Version   MEGAN Community Edition (version 6.18.3, built 17 Dec 2019)
Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
This is free software, licensed under the terms of the GNU General Public License, Version 3.
Sources available at: https://github.com/danielhuson/megan-ce
Java version: 11.0.5

Opening startup files
Loading ncbi.map: 2,175,506
Loading ncbi.tre: 2,175,510
Induced tree has 2,175,510 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200103_cbai_diamond_blastx/304428.rma6';
Info: Opened file '304428.rma6' with 27,583,729 reads
Induced tree has 232 of 2,175,510 nodes
Induced tree has 232 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200103_cbai_diamond_blastx/329774.rma6';
Executing: 'open''file''=''/media/sam/toaster/20200103_cbai_diamond_blastx/329774.rma6';
Info: Opened file '329774.rma6' with 18,943,588 reads
Induced tree has 256 of 2,175,510 nodes
Induced tree has 256 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200103_cbai_diamond_blastx/329775.rma6';
Executing: 'open''file''=''/media/sam/toaster/20200103_cbai_diamond_blastx/329775.rma6';
Info: Opened file '329775.rma6' with 18,463,994 reads
Induced tree has 233 of 2,175,510 nodes
Induced tree has 233 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200103_cbai_diamond_blastx/329776.rma6';
Executing: 'open''file''=''/media/sam/toaster/20200103_cbai_diamond_blastx/329776.rma6';
Info: Opened file '329776.rma6' with 18,561,471 reads
Induced tree has 345 of 2,175,510 nodes
Induced tree has 345 of 2,175,510 nodes
Executing: open file='/media/sam/toaster/20200103_cbai_diamond_blastx/329777.rma6';
Executing: 'open''file''=''/media/sam/toaster/20200103_cbai_diamond_blastx/329777.rma6';
Info: Opened file '329777.rma6' with 19,718,098 reads
Induced tree has 226 of 2,175,510 nodes
Induced tree has 226 of 2,175,510 nodes
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_304428-reads-%t.fasta' data=Taxonomy ids= 33630 allBelow=true;
Info: Number of reads written: 430441
Info: Command completed (22s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_304428-reads-%t.fa...
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_304428-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 13124394
Info: Command completed (2703s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_304428-reads-%t....
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329774-reads-%t.fasta' data=Taxonomy ids= 33630 allBelow=true;
Info: Number of reads written: 856891
Info: Command completed (847s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329774-reads-%t.f...
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329774-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 8635069
Info: Command completed (1658s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329774-reads-%t....
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329775-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 8932725
Info: Command completed (1607s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329775-reads-%t....
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329776-reads-%t.fasta' data=Taxonomy ids= 33630 allBelow=false;
Info: Number of reads written: 131532
Info: Command completed (81s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329776-reads-%t.fa...
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329776-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 8169062
Info: Command completed (1522s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329776-reads-%t....
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329776-reads-%t.fasta' data=Taxonomy ids= 33630 allBelow=true;
Info: Number of reads written: 770809
Info: Command completed (89s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329776-reads-%t.fa...
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329777-reads-%t.fasta' data=Taxonomy ids= 6656 allBelow=true;
Info: Number of reads written: 9016921
Info: Command completed (1792s): extract what=reads outdir='/media/sam/toaster/20200114_cbai_MEGAN_read_extractions' outfile='20200114_cbai_329777-reads-%t....