diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000158s] #Target sequences to report alignments for: 1 Opening the input file... [0.078671s] Opening the output file... [0.000355s] Loading query sequences... [0.294568s] Masking queries... [0.225965s] Building query seed set... [0.050527s] Algorithm: Double-indexed Building query histograms... [0.059056s] Allocating buffers... [0.000139s] Loading reference sequences... [0.573862s] Masking reference... [0.924026s] Initializing temporary storage... [0.005421s] Building reference histograms... [0.246457s] Allocating buffers... [0.000187s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.169131s] Building query seed array... [0.043343s] Computing hash join... [0.053714s] Building seed filter... [0.00207s] Searching alignments... [0.063389s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.17723s] Building query seed array... [0.049435s] Computing hash join... [0.02995s] Building seed filter... [0.002157s] Searching alignments... [0.052018s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.182175s] Building query seed array... [0.046942s] Computing hash join... [0.029887s] Building seed filter... [0.002011s] Searching alignments... [0.05082s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.163204s] Building query seed array... [0.039938s] Computing hash join... [0.033159s] Building seed filter... [0.00218s] Searching alignments... [0.051172s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.174795s] Building query seed array... [0.040933s] Computing hash join... [0.033459s] Building seed filter... [0.002138s] Searching alignments... [0.047732s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.204521s] Building query seed array... [0.049569s] Computing hash join... [0.033937s] Building seed filter... [0.002427s] Searching alignments... [0.049374s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.180726s] Building query seed array... [0.049563s] Computing hash join... [0.029933s] Building seed filter... [0.001972s] Searching alignments... [0.043843s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.156936s] Building query seed array... [0.040383s] Computing hash join... [0.030266s] Building seed filter... [0.002187s] Searching alignments... [0.044802s] Deallocating buffers... [0.001566s] Computing alignments... [1.08838s] Deallocating reference... [0.001621s] Loading reference sequences... [6.9e-05s] Deallocating buffers... [0.001128s] Deallocating queries... [0.000528s] Loading query sequences... [4.5e-05s] Closing the input file... [5.7e-05s] Closing the output file... [0.001033s] Closing the database file... [5e-05s] Deallocating taxonomy... [2.4e-05s] Total time = 6.02107s Reported 14157 pairwise alignments, 14523 HSPs. 14157 queries aligned.