Got 4 samples, and got: 5 data fields. Header: infected_01 infected_02 uninfected_01 uninfected_02 Next: TRINITY_DN0_c0_g1 3114.83 2579.54 3731.78 1548.10 $VAR1 = { 'uninfected_02' => 4, 'infected_02' => 2, 'infected_01' => 1, 'uninfected_01' => 3 }; Contrasts to perform are: $VAR1 = [ [ 'infected', 'uninfected' ] ]; Loading required package: edgeR Loading required package: limma