Got 4 samples, and got: 5 data fields. Header: D12_01 D12_02 D26_01 D26_02 Next: TRINITY_DN0_c0_g1 3114.03 3732.92 2579.90 1547.73 $VAR1 = { 'D26_02' => 4, 'D12_01' => 1, 'D26_01' => 3, 'D12_02' => 2 }; Contrasts to perform are: $VAR1 = [ [ 'D12', 'D26' ] ]; Loading required package: edgeR Loading required package: limma