBUG ] No samples found: interop [2020-03-06 13:53:22,152] multiqc [DEBUG ] No samples found: flash [2020-03-06 13:53:22,160] multiqc [DEBUG ] No samples found: seqyclean [2020-03-06 13:53:22,202] multiqc [INFO ] Compressing plot data [2020-03-06 13:53:23,568] multiqc [INFO ] Report : multiqc_report.html [2020-03-06 13:53:23,568] multiqc [INFO ] Data : multiqc_data [2020-03-06 13:53:23,571] multiqc [DEBUG ] Moving data file from '/tmp/tmp8c0yuxut/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming/multiqc_data' [2020-03-06 13:53:23,572] multiqc [DEBUG ] Moving data file from '/tmp/tmp8c0yuxut/multiqc_data/multiqc_fastp.txt' to '/gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming/multiqc_data' [2020-03-06 13:53:23,573] multiqc [DEBUG ] Moving data file from '/tmp/tmp8c0yuxut/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming/multiqc_data' [2020-03-06 13:53:23,573] multiqc [DEBUG ] Moving data file from '/tmp/tmp8c0yuxut/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming/multiqc_data' [2020-03-06 13:53:23,574] multiqc [DEBUG ] Moving data file from '/tmp/tmp8c0yuxut/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming/multiqc_data' [2020-03-06 13:53:24,285] multiqc [INFO ] MultiQC complete