WARNING	An augustus species is mentioned in the config file, dataset default species (fly) will be ignored
INFO	****************** Start a BUSCO 3.0.2 analysis, current time: 02/07/2020 15:02:39 ******************
INFO	Configuration loaded from /gscratch/scrubbed/samwhite/outputs/20200207_cbai_busco_megan/config.ini
INFO	Init tools...
INFO	Check dependencies...
INFO	Check input file...
INFO	To reproduce this run: python /gscratch/srlab/programs/busco-v3/scripts/run_BUSCO.py -i /gscratch/srlab/sam/data/C_bairdi/transcriptomes/20200122.C_bairdi.megan.Trinity.fasta -o 20200207.cbai.megan -l /gscratch/srlab/sam/data/databases/BUSCO/metazoa_odb9/ -m transcriptome -c 28 --long -z
INFO	Mode is: transcriptome
INFO	The lineage dataset is: metazoa_odb9 (eukaryota)
INFO	Temp directory is ./tmp/
INFO	****** Step 1/2, current time: 02/07/2020 15:02:40 ******
INFO	Create blast database...
INFO	[makeblastdb]	Building a new DB, current time: 02/07/2020 15:02:40
INFO	[makeblastdb]	New DB name:   /gscratch/scrubbed/samwhite/outputs/20200207_cbai_busco_megan/tmp/20200207.cbai.megan_3008243817
INFO	[makeblastdb]	New DB title:  /gscratch/srlab/sam/data/C_bairdi/transcriptomes/20200122.C_bairdi.megan.Trinity.fasta
INFO	[makeblastdb]	Sequence type: Nucleotide
INFO	[makeblastdb]	Keep MBits: T
INFO	[makeblastdb]	Maximum file size: 1000000000B
INFO	[makeblastdb]	Adding sequences from FASTA; added 19670 sequences in 0.881879 seconds.
INFO	[makeblastdb]	1 of 1 task(s) completed at 02/07/2020 15:02:41
INFO	Running tblastn, writing output to /gscratch/scrubbed/samwhite/outputs/20200207_cbai_busco_megan/run_20200207.cbai.megan/blast_output/tblastn_20200207.cbai.megan.tsv...
INFO	[tblastn]	1 of 1 task(s) completed at 02/07/2020 15:03:36
INFO	****** Step 2/2, current time: 02/07/2020 15:03:36 ******
INFO	Maximum number of candidate transcript per BUSCO limited to: 3
INFO	Getting coordinates for candidate transcripts...
INFO	Extracting candidate transcripts...
INFO	Translating candidate transcripts...
INFO	Running HMMER to confirm transcript orthology:
INFO	[hmmsearch]	319 of 1592 task(s) completed at 02/07/2020 15:03:45
INFO	[hmmsearch]	478 of 1592 task(s) completed at 02/07/2020 15:03:45
INFO	[hmmsearch]	796 of 1592 task(s) completed at 02/07/2020 15:03:46
INFO	[hmmsearch]	956 of 1592 task(s) completed at 02/07/2020 15:03:46
INFO	[hmmsearch]	1115 of 1592 task(s) completed at 02/07/2020 15:03:47
INFO	[hmmsearch]	1592 of 1592 task(s) completed at 02/07/2020 15:03:48
INFO	Results:
INFO	C:85.5%[S:64.7%,D:20.8%],F:9.3%,M:5.2%,n:978
INFO	836 Complete BUSCOs (C)
INFO	633 Complete and single-copy BUSCOs (S)
INFO	203 Complete and duplicated BUSCOs (D)
INFO	91 Fragmented BUSCOs (F)
INFO	51 Missing BUSCOs (M)
INFO	978 Total BUSCO groups searched
INFO	BUSCO analysis done with WARNING(s). Total running time: 73.68021702766418 seconds
INFO	Results written in /gscratch/scrubbed/samwhite/outputs/20200207_cbai_busco_megan/run_20200207.cbai.megan/