diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.236629s] #Target sequences to report alignments for: 1 Opening the input file... [0.041882s] Opening the output file... [0.000431s] Loading query sequences... [0.049618s] Masking queries... [0.039774s] Building query seed set... [0.028867s] Algorithm: Double-indexed Building query histograms... [0.015378s] Allocating buffers... [0.000196s] Loading reference sequences... [5.26403s] Masking reference... [0.706443s] Initializing temporary storage... [0.007205s] Building reference histograms... [0.140606s] Allocating buffers... [0.000159s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.112687s] Building query seed array... [0.024397s] Computing hash join... [0.039822s] Building seed filter... [0.002332s] Searching alignments... [0.026419s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.173016s] Building query seed array... [0.01518s] Computing hash join... [0.032461s] Building seed filter... [0.002094s] Searching alignments... [0.024922s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.140679s] Building query seed array... [0.017149s] Computing hash join... [0.028573s] Building seed filter... [0.003102s] Searching alignments... [0.019388s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.099805s] Building query seed array... [0.014485s] Computing hash join... [0.02412s] Building seed filter... [0.003223s] Searching alignments... [0.022783s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.114503s] Building query seed array... [0.011912s] Computing hash join... [0.022706s] Building seed filter... [0.003129s] Searching alignments... [0.013843s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.128246s] Building query seed array... [0.015034s] Computing hash join... [0.023708s] Building seed filter... [0.002517s] Searching alignments... [0.017559s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.111672s] Building query seed array... [0.009108s] Computing hash join... [0.018867s] Building seed filter... [0.002854s] Searching alignments... [0.018198s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.095808s] Building query seed array... [0.007537s] Computing hash join... [0.018243s] Building seed filter... [0.002626s] Searching alignments... [0.01362s] Deallocating buffers... [0.001458s] Computing alignments... [0.322149s] Deallocating reference... [0.003342s] Loading reference sequences... [9.3e-05s] Deallocating buffers... [0.001047s] Deallocating queries... [0.000908s] Loading query sequences... [6.1e-05s] Closing the input file... [6.3e-05s] Closing the output file... [0.000923s] Closing the database file... [0.0001s] Deallocating taxonomy... [3.2e-05s] Total time = 8.34374s Reported 3599 pairwise alignments, 3607 HSPs. 3599 queries aligned.