Got 2 samples, and got: 3 data fields. Header: D12_infected_01 D26_infected_01 Next: TRINITY_DN0_c0_g1 3115.44 2578.27 $VAR1 = { 'D26_infected_01' => 2, 'D12_infected_01' => 1 }; Contrasts to perform are: $VAR1 = [ [ 'D12', 'D26' ] ]; Loading required package: edgeR Loading required package: limma