diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.126931s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.06504s] Opening the output file... [0.000423s] Loading query sequences... [81.1879s] Masking queries... [62.1274s] Building query seed set... [0.346178s] Algorithm: Double-indexed Building query histograms... [3.03169s] Allocating buffers... [0.000743s] Loading reference sequences... [46.1159s] Masking reference... [57.1716s] Initializing temporary storage... [0.018218s] Building reference histograms... [12.4891s] Allocating buffers... [0.000197s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.05594s] Building query seed array... [2.0791s] Computing hash join... [6.35285s] Building seed filter... [0.075285s] Searching alignments... [238.517s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.1838s] Building query seed array... [3.14168s] Computing hash join... [4.71928s] Building seed filter... [0.094685s] Searching alignments... [178.437s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.2991s] Building query seed array... [2.61786s] Computing hash join... [4.72605s] Building seed filter... [0.089577s] Searching alignments... [159.92s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.27802s] Building query seed array... [2.43135s] Computing hash join... [4.61443s] Building seed filter... [0.073514s] Searching alignments... [142.045s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.19967s] Building query seed array... [2.02158s] Computing hash join... [4.53199s] Building seed filter... [0.077115s] Searching alignments... [124.726s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.6116s] Building query seed array... [2.47785s] Computing hash join... [5.57138s] Building seed filter... [0.073699s] Searching alignments... [115.032s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.9443s] Building query seed array... [2.51634s] Computing hash join... [5.31541s] Building seed filter... [0.102322s] Searching alignments... [124.991s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.97654s] Building query seed array... [2.04382s] Computing hash join... [5.58955s] Building seed filter... [0.074447s] Searching alignments... [106.051s] Deallocating buffers... [1.29003s] Opening temporary output file... [0.001426s] Computing alignments... [676.092s] Deallocating reference... [0.078958s] Loading reference sequences... [39.4293s] Masking reference... [57.6659s] Initializing temporary storage... [0.005633s] Building reference histograms... [12.7798s] Allocating buffers... [0.000217s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.03339s] Building query seed array... [2.19515s] Computing hash join... [6.37712s] Building seed filter... [0.083723s] Searching alignments... [181.305s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.5732s] Building query seed array... [2.77094s] Computing hash join... [5.46409s] Building seed filter... [0.097779s] Searching alignments... [131.042s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.0959s] Building query seed array... [2.8617s] Computing hash join... [6.21158s] Building seed filter... [0.079975s] Searching alignments... [118.299s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.95239s] Building query seed array... [2.41245s] Computing hash join... [4.80415s] Building seed filter... [0.115199s] Searching alignments... [102.02s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.39079s] Building query seed array... [2.12502s] Computing hash join... [4.99591s] Building seed filter... [0.072873s] Searching alignments... [97.6908s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.0741s] Building query seed array... [2.51145s] Computing hash join... [4.76424s] Building seed filter... [0.103119s] Searching alignments... [78.604s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.4005s] Building query seed array... [2.52071s] Computing hash join... [5.27569s] Building seed filter... [0.112706s] Searching alignments... [90.2926s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.50909s] Building query seed array... [2.15086s] Computing hash join... [5.7901s] Building seed filter... [0.10196s] Searching alignments... [76.1595s] Deallocating buffers... [1.90631s] Opening temporary output file... [0.001663s] Computing alignments... [500.376s] Deallocating reference... [0.218085s] Loading reference sequences... [349.172s] Masking reference... [57.0581s] Initializing temporary storage... [0.004482s] Building reference histograms... [12.4082s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.06509s] Building query seed array... [2.3285s] Computing hash join... [6.62902s] Building seed filter... [0.110735s] Searching alignments... [218.955s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.7053s] Building query seed array... [2.84137s] Computing hash join... [4.67378s] Building seed filter... [0.090006s] Searching alignments... [156.193s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.5072s] Building query seed array... [2.82899s] Computing hash join... [4.87908s] Building seed filter... [0.081009s] Searching alignments... [142.946s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.80584s] Building query seed array... [2.37959s] Computing hash join... [4.88498s] Building seed filter... [0.075802s] Searching alignments... [121.203s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.82375s] Building query seed array... [2.44205s] Computing hash join... [4.15712s] Building seed filter... [0.104402s] Searching alignments... [111.736s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.0802s] Building query seed array... [2.48722s] Computing hash join... [4.56172s] Building seed filter... [0.122049s] Searching alignments... [96.4499s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.4668s] Building query seed array... [2.51259s] Computing hash join... [5.7417s] Building seed filter... [0.103687s] Searching alignments... [108.035s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.51904s] Building query seed array... [2.16322s] Computing hash join... [4.23796s] Building seed filter... [0.109001s] Searching alignments... [90.1085s] Deallocating buffers... [2.22647s] Opening temporary output file... [0.001537s] Computing alignments... [624.91s] Deallocating reference... [0.319471s] Loading reference sequences... [329.451s] Masking reference... [58.4912s] Initializing temporary storage... [0.004519s] Building reference histograms... [13.089s] Allocating buffers... [0.000193s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.09331s] Building query seed array... [2.29536s] Computing hash join... [6.09517s] Building seed filter... [0.097113s] Searching alignments... [148.259s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.5708s] Building query seed array... [2.64764s] Computing hash join... [5.87759s] Building seed filter... [0.081334s] Searching alignments... [105.248s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.3088s] Building query seed array... [2.86376s] Computing hash join... [5.07347s] Building seed filter... [0.085479s] Searching alignments... [94.6621s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.49559s] Building query seed array... [2.30072s] Computing hash join... [5.82396s] Building seed filter... [0.076874s] Searching alignments... [92.7852s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.3269s] Building query seed array... [2.07792s] Computing hash join... [5.15061s] Building seed filter... [0.100103s] Searching alignments... [100.977s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.5658s] Building query seed array... [2.47772s] Computing hash join... [5.50536s] Building seed filter... [0.080984s] Searching alignments... [66.475s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.9617s] Building query seed array... [2.47683s] Computing hash join... [5.21372s] Building seed filter... [0.078554s] Searching alignments... [71.3804s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.07937s] Building query seed array... [2.08088s] Computing hash join... [4.40208s] Building seed filter... [0.101608s] Searching alignments... [56.6065s] Deallocating buffers... [1.10363s] Opening temporary output file... [0.001457s] Computing alignments... [442.634s] Deallocating reference... [0.2246s] Loading reference sequences... [313.418s] Masking reference... [57.198s] Initializing temporary storage... [0.005986s] Building reference histograms... [12.9193s] Allocating buffers... [0.000184s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.28139s] Building query seed array... [2.25837s] Computing hash join... [6.95253s] Building seed filter... [0.082637s] Searching alignments... [144.632s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.8971s] Building query seed array... [2.69493s] Computing hash join... [5.38465s] Building seed filter... [0.090636s] Searching alignments... [107.138s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.1662s] Building query seed array... [2.70295s] Computing hash join... [4.47378s] Building seed filter... [0.076074s] Searching alignments... [98.5683s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.74302s] Building query seed array... [2.40865s] Computing hash join... [4.50583s] Building seed filter... [0.076323s] Searching alignments... [83.3343s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.96253s] Building query seed array... [2.03319s] Computing hash join... [4.334s] Building seed filter... [0.115922s] Searching alignments... [78.4337s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.4041s] Building query seed array... [2.36507s] Computing hash join... [5.17699s] Building seed filter... [0.099293s] Searching alignments... [72.0499s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.6749s] Building query seed array... [2.34458s] Computing hash join... [5.55657s] Building seed filter... [0.123644s] Searching alignments... [67.8677s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.58435s] Building query seed array... [1.99022s] Computing hash join... [5.4114s] Building seed filter... [0.124056s] Searching alignments... [59.8717s] Deallocating buffers... [2.35725s] Opening temporary output file... [0.001682s] Computing alignments... [417.89s] Deallocating reference... [0.281099s] Loading reference sequences... [15.0967s] Masking reference... [21.3991s] Initializing temporary storage... [0.004943s] Building reference histograms... [4.90589s] Allocating buffers... [0.000189s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.33064s] Building query seed array... [2.08137s] Computing hash join... [2.01085s] Building seed filter... [0.051059s] Searching alignments... [71.1209s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21154s] Building query seed array... [2.49053s] Computing hash join... [2.07373s] Building seed filter... [0.044893s] Searching alignments... [51.3652s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.46758s] Building query seed array... [2.48037s] Computing hash join... [2.08568s] Building seed filter... [0.048702s] Searching alignments... [46.5829s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28734s] Building query seed array... [2.02273s] Computing hash join... [2.05832s] Building seed filter... [0.06811s] Searching alignments... [40.717s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26659s] Building query seed array... [1.76637s] Computing hash join... [1.95863s] Building seed filter... [0.043764s] Searching alignments... [35.142s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.16791s] Building query seed array... [2.19638s] Computing hash join... [1.94082s] Building seed filter... [0.045896s] Searching alignments... [32.5601s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26203s] Building query seed array... [2.1594s] Computing hash join... [1.93183s] Building seed filter... [0.042872s] Searching alignments... [37.1801s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.33084s] Building query seed array... [1.83112s] Computing hash join... [1.94426s] Building seed filter... [0.054422s] Searching alignments... [32.0157s] Deallocating buffers... [0.051668s] Opening temporary output file... [0.02786s] Computing alignments... [217.018s] Deallocating reference... [0.029826s] Loading reference sequences... [0.081076s] Deallocating buffers... [0.171971s] Joining output blocks... [369.815s] Deallocating queries... [0.040673s] Loading query sequences... [3.7e-05s] Closing the input file... [4.6e-05s] Closing the output file... [0.344289s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [1e-05s] Total time = 10590.8s Reported 4664447344 pairwise alignments, 4664523023 HSPs. 6993700 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.075636s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.085345s] Opening the output file... [0.000377s] Loading query sequences... [82.1971s] Masking queries... [82.9317s] Building query seed set... [0.342875s] Algorithm: Double-indexed Building query histograms... [3.26349s] Allocating buffers... [0.000792s] Loading reference sequences... [44.2329s] Masking reference... [58.6978s] Initializing temporary storage... [0.004823s] Building reference histograms... [13.2275s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.08176s] Building query seed array... [2.05368s] Computing hash join... [6.80844s] Building seed filter... [0.108184s] Searching alignments... [249.271s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.0021s] Building query seed array... [3.12959s] Computing hash join... [4.91517s] Building seed filter... [0.107107s] Searching alignments... [188.883s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.4312s] Building query seed array... [2.85128s] Computing hash join... [4.91894s] Building seed filter... [0.084852s] Searching alignments... [167.386s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.5944s] Building query seed array... [2.34953s] Computing hash join... [5.623s] Building seed filter... [0.089429s] Searching alignments... [136.855s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.26401s] Building query seed array... [1.99403s] Computing hash join... [5.08686s] Building seed filter... [0.109862s] Searching alignments... [116.888s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.7347s] Building query seed array... [2.38834s] Computing hash join... [4.79127s] Building seed filter... [0.093518s] Searching alignments... [104.275s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.802s] Building query seed array... [2.48773s] Computing hash join... [5.43766s] Building seed filter... [0.105887s] Searching alignments... [128.871s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.15334s] Building query seed array... [2.02807s] Computing hash join... [5.60086s] Building seed filter... [0.08326s] Searching alignments... [108.357s] Deallocating buffers... [1.47859s] Opening temporary output file... [0.000681s] Computing alignments... [682.043s] Deallocating reference... [0.47291s] Loading reference sequences... [45.7221s] Masking reference... [57.8549s] Initializing temporary storage... [0.005595s] Building reference histograms... [12.2236s] Allocating buffers... [0.000789s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.98519s] Building query seed array... [2.27731s] Computing hash join... [6.96175s] Building seed filter... [0.104047s] Searching alignments... [182.771s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.081s] Building query seed array... [2.74165s] Computing hash join... [6.21209s] Building seed filter... [0.129852s] Searching alignments... [137.875s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.208s] Building query seed array... [2.8381s] Computing hash join... [6.37019s] Building seed filter... [0.107256s] Searching alignments... [125.196s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.75058s] Building query seed array... [2.31974s] Computing hash join... [4.81137s] Building seed filter... [0.090634s] Searching alignments... [98.7946s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.58548s] Building query seed array... [2.01979s] Computing hash join... [5.38818s] Building seed filter... [0.112821s] Searching alignments... [95.0691s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.6547s] Building query seed array... [2.43136s] Computing hash join... [5.53521s] Building seed filter... [0.1092s] Searching alignments... [73.8049s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.258s] Building query seed array... [2.49817s] Computing hash join... [5.04s] Building seed filter... [0.115162s] Searching alignments... [91.5501s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.36363s] Building query seed array... [2.03877s] Computing hash join... [5.64247s] Building seed filter... [0.104379s] Searching alignments... [81.0047s] Deallocating buffers... [1.78278s] Opening temporary output file... [0.000738s] Computing alignments... [499.352s] Deallocating reference... [0.355403s] Loading reference sequences... [39.8289s] Masking reference... [57.3335s] Initializing temporary storage... [0.006107s] Building reference histograms... [13.3002s] Allocating buffers... [0.000958s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.02418s] Building query seed array... [2.12852s] Computing hash join... [7.23893s] Building seed filter... [0.113144s] Searching alignments... [218.512s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.4239s] Building query seed array... [2.75728s] Computing hash join... [5.02899s] Building seed filter... [0.089467s] Searching alignments... [163.321s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.9914s] Building query seed array... [2.67872s] Computing hash join... [5.09226s] Building seed filter... [0.095503s] Searching alignments... [148.816s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.83543s] Building query seed array... [2.19636s] Computing hash join... [4.4433s] Building seed filter... [0.103574s] Searching alignments... [115.568s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.50982s] Building query seed array... [2.04626s] Computing hash join... [5.59688s] Building seed filter... [0.081251s] Searching alignments... [107.305s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.0476s] Building query seed array... [2.38138s] Computing hash join... [4.28271s] Building seed filter... [0.0775s] Searching alignments... [89.5745s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.3179s] Building query seed array... [2.40404s] Computing hash join... [6.1772s] Building seed filter... [0.075002s] Searching alignments... [112.316s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.37636s] Building query seed array... [1.96568s] Computing hash join... [5.96183s] Building seed filter... [0.085838s] Searching alignments... [100.708s] Deallocating buffers... [2.35265s] Opening temporary output file... [0.00172s] Computing alignments... [620.83s] Deallocating reference... [0.563769s] Loading reference sequences... [41.0886s] Masking reference... [57.5441s] Initializing temporary storage... [0.006125s] Building reference histograms... [12.1476s] Allocating buffers... [0.000788s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [8.98695s] Building query seed array... [2.07406s] Computing hash join... [8.23345s] Building seed filter... [0.086489s] Searching alignments... [143.723s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.681s] Building query seed array... [2.58022s] Computing hash join... [8.07091s] Building seed filter... [0.086463s] Searching alignments... [107.841s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.6052s] Building query seed array... [2.59852s] Computing hash join... [7.77522s] Building seed filter... [0.100242s] Searching alignments... [108.805s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.3813s] Building query seed array... [2.12467s] Computing hash join... [7.17904s] Building seed filter... [0.109448s] Searching alignments... [84.3484s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.00475s] Building query seed array... [1.79771s] Computing hash join... [7.69643s] Building seed filter... [0.086134s] Searching alignments... [105.829s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.4976s] Building query seed array... [2.25759s] Computing hash join... [7.91265s] Building seed filter... [0.077127s] Searching alignments... [68.8056s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [11.7632s] Building query seed array... [2.31107s] Computing hash join... [7.88625s] Building seed filter... [0.076852s] Searching alignments... [71.2043s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [8.84241s] Building query seed array... [1.80861s] Computing hash join... [8.01282s] Building seed filter... [0.077258s] Searching alignments... [64.7126s] Deallocating buffers... [1.05929s] Opening temporary output file... [0.000797s] Computing alignments... [432.814s] Deallocating reference... [0.064424s] Loading reference sequences... [308.963s] Masking reference... [57.8719s] Initializing temporary storage... [0.005461s] Building reference histograms... [13.1947s] Allocating buffers... [0.00078s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.95768s] Building query seed array... [2.41648s] Computing hash join... [7.66167s] Building seed filter... [0.109375s] Searching alignments... [142.875s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.93s] Building query seed array... [2.50621s] Computing hash join... [7.93257s] Building seed filter... [0.100124s] Searching alignments... [114.371s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.1836s] Building query seed array... [2.55338s] Computing hash join... [7.85716s] Building seed filter... [0.108595s] Searching alignments... [102.883s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.36889s] Building query seed array... [2.10267s] Computing hash join... [7.91669s] Building seed filter... [0.097876s] Searching alignments... [78.8569s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.02335s] Building query seed array... [1.80292s] Computing hash join... [7.69634s] Building seed filter... [0.087568s] Searching alignments... [74.8091s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.6167s] Building query seed array... [2.21716s] Computing hash join... [7.53915s] Building seed filter... [0.096354s] Searching alignments... [60.9134s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.8587s] Building query seed array... [2.2794s] Computing hash join... [7.42373s] Building seed filter... [0.116542s] Searching alignments... [73.0089s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.2878s] Building query seed array... [1.85825s] Computing hash join... [8.06826s] Building seed filter... [0.078054s] Searching alignments... [68.0367s] Deallocating buffers... [1.20229s] Opening temporary output file... [0.00074s] Computing alignments... [414.852s] Deallocating reference... [0.065643s] Loading reference sequences... [135.685s] Masking reference... [21.4155s] Initializing temporary storage... [0.005685s] Building reference histograms... [4.76666s] Allocating buffers... [0.000186s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.25249s] Building query seed array... [1.99209s] Computing hash join... [2.09954s] Building seed filter... [0.053314s] Searching alignments... [73.7478s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.19662s] Building query seed array... [2.47242s] Computing hash join... [2.15505s] Building seed filter... [0.049983s] Searching alignments... [51.843s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.28085s] Building query seed array... [2.47002s] Computing hash join... [2.16428s] Building seed filter... [0.056348s] Searching alignments... [47.9781s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.24381s] Building query seed array... [1.99979s] Computing hash join... [2.15817s] Building seed filter... [0.05362s] Searching alignments... [38.9209s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26805s] Building query seed array... [1.81011s] Computing hash join... [1.99639s] Building seed filter... [0.051626s] Searching alignments... [33.8719s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18882s] Building query seed array... [2.15026s] Computing hash join... [2.00662s] Building seed filter... [0.046422s] Searching alignments... [29.5597s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27417s] Building query seed array... [2.24527s] Computing hash join... [2.06747s] Building seed filter... [0.047236s] Searching alignments... [36.3274s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.24538s] Building query seed array... [1.80918s] Computing hash join... [1.99243s] Building seed filter... [0.046959s] Searching alignments... [31.0116s] Deallocating buffers... [0.050665s] Opening temporary output file... [0.012028s] Computing alignments... [214.91s] Deallocating reference... [0.031333s] Loading reference sequences... [0.050566s] Deallocating buffers... [0.04037s] Joining output blocks... [326.257s] Deallocating queries... [0.043471s] Loading query sequences... [4.7e-05s] Closing the input file... [5.6e-05s] Closing the output file... [0.482719s] Closing the database file... [5.2e-05s] Deallocating taxonomy... [2.2e-05s] Total time = 10166.5s Reported 4492021120 pairwise alignments, 4492089786 HSPs. 7030769 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.048168s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.074977s] Opening the output file... [0.000415s] Loading query sequences... [80.5308s] Masking queries... [56.0237s] Building query seed set... [0.33536s] Algorithm: Double-indexed Building query histograms... [3.08775s] Allocating buffers... [0.000739s] Loading reference sequences... [43.3809s] Masking reference... [58.206s] Initializing temporary storage... [0.005043s] Building reference histograms... [12.1441s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97515s] Building query seed array... [1.93523s] Computing hash join... [6.95307s] Building seed filter... [0.085836s] Searching alignments... [228.493s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.9672s] Building query seed array... [3.04326s] Computing hash join... [4.96654s] Building seed filter... [0.1083s] Searching alignments... [169.918s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.5467s] Building query seed array... [2.75992s] Computing hash join... [5.02347s] Building seed filter... [0.122208s] Searching alignments... [153.355s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.45118s] Building query seed array... [2.33043s] Computing hash join... [4.57107s] Building seed filter... [0.109637s] Searching alignments... [133.892s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.73362s] Building query seed array... [1.9198s] Computing hash join... [5.5812s] Building seed filter... [0.089309s] Searching alignments... [121.05s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.904s] Building query seed array... [2.4525s] Computing hash join... [5.98553s] Building seed filter... [0.076239s] Searching alignments... [110.453s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.2315s] Building query seed array... [2.4414s] Computing hash join... [4.33671s] Building seed filter... [0.100532s] Searching alignments... [121.776s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.45579s] Building query seed array... [2.06784s] Computing hash join... [5.46062s] Building seed filter... [0.103221s] Searching alignments... [100.495s] Deallocating buffers... [1.79214s] Opening temporary output file... [0.000744s] Computing alignments... [661.346s] Deallocating reference... [0.650231s] Loading reference sequences... [47.8024s] Masking reference... [57.0416s] Initializing temporary storage... [0.005839s] Building reference histograms... [12.1715s] Allocating buffers... [0.000222s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.37853s] Building query seed array... [2.19451s] Computing hash join... [6.61898s] Building seed filter... [0.078479s] Searching alignments... [171.913s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [13.1358s] Building query seed array... [2.7786s] Computing hash join... [5.05375s] Building seed filter... [0.168243s] Searching alignments... [123.006s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.8197s] Building query seed array... [2.81932s] Computing hash join... [5.01211s] Building seed filter... [0.094209s] Searching alignments... [114.049s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.64955s] Building query seed array... [2.25927s] Computing hash join... [4.86135s] Building seed filter... [0.075482s] Searching alignments... [99.5536s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.84374s] Building query seed array... [2.08309s] Computing hash join... [4.89305s] Building seed filter... [0.116251s] Searching alignments... [91.6933s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.0193s] Building query seed array... [2.32885s] Computing hash join... [5.10674s] Building seed filter... [0.076837s] Searching alignments... [77.2514s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.3312s] Building query seed array... [2.46061s] Computing hash join... [5.16748s] Building seed filter... [0.07392s] Searching alignments... [86.548s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.75496s] Building query seed array... [2.06961s] Computing hash join... [5.85559s] Building seed filter... [0.092358s] Searching alignments... [73.3586s] Deallocating buffers... [2.53406s] Opening temporary output file... [0.000773s] Computing alignments... [485.074s] Deallocating reference... [0.530175s] Loading reference sequences... [340.75s] Masking reference... [56.9312s] Initializing temporary storage... [0.004526s] Building reference histograms... [12.3508s] Allocating buffers... [0.000189s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.05976s] Building query seed array... [2.21317s] Computing hash join... [6.91293s] Building seed filter... [0.109748s] Searching alignments... [211.888s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.5551s] Building query seed array... [2.63189s] Computing hash join... [5.45131s] Building seed filter... [0.079156s] Searching alignments... [150.07s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.8529s] Building query seed array... [2.6162s] Computing hash join... [5.53579s] Building seed filter... [0.09494s] Searching alignments... [137.463s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.55708s] Building query seed array... [2.30685s] Computing hash join... [5.60366s] Building seed filter... [0.077853s] Searching alignments... [117.237s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.60639s] Building query seed array... [1.9614s] Computing hash join... [5.56074s] Building seed filter... [0.125998s] Searching alignments... [107.664s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.0595s] Building query seed array... [2.35888s] Computing hash join... [4.89954s] Building seed filter... [0.0995s] Searching alignments... [92.2394s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.1131s] Building query seed array... [2.36003s] Computing hash join... [4.99551s] Building seed filter... [0.079286s] Searching alignments... [104.563s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.31722s] Building query seed array... [1.95716s] Computing hash join... [4.93401s] Building seed filter... [0.090418s] Searching alignments... [86.9916s] Deallocating buffers... [2.1359s] Opening temporary output file... [0.000658s] Computing alignments... [606.701s] Deallocating reference... [0.611593s] Loading reference sequences... [326.823s] Masking reference... [57.3294s] Initializing temporary storage... [0.005029s] Building reference histograms... [12.2922s] Allocating buffers... [0.00032s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.21152s] Building query seed array... [2.1103s] Computing hash join... [5.18406s] Building seed filter... [0.116145s] Searching alignments... [142.503s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [13.1169s] Building query seed array... [2.42063s] Computing hash join... [5.92611s] Building seed filter... [0.083823s] Searching alignments... [99.3294s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.0131s] Building query seed array... [2.57336s] Computing hash join... [5.65673s] Building seed filter... [0.085619s] Searching alignments... [92.1066s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.12346s] Building query seed array... [1.98801s] Computing hash join... [5.9069s] Building seed filter... [0.0788s] Searching alignments... [87.3889s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.26715s] Building query seed array... [1.79038s] Computing hash join... [5.71213s] Building seed filter... [0.093935s] Searching alignments... [97.1125s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.6533s] Building query seed array... [2.20401s] Computing hash join... [5.76419s] Building seed filter... [0.089651s] Searching alignments... [64.2445s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.013s] Building query seed array... [2.24964s] Computing hash join... [5.51554s] Building seed filter... [0.077204s] Searching alignments... [68.7786s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.21388s] Building query seed array... [1.86098s] Computing hash join... [5.37153s] Building seed filter... [0.083061s] Searching alignments... [55.9483s] Deallocating buffers... [1.51824s] Opening temporary output file... [0.000693s] Computing alignments... [426.466s] Deallocating reference... [0.07122s] Loading reference sequences... [313.837s] Masking reference... [57.3131s] Initializing temporary storage... [0.00473s] Building reference histograms... [12.4055s] Allocating buffers... [0.000196s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.04864s] Building query seed array... [1.94047s] Computing hash join... [6.56592s] Building seed filter... [0.111067s] Searching alignments... [141.502s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.893s] Building query seed array... [2.42441s] Computing hash join... [5.61588s] Building seed filter... [0.106476s] Searching alignments... [103.804s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.5143s] Building query seed array... [2.4745s] Computing hash join... [4.62732s] Building seed filter... [0.147173s] Searching alignments... [94.6057s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.83345s] Building query seed array... [2.02149s] Computing hash join... [4.44979s] Building seed filter... [0.126139s] Searching alignments... [80.8555s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.61842s] Building query seed array... [1.77958s] Computing hash join... [5.46572s] Building seed filter... [0.111279s] Searching alignments... [75.9975s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.2092s] Building query seed array... [2.13873s] Computing hash join... [5.72802s] Building seed filter... [0.094784s] Searching alignments... [69.5563s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.5998s] Building query seed array... [2.18031s] Computing hash join... [5.23705s] Building seed filter... [0.116377s] Searching alignments... [68.6284s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.53441s] Building query seed array... [1.79518s] Computing hash join... [5.19066s] Building seed filter... [0.101s] Searching alignments... [58.0681s] Deallocating buffers... [2.38929s] Opening temporary output file... [0.000663s] Computing alignments... [409.655s] Deallocating reference... [0.063117s] Loading reference sequences... [15.0263s] Masking reference... [21.4247s] Initializing temporary storage... [0.0045s] Building reference histograms... [4.55953s] Allocating buffers... [0.00019s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.26184s] Building query seed array... [1.87755s] Computing hash join... [1.99919s] Building seed filter... [0.051765s] Searching alignments... [67.778s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.2011s] Building query seed array... [2.36051s] Computing hash join... [2.07262s] Building seed filter... [0.045318s] Searching alignments... [49.5717s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.33728s] Building query seed array... [2.33436s] Computing hash join... [2.04306s] Building seed filter... [0.053133s] Searching alignments... [44.4147s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.23439s] Building query seed array... [2.28715s] Computing hash join... [2.05344s] Building seed filter... [0.049615s] Searching alignments... [38.8359s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.31519s] Building query seed array... [1.69981s] Computing hash join... [1.99923s] Building seed filter... [0.043628s] Searching alignments... [34.0267s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18604s] Building query seed array... [2.03284s] Computing hash join... [1.94317s] Building seed filter... [0.04337s] Searching alignments... [30.9954s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26118s] Building query seed array... [2.09453s] Computing hash join... [1.90882s] Building seed filter... [0.042744s] Searching alignments... [36.2995s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.29578s] Building query seed array... [1.6836s] Computing hash join... [1.97795s] Building seed filter... [0.046125s] Searching alignments... [31.2335s] Deallocating buffers... [0.046135s] Opening temporary output file... [0.053901s] Computing alignments... [206.58s] Deallocating reference... [0.028927s] Loading reference sequences... [0.067948s] Deallocating buffers... [0.041426s] Joining output blocks... [349.508s] Deallocating queries... [0.040631s] Loading query sequences... [4e-05s] Closing the input file... [4.9e-05s] Closing the output file... [0.303559s] Closing the database file... [5.4e-05s] Deallocating taxonomy... [2.3e-05s] Total time = 10289.8s Reported 4503720348 pairwise alignments, 4503792261 HSPs. 6770970 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.042558s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.074821s] Opening the output file... [0.000424s] Loading query sequences... [79.4827s] Masking queries... [55.9499s] Building query seed set... [0.333042s] Algorithm: Double-indexed Building query histograms... [3.18227s] Allocating buffers... [0.000709s] Loading reference sequences... [43.5904s] Masking reference... [58.3558s] Initializing temporary storage... [0.005896s] Building reference histograms... [12.9181s] Allocating buffers... [0.000199s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.01863s] Building query seed array... [1.98735s] Computing hash join... [6.78594s] Building seed filter... [0.08941s] Searching alignments... [236.184s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.376s] Building query seed array... [3.16636s] Computing hash join... [5.31562s] Building seed filter... [0.10604s] Searching alignments... [181.212s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.1313s] Building query seed array... [2.86847s] Computing hash join... [4.87738s] Building seed filter... [0.109115s] Searching alignments... [157.796s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.58717s] Building query seed array... [2.39255s] Computing hash join... [6.40275s] Building seed filter... [0.086268s] Searching alignments... [131.606s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.57598s] Building query seed array... [2.08664s] Computing hash join... [5.42823s] Building seed filter... [0.09405s] Searching alignments... [112.946s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.6548s] Building query seed array... [2.44971s] Computing hash join... [5.73756s] Building seed filter... [0.081309s] Searching alignments... [98.1135s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.2185s] Building query seed array... [2.52827s] Computing hash join... [5.67288s] Building seed filter... [0.103573s] Searching alignments... [123.933s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.3128s] Building query seed array... [2.00775s] Computing hash join... [5.77801s] Building seed filter... [0.087221s] Searching alignments... [104.315s] Deallocating buffers... [1.66625s] Opening temporary output file... [0.000642s] Computing alignments... [656.424s] Deallocating reference... [0.597194s] Loading reference sequences... [345.325s] Masking reference... [56.9589s] Initializing temporary storage... [0.004518s] Building reference histograms... [12.9719s] Allocating buffers... [0.000735s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.05807s] Building query seed array... [2.29757s] Computing hash join... [6.91828s] Building seed filter... [0.140241s] Searching alignments... [173.108s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [13.1573s] Building query seed array... [2.76188s] Computing hash join... [5.07762s] Building seed filter... [0.134563s] Searching alignments... [132.773s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.6341s] Building query seed array... [2.91042s] Computing hash join... [5.13121s] Building seed filter... [0.139372s] Searching alignments... [118.643s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.87161s] Building query seed array... [2.37969s] Computing hash join... [5.03236s] Building seed filter... [0.156387s] Searching alignments... [97.0234s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.55432s] Building query seed array... [2.14395s] Computing hash join... [4.44608s] Building seed filter... [0.122533s] Searching alignments... [90.6277s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.5166s] Building query seed array... [2.46662s] Computing hash join... [5.71866s] Building seed filter... [0.126858s] Searching alignments... [70.6459s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.3494s] Building query seed array... [2.50746s] Computing hash join... [4.95806s] Building seed filter... [0.084007s] Searching alignments... [88.0961s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.62206s] Building query seed array... [2.07945s] Computing hash join... [4.79848s] Building seed filter... [0.085635s] Searching alignments... [78.3039s] Deallocating buffers... [2.21072s] Opening temporary output file... [0.00081s] Computing alignments... [480.687s] Deallocating reference... [0.559193s] Loading reference sequences... [361.114s] Masking reference... [57.2198s] Initializing temporary storage... [0.00466s] Building reference histograms... [13.3775s] Allocating buffers... [0.000211s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.07638s] Building query seed array... [2.2384s] Computing hash join... [7.15046s] Building seed filter... [0.082165s] Searching alignments... [209.478s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.8169s] Building query seed array... [2.72457s] Computing hash join... [6.75887s] Building seed filter... [0.086384s] Searching alignments... [158.818s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.9974s] Building query seed array... [2.8135s] Computing hash join... [5.41334s] Building seed filter... [0.154118s] Searching alignments... [143.353s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.98181s] Building query seed array... [2.28819s] Computing hash join... [6.49871s] Building seed filter... [0.091755s] Searching alignments... [112.544s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.66071s] Building query seed array... [2.01504s] Computing hash join... [6.64815s] Building seed filter... [0.088667s] Searching alignments... [104.015s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.1025s] Building query seed array... [2.38642s] Computing hash join... [6.13027s] Building seed filter... [0.14813s] Searching alignments... [88.4626s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.5873s] Building query seed array... [2.42485s] Computing hash join... [5.52074s] Building seed filter... [0.127584s] Searching alignments... [105.287s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.23588s] Building query seed array... [2.07802s] Computing hash join... [5.10176s] Building seed filter... [0.137745s] Searching alignments... [98.3318s] Deallocating buffers... [2.35129s] Opening temporary output file... [0.002169s] Computing alignments... [615.994s] Deallocating reference... [0.212511s] Loading reference sequences... [318.507s] Masking reference... [56.8748s] Initializing temporary storage... [0.004534s] Building reference histograms... [13.1258s] Allocating buffers... [0.000877s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.09388s] Building query seed array... [2.13351s] Computing hash join... [7.12911s] Building seed filter... [0.112391s] Searching alignments... [136.172s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.3006s] Building query seed array... [2.64194s] Computing hash join... [5.25542s] Building seed filter... [0.138848s] Searching alignments... [102.213s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.2365s] Building query seed array... [2.65614s] Computing hash join... [6.20994s] Building seed filter... [0.115542s] Searching alignments... [102.645s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [8.86971s] Building query seed array... [2.15958s] Computing hash join... [5.17016s] Building seed filter... [0.089242s] Searching alignments... [80.8871s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.81878s] Building query seed array... [1.91894s] Computing hash join... [4.68406s] Building seed filter... [0.108256s] Searching alignments... [104.957s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.2916s] Building query seed array... [2.3408s] Computing hash join... [4.49472s] Building seed filter... [0.126049s] Searching alignments... [65.279s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.5517s] Building query seed array... [2.36844s] Computing hash join... [5.22741s] Building seed filter... [0.111363s] Searching alignments... [68.3973s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.7425s] Building query seed array... [1.93477s] Computing hash join... [5.02144s] Building seed filter... [0.129221s] Searching alignments... [61.8412s] Deallocating buffers... [2.06265s] Opening temporary output file... [0.000758s] Computing alignments... [414.715s] Deallocating reference... [0.558387s] Loading reference sequences... [312.042s] Masking reference... [57.1351s] Initializing temporary storage... [0.004431s] Building reference histograms... [13.358s] Allocating buffers... [0.000726s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.09769s] Building query seed array... [2.43531s] Computing hash join... [7.26314s] Building seed filter... [0.09758s] Searching alignments... [133.332s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.2288s] Building query seed array... [2.55227s] Computing hash join... [4.52313s] Building seed filter... [0.141511s] Searching alignments... [100.769s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.8249s] Building query seed array... [2.71047s] Computing hash join... [5.25242s] Building seed filter... [0.103927s] Searching alignments... [97.9256s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.74178s] Building query seed array... [2.13795s] Computing hash join... [4.9008s] Building seed filter... [0.129346s] Searching alignments... [74.2153s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.5537s] Building query seed array... [1.85886s] Computing hash join... [4.63045s] Building seed filter... [0.123839s] Searching alignments... [69.7593s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.0481s] Building query seed array... [2.23663s] Computing hash join... [5.28519s] Building seed filter... [0.117195s] Searching alignments... [57.501s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.424s] Building query seed array... [2.2738s] Computing hash join... [4.91575s] Building seed filter... [0.08898s] Searching alignments... [67.5428s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.54083s] Building query seed array... [1.83714s] Computing hash join... [4.79996s] Building seed filter... [0.102451s] Searching alignments... [64.5275s] Deallocating buffers... [2.12016s] Opening temporary output file... [0.000566s] Computing alignments... [398.898s] Deallocating reference... [0.635588s] Loading reference sequences... [15.0769s] Masking reference... [21.5241s] Initializing temporary storage... [0.005173s] Building reference histograms... [4.89245s] Allocating buffers... [0.000188s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.31834s] Building query seed array... [1.96581s] Computing hash join... [2.07151s] Building seed filter... [0.052413s] Searching alignments... [70.1822s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.27041s] Building query seed array... [2.46529s] Computing hash join... [2.09286s] Building seed filter... [0.051802s] Searching alignments... [50.2225s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30975s] Building query seed array... [2.41884s] Computing hash join... [2.09197s] Building seed filter... [0.051359s] Searching alignments... [48.3371s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.27529s] Building query seed array... [1.97876s] Computing hash join... [2.1145s] Building seed filter... [0.056169s] Searching alignments... [38.1301s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.27501s] Building query seed array... [1.78641s] Computing hash join... [1.9574s] Building seed filter... [0.060549s] Searching alignments... [32.5033s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.21171s] Building query seed array... [2.15341s] Computing hash join... [2.00203s] Building seed filter... [0.057152s] Searching alignments... [28.7066s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.37826s] Building query seed array... [2.14837s] Computing hash join... [1.96886s] Building seed filter... [0.049018s] Searching alignments... [35.556s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22769s] Building query seed array... [1.73783s] Computing hash join... [1.9722s] Building seed filter... [0.055705s] Searching alignments... [30.0266s] Deallocating buffers... [0.05243s] Opening temporary output file... [0.020561s] Computing alignments... [205.105s] Deallocating reference... [0.029375s] Loading reference sequences... [0.038015s] Deallocating buffers... [0.043941s] Joining output blocks... [314.042s] Deallocating queries... [0.037259s] Loading query sequences... [2.6e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.30679s] Closing the database file... [2.7e-05s] Deallocating taxonomy... [9e-06s] Total time = 10572.6s Reported 4324310067 pairwise alignments, 4324375962 HSPs. 6788290 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.068362s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.097102s] Opening the output file... [0.000427s] Loading query sequences... [64.8471s] Masking queries... [44.7698s] Building query seed set... [0.270543s] Algorithm: Double-indexed Building query histograms... [2.38911s] Allocating buffers... [0.000683s] Loading reference sequences... [42.9214s] Masking reference... [58.4751s] Initializing temporary storage... [0.005363s] Building reference histograms... [13.4817s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.0749s] Building query seed array... [1.62335s] Computing hash join... [7.06196s] Building seed filter... [0.104598s] Searching alignments... [163.708s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.1421s] Building query seed array... [2.52853s] Computing hash join... [6.41692s] Building seed filter... [0.094594s] Searching alignments... [124.145s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.5737s] Building query seed array... [2.15413s] Computing hash join... [4.91947s] Building seed filter... [0.092042s] Searching alignments... [110.258s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.33723s] Building query seed array... [1.93422s] Computing hash join... [5.86708s] Building seed filter... [0.148206s] Searching alignments... [98.8409s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.29632s] Building query seed array... [1.52919s] Computing hash join... [5.8089s] Building seed filter... [0.086717s] Searching alignments... [88.3215s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.8266s] Building query seed array... [1.90424s] Computing hash join... [5.79338s] Building seed filter... [0.135363s] Searching alignments... [74.7985s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.0858s] Building query seed array... [2.05476s] Computing hash join... [4.38479s] Building seed filter... [0.113153s] Searching alignments... [85.7726s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.2576s] Building query seed array... [1.60947s] Computing hash join... [5.85411s] Building seed filter... [0.082463s] Searching alignments... [72.8647s] Deallocating buffers... [1.56707s] Opening temporary output file... [0.000745s] Computing alignments... [502.507s] Deallocating reference... [0.58135s] Loading reference sequences... [342.011s] Masking reference... [57.0131s] Initializing temporary storage... [0.004845s] Building reference histograms... [12.1927s] Allocating buffers... [0.000197s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.94959s] Building query seed array... [1.81727s] Computing hash join... [4.8232s] Building seed filter... [0.110313s] Searching alignments... [126.242s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.1829s] Building query seed array... [2.1225s] Computing hash join... [5.39097s] Building seed filter... [0.091932s] Searching alignments... [89.1125s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.1207s] Building query seed array... [2.28285s] Computing hash join... [4.88773s] Building seed filter... [0.083292s] Searching alignments... [84.9501s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.30008s] Building query seed array... [1.89623s] Computing hash join... [5.03869s] Building seed filter... [0.104306s] Searching alignments... [79.0405s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [8.94595s] Building query seed array... [1.62084s] Computing hash join... [5.15019s] Building seed filter... [0.080419s] Searching alignments... [76.1862s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.5812s] Building query seed array... [2.20361s] Computing hash join... [4.50221s] Building seed filter... [0.081861s] Searching alignments... [53.4855s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.7161s] Building query seed array... [1.89693s] Computing hash join... [4.4175s] Building seed filter... [0.077811s] Searching alignments... [61.0245s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.89776s] Building query seed array... [1.70067s] Computing hash join... [5.11447s] Building seed filter... [0.079847s] Searching alignments... [52.3372s] Deallocating buffers... [1.01343s] Opening temporary output file... [0.000607s] Computing alignments... [375.023s] Deallocating reference... [0.077092s] Loading reference sequences... [344.678s] Masking reference... [57.3168s] Initializing temporary storage... [0.004686s] Building reference histograms... [12.9764s] Allocating buffers... [0.000185s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.12826s] Building query seed array... [1.84695s] Computing hash join... [7.06013s] Building seed filter... [0.104097s] Searching alignments... [160.975s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.447s] Building query seed array... [2.22407s] Computing hash join... [6.35067s] Building seed filter... [0.091022s] Searching alignments... [135.953s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.6783s] Building query seed array... [2.18549s] Computing hash join... [6.19125s] Building seed filter... [0.098492s] Searching alignments... [102.262s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.87848s] Building query seed array... [1.97786s] Computing hash join... [5.12639s] Building seed filter... [0.128005s] Searching alignments... [88.9s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.6167s] Building query seed array... [1.70716s] Computing hash join... [5.23703s] Building seed filter... [0.120077s] Searching alignments... [81.3315s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.9503s] Building query seed array... [1.94931s] Computing hash join... [6.11361s] Building seed filter... [0.121483s] Searching alignments... [71.1531s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.701s] Building query seed array... [1.99946s] Computing hash join... [5.4846s] Building seed filter... [0.130201s] Searching alignments... [109.086s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.6013s] Building query seed array... [1.68695s] Computing hash join... [5.6533s] Building seed filter... [0.123598s] Searching alignments... [63.0112s] Deallocating buffers... [2.32294s] Opening temporary output file... [0.000786s] Computing alignments... [500.656s] Deallocating reference... [0.127827s] Loading reference sequences... [321.236s] Masking reference... [57.0909s] Initializing temporary storage... [0.005949s] Building reference histograms... [12.4104s] Allocating buffers... [0.000197s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.06532s] Building query seed array... [1.81368s] Computing hash join... [5.99598s] Building seed filter... [0.148512s] Searching alignments... [119.345s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [13.5671s] Building query seed array... [2.212s] Computing hash join... [4.7266s] Building seed filter... [0.091788s] Searching alignments... [97.4079s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.629s] Building query seed array... [2.22497s] Computing hash join... [5.4846s] Building seed filter... [0.087322s] Searching alignments... [84.8507s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.79409s] Building query seed array... [1.75676s] Computing hash join... [6.02052s] Building seed filter... [0.081475s] Searching alignments... [102.019s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.56512s] Building query seed array... [1.70934s] Computing hash join... [4.35662s] Building seed filter... [0.132678s] Searching alignments... [102.962s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.2524s] Building query seed array... [1.97277s] Computing hash join... [4.92371s] Building seed filter... [0.078025s] Searching alignments... [67.6067s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.2894s] Building query seed array... [1.99157s] Computing hash join... [4.92666s] Building seed filter... [0.079101s] Searching alignments... [64.4743s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.41617s] Building query seed array... [1.65054s] Computing hash join... [4.53987s] Building seed filter... [0.110334s] Searching alignments... [45.0387s] Deallocating buffers... [2.23526s] Opening temporary output file... [0.000649s] Computing alignments... [383.309s] Deallocating reference... [0.374814s] Loading reference sequences... [314.142s] Masking reference... [57.1217s] Initializing temporary storage... [0.005374s] Building reference histograms... [13.028s] Allocating buffers... [0.000209s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.07755s] Building query seed array... [1.78944s] Computing hash join... [6.95876s] Building seed filter... [0.107008s] Searching alignments... [108.551s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.7243s] Building query seed array... [2.1196s] Computing hash join... [5.04246s] Building seed filter... [0.113442s] Searching alignments... [79.7085s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.3195s] Building query seed array... [2.26583s] Computing hash join... [5.56665s] Building seed filter... [0.088912s] Searching alignments... [74.017s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [10.3041s] Building query seed array... [1.87681s] Computing hash join... [4.8783s] Building seed filter... [0.11908s] Searching alignments... [62.1892s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.68063s] Building query seed array... [1.65991s] Computing hash join... [4.49628s] Building seed filter... [0.120034s] Searching alignments... [56.3714s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.921s] Building query seed array... [1.96114s] Computing hash join... [4.92059s] Building seed filter... [0.085629s] Searching alignments... [63.3164s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.0809s] Building query seed array... [1.97688s] Computing hash join... [4.75039s] Building seed filter... [0.079596s] Searching alignments... [49.3282s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.94163s] Building query seed array... [1.62089s] Computing hash join... [4.17357s] Building seed filter... [0.131203s] Searching alignments... [55.5028s] Deallocating buffers... [2.11237s] Opening temporary output file... [0.000645s] Computing alignments... [332.255s] Deallocating reference... [0.453226s] Loading reference sequences... [15.4166s] Masking reference... [21.5676s] Initializing temporary storage... [0.003695s] Building reference histograms... [4.50973s] Allocating buffers... [0.000169s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.34151s] Building query seed array... [1.84144s] Computing hash join... [1.92216s] Building seed filter... [0.058639s] Searching alignments... [48.1811s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.2248s] Building query seed array... [2.02389s] Computing hash join... [2.18097s] Building seed filter... [0.049044s] Searching alignments... [50.4993s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31156s] Building query seed array... [2.18177s] Computing hash join... [1.9733s] Building seed filter... [0.050265s] Searching alignments... [33.7606s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.33761s] Building query seed array... [1.82612s] Computing hash join... [1.97763s] Building seed filter... [0.051645s] Searching alignments... [29.5265s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26254s] Building query seed array... [1.64709s] Computing hash join... [1.82573s] Building seed filter... [0.049795s] Searching alignments... [27.1827s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.15906s] Building query seed array... [1.92967s] Computing hash join... [1.88548s] Building seed filter... [0.048441s] Searching alignments... [23.3366s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.26965s] Building query seed array... [1.89497s] Computing hash join... [1.82519s] Building seed filter... [0.048271s] Searching alignments... [25.7467s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.25208s] Building query seed array... [1.61351s] Computing hash join... [1.83877s] Building seed filter... [0.047845s] Searching alignments... [26.2096s] Deallocating buffers... [0.052249s] Opening temporary output file... [0.010319s] Computing alignments... [171.339s] Deallocating reference... [0.031053s] Loading reference sequences... [0.023971s] Deallocating buffers... [0.53223s] Joining output blocks... [367.595s] Deallocating queries... [0.033887s] Loading query sequences... [3.8e-05s] Closing the input file... [7.7e-05s] Closing the output file... [0.373461s] Closing the database file... [2.8e-05s] Deallocating taxonomy... [9e-06s] Total time = 9055.58s Reported 3094211322 pairwise alignments, 3094256744 HSPs. 5189620 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.078186s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.1s] Opening the output file... [0.000404s] Loading query sequences... [64.5831s] Masking queries... [45.054s] Building query seed set... [0.273408s] Algorithm: Double-indexed Building query histograms... [2.51631s] Allocating buffers... [0.00075s] Loading reference sequences... [41.6557s] Masking reference... [58.6813s] Initializing temporary storage... [0.004432s] Building reference histograms... [12.958s] Allocating buffers... [0.000196s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.97838s] Building query seed array... [1.66178s] Computing hash join... [5.1638s] Building seed filter... [0.10537s] Searching alignments... [161.247s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.5895s] Building query seed array... [2.41858s] Computing hash join... [5.83073s] Building seed filter... [0.083831s] Searching alignments... [136.622s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.9181s] Building query seed array... [2.3196s] Computing hash join... [5.19915s] Building seed filter... [0.085966s] Searching alignments... [114.495s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.83854s] Building query seed array... [1.82467s] Computing hash join... [5.46775s] Building seed filter... [0.102006s] Searching alignments... [96.2811s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.87904s] Building query seed array... [1.66111s] Computing hash join... [4.6352s] Building seed filter... [0.098981s] Searching alignments... [84.7339s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.3967s] Building query seed array... [1.99221s] Computing hash join... [5.30901s] Building seed filter... [0.08024s] Searching alignments... [69.4967s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.598s] Building query seed array... [1.99001s] Computing hash join... [5.2498s] Building seed filter... [0.081768s] Searching alignments... [90.6877s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.90149s] Building query seed array... [1.61068s] Computing hash join... [5.3031s] Building seed filter... [0.086849s] Searching alignments... [79.3274s] Deallocating buffers... [0.743294s] Opening temporary output file... [0.000665s] Computing alignments... [506.476s] Deallocating reference... [0.207876s] Loading reference sequences... [44.4105s] Masking reference... [56.9983s] Initializing temporary storage... [0.006348s] Building reference histograms... [13.1302s] Allocating buffers... [0.000199s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.06769s] Building query seed array... [1.89115s] Computing hash join... [6.60438s] Building seed filter... [0.091408s] Searching alignments... [115.674s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [13.1039s] Building query seed array... [2.29191s] Computing hash join... [4.83804s] Building seed filter... [0.102961s] Searching alignments... [93.5151s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.801s] Building query seed array... [2.32416s] Computing hash join... [4.52063s] Building seed filter... [0.105888s] Searching alignments... [90.5138s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [10.122s] Building query seed array... [1.94037s] Computing hash join... [4.32357s] Building seed filter... [0.099293s] Searching alignments... [68.424s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.70715s] Building query seed array... [1.75249s] Computing hash join... [5.02214s] Building seed filter... [0.13475s] Searching alignments... [95.8864s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.3705s] Building query seed array... [2.04632s] Computing hash join... [6.25019s] Building seed filter... [0.089331s] Searching alignments... [49.4606s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.3089s] Building query seed array... [1.98977s] Computing hash join... [5.60896s] Building seed filter... [0.09762s] Searching alignments... [59.0647s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.44917s] Building query seed array... [1.70659s] Computing hash join... [6.02223s] Building seed filter... [0.091273s] Searching alignments... [59.3641s] Deallocating buffers... [2.11977s] Opening temporary output file... [0.000608s] Computing alignments... [369.256s] Deallocating reference... [0.190288s] Loading reference sequences... [47.6569s] Masking reference... [58.7236s] Initializing temporary storage... [0.004265s] Building reference histograms... [13.1931s] Allocating buffers... [0.000191s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.04169s] Building query seed array... [1.8901s] Computing hash join... [6.1317s] Building seed filter... [0.103164s] Searching alignments... [142.22s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.3272s] Building query seed array... [2.29097s] Computing hash join... [4.72765s] Building seed filter... [0.113244s] Searching alignments... [112.722s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.4138s] Building query seed array... [2.28429s] Computing hash join... [4.87105s] Building seed filter... [0.097618s] Searching alignments... [107.301s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.40536s] Building query seed array... [2.20547s] Computing hash join... [4.30938s] Building seed filter... [0.1228s] Searching alignments... [83.2571s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.17255s] Building query seed array... [1.68984s] Computing hash join... [4.55053s] Building seed filter... [0.101066s] Searching alignments... [76.7265s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.7074s] Building query seed array... [2.01272s] Computing hash join... [4.51065s] Building seed filter... [0.097888s] Searching alignments... [67.19s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.0943s] Building query seed array... [2.07568s] Computing hash join... [4.31438s] Building seed filter... [0.109959s] Searching alignments... [77.4234s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.32771s] Building query seed array... [1.60119s] Computing hash join... [4.81403s] Building seed filter... [0.104261s] Searching alignments... [73.2057s] Deallocating buffers... [1.70839s] Opening temporary output file... [0.000741s] Computing alignments... [461.911s] Deallocating reference... [0.405155s] Loading reference sequences... [53.5634s] Masking reference... [57.3761s] Initializing temporary storage... [0.00645s] Building reference histograms... [13.0216s] Allocating buffers... [0.000195s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.04786s] Building query seed array... [1.868s] Computing hash join... [7.04273s] Building seed filter... [0.08643s] Searching alignments... [139.349s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.4354s] Building query seed array... [2.23283s] Computing hash join... [6.09127s] Building seed filter... [0.112776s] Searching alignments... [95.9835s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.434s] Building query seed array... [2.34657s] Computing hash join... [5.40323s] Building seed filter... [0.123016s] Searching alignments... [85.9202s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.63287s] Building query seed array... [1.92778s] Computing hash join... [5.25046s] Building seed filter... [0.100296s] Searching alignments... [84.1325s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.48681s] Building query seed array... [1.63074s] Computing hash join... [4.65729s] Building seed filter... [0.087967s] Searching alignments... [138.318s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.1929s] Building query seed array... [2.04368s] Computing hash join... [4.63192s] Building seed filter... [0.109901s] Searching alignments... [62.3818s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.5405s] Building query seed array... [2.04551s] Computing hash join... [4.35253s] Building seed filter... [0.114553s] Searching alignments... [62.7745s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.51455s] Building query seed array... [1.71982s] Computing hash join... [4.29516s] Building seed filter... [0.131909s] Searching alignments... [49.8799s] Deallocating buffers... [2.20215s] Opening temporary output file... [0.00071s] Computing alignments... [368.573s] Deallocating reference... [0.225661s] Loading reference sequences... [306.474s] Masking reference... [57.3239s] Initializing temporary storage... [0.005743s] Building reference histograms... [13.2226s] Allocating buffers... [0.00019s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.02866s] Building query seed array... [1.90703s] Computing hash join... [6.22403s] Building seed filter... [0.107148s] Searching alignments... [96.5641s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.472s] Building query seed array... [2.26512s] Computing hash join... [4.96707s] Building seed filter... [0.088419s] Searching alignments... [78.6073s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.1693s] Building query seed array... [2.26735s] Computing hash join... [5.5933s] Building seed filter... [0.097916s] Searching alignments... [78.4439s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.39656s] Building query seed array... [1.88515s] Computing hash join... [5.84419s] Building seed filter... [0.100015s] Searching alignments... [58.0445s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.17039s] Building query seed array... [1.68532s] Computing hash join... [5.46363s] Building seed filter... [0.08931s] Searching alignments... [56.2482s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.5922s] Building query seed array... [1.87036s] Computing hash join... [5.37115s] Building seed filter... [0.082483s] Searching alignments... [46.1299s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.8535s] Building query seed array... [2.01864s] Computing hash join... [5.43148s] Building seed filter... [0.102989s] Searching alignments... [52.8632s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.30508s] Building query seed array... [1.70408s] Computing hash join... [5.43553s] Building seed filter... [0.089068s] Searching alignments... [50.4626s] Deallocating buffers... [1.34046s] Opening temporary output file... [0.000766s] Computing alignments... [317.535s] Deallocating reference... [0.130382s] Loading reference sequences... [18.4526s] Masking reference... [21.4252s] Initializing temporary storage... [0.004346s] Building reference histograms... [4.77367s] Allocating buffers... [0.000186s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.26131s] Building query seed array... [1.72185s] Computing hash join... [1.93122s] Building seed filter... [0.055807s] Searching alignments... [48.8262s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.2156s] Building query seed array... [2.19027s] Computing hash join... [1.94843s] Building seed filter... [0.050179s] Searching alignments... [40.3474s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.27539s] Building query seed array... [2.18278s] Computing hash join... [1.94973s] Building seed filter... [0.05439s] Searching alignments... [34.5946s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.29625s] Building query seed array... [1.83331s] Computing hash join... [1.96264s] Building seed filter... [0.049391s] Searching alignments... [26.8875s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.25048s] Building query seed array... [1.62865s] Computing hash join... [1.84107s] Building seed filter... [0.047588s] Searching alignments... [27.1259s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.31884s] Building query seed array... [1.91955s] Computing hash join... [1.8847s] Building seed filter... [0.050473s] Searching alignments... [22.9738s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.28554s] Building query seed array... [1.94468s] Computing hash join... [1.85762s] Building seed filter... [0.047865s] Searching alignments... [23.8446s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22255s] Building query seed array... [1.63354s] Computing hash join... [1.81508s] Building seed filter... [0.047979s] Searching alignments... [23.8652s] Deallocating buffers... [0.048762s] Opening temporary output file... [0.01403s] Computing alignments... [159.666s] Deallocating reference... [0.030774s] Loading reference sequences... [0.013866s] Deallocating buffers... [0.580441s] Joining output blocks... [232.266s] Deallocating queries... [0.032858s] Loading query sequences... [4.4e-05s] Closing the input file... [4.2e-05s] Closing the output file... [0.417068s] Closing the database file... [4.8e-05s] Deallocating taxonomy... [1.8e-05s] Total time = 7903.87s Reported 2842696995 pairwise alignments, 2842732400 HSPs. 4912147 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.04579s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.088352s] Opening the output file... [0.000402s] Loading query sequences... [57.3104s] Masking queries... [56.4393s] Building query seed set... [0.246261s] Algorithm: Double-indexed Building query histograms... [2.19663s] Allocating buffers... [0.000688s] Loading reference sequences... [373.011s] Masking reference... [57.9703s] Initializing temporary storage... [0.00528s] Building reference histograms... [12.764s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.05392s] Building query seed array... [1.37263s] Computing hash join... [5.96715s] Building seed filter... [0.1048s] Searching alignments... [144.413s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.6743s] Building query seed array... [2.06613s] Computing hash join... [6.05464s] Building seed filter... [0.084221s] Searching alignments... [107.768s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.8847s] Building query seed array... [1.81306s] Computing hash join... [5.90918s] Building seed filter... [0.095033s] Searching alignments... [96.6825s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.00002s] Building query seed array... [1.50939s] Computing hash join... [5.19401s] Building seed filter... [0.079072s] Searching alignments... [86.2491s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.04877s] Building query seed array... [1.30443s] Computing hash join... [5.75189s] Building seed filter... [0.076597s] Searching alignments... [77.6117s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.5931s] Building query seed array... [1.69588s] Computing hash join... [4.94552s] Building seed filter... [0.099017s] Searching alignments... [65.7473s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.7838s] Building query seed array... [1.63895s] Computing hash join... [5.34831s] Building seed filter... [0.096198s] Searching alignments... [73.9042s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.08636s] Building query seed array... [1.34976s] Computing hash join... [5.34933s] Building seed filter... [0.097005s] Searching alignments... [62.7737s] Deallocating buffers... [1.09136s] Opening temporary output file... [0.000591s] Computing alignments... [445.714s] Deallocating reference... [0.081697s] Loading reference sequences... [349.053s] Masking reference... [59.3015s] Initializing temporary storage... [0.004717s] Building reference histograms... [13.6934s] Allocating buffers... [0.000194s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.99335s] Building query seed array... [1.5195s] Computing hash join... [5.55206s] Building seed filter... [0.088377s] Searching alignments... [111.227s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.058s] Building query seed array... [1.86147s] Computing hash join... [4.34329s] Building seed filter... [0.09821s] Searching alignments... [77.0015s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.1163s] Building query seed array... [1.88705s] Computing hash join... [5.23671s] Building seed filter... [0.110401s] Searching alignments... [74.9589s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.34393s] Building query seed array... [1.54123s] Computing hash join... [5.28222s] Building seed filter... [0.105184s] Searching alignments... [67.1909s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.01323s] Building query seed array... [1.35979s] Computing hash join... [4.674s] Building seed filter... [0.099223s] Searching alignments... [67.61s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.3984s] Building query seed array... [1.57667s] Computing hash join... [4.58309s] Building seed filter... [0.080535s] Searching alignments... [47.1318s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.6399s] Building query seed array... [1.67794s] Computing hash join... [5.3641s] Building seed filter... [0.089648s] Searching alignments... [53.2912s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.84727s] Building query seed array... [1.28876s] Computing hash join... [5.16798s] Building seed filter... [0.079009s] Searching alignments... [44.9375s] Deallocating buffers... [0.88698s] Opening temporary output file... [0.000691s] Computing alignments... [329.251s] Deallocating reference... [0.075022s] Loading reference sequences... [351.095s] Masking reference... [57.4621s] Initializing temporary storage... [0.00596s] Building reference histograms... [13.3513s] Allocating buffers... [0.000199s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.02503s] Building query seed array... [1.42338s] Computing hash join... [5.21711s] Building seed filter... [0.128117s] Searching alignments... [141.631s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [13.5284s] Building query seed array... [1.79059s] Computing hash join... [5.62767s] Building seed filter... [0.090615s] Searching alignments... [118.046s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.3733s] Building query seed array... [1.84536s] Computing hash join... [4.48836s] Building seed filter... [0.101857s] Searching alignments... [88.788s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.48868s] Building query seed array... [1.50466s] Computing hash join... [4.657s] Building seed filter... [0.079112s] Searching alignments... [77.4437s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.50453s] Building query seed array... [1.34234s] Computing hash join... [5.16463s] Building seed filter... [0.087595s] Searching alignments... [69.9003s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.1268s] Building query seed array... [1.58596s] Computing hash join... [4.61071s] Building seed filter... [0.098447s] Searching alignments... [59.3551s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.2341s] Building query seed array... [1.6401s] Computing hash join... [5.17396s] Building seed filter... [0.105597s] Searching alignments... [95.9329s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.19264s] Building query seed array... [1.29469s] Computing hash join... [5.28566s] Building seed filter... [0.08784s] Searching alignments... [55.3345s] Deallocating buffers... [1.72519s] Opening temporary output file... [0.00074s] Computing alignments... [446.53s] Deallocating reference... [0.090142s] Loading reference sequences... [345.217s] Masking reference... [57.5743s] Initializing temporary storage... [0.22717s] Building reference histograms... [13.5349s] Allocating buffers... [0.000193s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.12259s] Building query seed array... [1.36791s] Computing hash join... [6.34861s] Building seed filter... [0.108172s] Searching alignments... [108.628s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.9871s] Building query seed array... [1.74046s] Computing hash join... [4.59743s] Building seed filter... [0.08871s] Searching alignments... [81.2596s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.5243s] Building query seed array... [1.74838s] Computing hash join... [4.97403s] Building seed filter... [0.098845s] Searching alignments... [74.5394s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.48282s] Building query seed array... [1.42769s] Computing hash join... [5.4722s] Building seed filter... [0.08331s] Searching alignments... [75.0077s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.59868s] Building query seed array... [1.29268s] Computing hash join... [4.41608s] Building seed filter... [0.121778s] Searching alignments... [89.9996s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.96s] Building query seed array... [1.55562s] Computing hash join... [4.64935s] Building seed filter... [0.090789s] Searching alignments... [56.7706s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.7045s] Building query seed array... [1.5877s] Computing hash join... [5.19619s] Building seed filter... [0.115784s] Searching alignments... [59.9499s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.71291s] Building query seed array... [1.3112s] Computing hash join... [4.54075s] Building seed filter... [0.114935s] Searching alignments... [45.1408s] Deallocating buffers... [2.19495s] Opening temporary output file... [0.000711s] Computing alignments... [342.666s] Deallocating reference... [0.238063s] Loading reference sequences... [315.295s] Masking reference... [57.5254s] Initializing temporary storage... [0.005321s] Building reference histograms... [12.9916s] Allocating buffers... [0.000191s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.05449s] Building query seed array... [1.36269s] Computing hash join... [6.95467s] Building seed filter... [0.102642s] Searching alignments... [98.2086s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.7711s] Building query seed array... [1.71579s] Computing hash join... [5.66599s] Building seed filter... [0.153027s] Searching alignments... [70.383s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.7978s] Building query seed array... [1.75054s] Computing hash join... [6.06318s] Building seed filter... [0.089944s] Searching alignments... [63.5428s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.66346s] Building query seed array... [1.44669s] Computing hash join... [5.30445s] Building seed filter... [0.085878s] Searching alignments... [53.6874s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.99613s] Building query seed array... [1.31321s] Computing hash join... [5.07022s] Building seed filter... [0.120323s] Searching alignments... [50.2553s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.8307s] Building query seed array... [1.62284s] Computing hash join... [5.49499s] Building seed filter... [0.084277s] Searching alignments... [57.2714s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.235s] Building query seed array... [1.5517s] Computing hash join... [5.51152s] Building seed filter... [0.078662s] Searching alignments... [46.1728s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.56371s] Building query seed array... [1.3065s] Computing hash join... [5.21706s] Building seed filter... [0.089266s] Searching alignments... [46.0228s] Deallocating buffers... [2.06714s] Opening temporary output file... [0.000598s] Computing alignments... [298.158s] Deallocating reference... [0.184388s] Loading reference sequences... [15.0917s] Masking reference... [21.6638s] Initializing temporary storage... [0.006155s] Building reference histograms... [4.97088s] Allocating buffers... [0.000185s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.24751s] Building query seed array... [1.36847s] Computing hash join... [1.90595s] Building seed filter... [0.054825s] Searching alignments... [42.0613s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.28429s] Building query seed array... [1.63539s] Computing hash join... [1.92154s] Building seed filter... [0.055123s] Searching alignments... [45.1261s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.29505s] Building query seed array... [1.66117s] Computing hash join... [1.90824s] Building seed filter... [0.049837s] Searching alignments... [29.1996s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25424s] Building query seed array... [1.34595s] Computing hash join... [1.88246s] Building seed filter... [0.054735s] Searching alignments... [25.0635s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.2471s] Building query seed array... [1.21696s] Computing hash join... [1.79087s] Building seed filter... [0.045966s] Searching alignments... [23.3969s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.15266s] Building query seed array... [1.61183s] Computing hash join... [1.8019s] Building seed filter... [0.046728s] Searching alignments... [20.6597s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27934s] Building query seed array... [1.51691s] Computing hash join... [1.79313s] Building seed filter... [0.04536s] Searching alignments... [22.1883s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22792s] Building query seed array... [1.21262s] Computing hash join... [1.78178s] Building seed filter... [0.047107s] Searching alignments... [22.8842s] Deallocating buffers... [0.052119s] Opening temporary output file... [0.021516s] Computing alignments... [148.877s] Deallocating reference... [0.030341s] Loading reference sequences... [0.027586s] Deallocating buffers... [0.022889s] Joining output blocks... [328.04s] Deallocating queries... [0.032522s] Loading query sequences... [3.1e-05s] Closing the input file... [4.7e-05s] Closing the output file... [0.475806s] Closing the database file... [2.9e-05s] Deallocating taxonomy... [9e-06s] Total time = 8631.59s Reported 2717610934 pairwise alignments, 2717649018 HSPs. 4559998 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.077537s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.065547s] Opening the output file... [0.001196s] Loading query sequences... [58.256s] Masking queries... [46.853s] Building query seed set... [0.246359s] Algorithm: Double-indexed Building query histograms... [2.21763s] Allocating buffers... [0.000723s] Loading reference sequences... [42.8829s] Masking reference... [58.5427s] Initializing temporary storage... [0.005508s] Building reference histograms... [12.7444s] Allocating buffers... [0.000224s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.01908s] Building query seed array... [1.41729s] Computing hash join... [6.99787s] Building seed filter... [0.097883s] Searching alignments... [135.221s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.9576s] Building query seed array... [2.19794s] Computing hash join... [4.63231s] Building seed filter... [0.081605s] Searching alignments... [115.005s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.4801s] Building query seed array... [1.9418s] Computing hash join... [5.75004s] Building seed filter... [0.183784s] Searching alignments... [101.099s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.47919s] Building query seed array... [1.66262s] Computing hash join... [4.58261s] Building seed filter... [0.113865s] Searching alignments... [79.4043s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.29874s] Building query seed array... [1.48682s] Computing hash join... [4.63909s] Building seed filter... [0.104103s] Searching alignments... [73.0526s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.8665s] Building query seed array... [1.72534s] Computing hash join... [5.90729s] Building seed filter... [0.086181s] Searching alignments... [59.7162s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.0907s] Building query seed array... [1.79735s] Computing hash join... [5.07931s] Building seed filter... [0.09673s] Searching alignments... [74.6429s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.32516s] Building query seed array... [1.45409s] Computing hash join... [5.58946s] Building seed filter... [0.099255s] Searching alignments... [68.1341s] Deallocating buffers... [1.66555s] Opening temporary output file... [0.001758s] Computing alignments... [440.331s] Deallocating reference... [0.556674s] Loading reference sequences... [354.204s] Masking reference... [57.1949s] Initializing temporary storage... [0.0047s] Building reference histograms... [12.0951s] Allocating buffers... [0.000206s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.11544s] Building query seed array... [1.60737s] Computing hash join... [6.80513s] Building seed filter... [0.131431s] Searching alignments... [100.678s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.8522s] Building query seed array... [2.00967s] Computing hash join... [4.49223s] Building seed filter... [0.111164s] Searching alignments... [80.6946s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.3392s] Building query seed array... [2.0781s] Computing hash join... [4.34773s] Building seed filter... [0.092323s] Searching alignments... [77.5691s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [10.1421s] Building query seed array... [1.72073s] Computing hash join... [4.49981s] Building seed filter... [0.102723s] Searching alignments... [59.1196s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.65648s] Building query seed array... [1.54695s] Computing hash join... [4.29928s] Building seed filter... [0.075953s] Searching alignments... [82.3633s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.2163s] Building query seed array... [1.72423s] Computing hash join... [4.57951s] Building seed filter... [0.081574s] Searching alignments... [41.4464s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.1606s] Building query seed array... [1.77337s] Computing hash join... [4.23209s] Building seed filter... [0.07812s] Searching alignments... [51.0502s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.57747s] Building query seed array... [1.49952s] Computing hash join... [4.28915s] Building seed filter... [0.130085s] Searching alignments... [51.165s] Deallocating buffers... [2.24197s] Opening temporary output file... [0.000633s] Computing alignments... [319.999s] Deallocating reference... [0.594848s] Loading reference sequences... [351.079s] Masking reference... [57.0273s] Initializing temporary storage... [0.005378s] Building reference histograms... [12.0733s] Allocating buffers... [0.000182s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [8.9821s] Building query seed array... [1.67649s] Computing hash join... [6.86205s] Building seed filter... [0.118069s] Searching alignments... [120.879s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [13.2691s] Building query seed array... [1.95631s] Computing hash join... [5.86283s] Building seed filter... [0.134333s] Searching alignments... [97.0286s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.7203s] Building query seed array... [2.01952s] Computing hash join... [6.09442s] Building seed filter... [0.093853s] Searching alignments... [92.0328s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [10.3605s] Building query seed array... [1.6275s] Computing hash join... [4.7893s] Building seed filter... [0.120752s] Searching alignments... [71.1934s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.42983s] Building query seed array... [1.5096s] Computing hash join... [5.54712s] Building seed filter... [0.13653s] Searching alignments... [66.8788s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.2986s] Building query seed array... [1.80895s] Computing hash join... [5.23943s] Building seed filter... [0.128207s] Searching alignments... [57.6988s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.974s] Building query seed array... [1.80093s] Computing hash join... [5.72558s] Building seed filter... [0.078877s] Searching alignments... [66.0397s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.78587s] Building query seed array... [1.50292s] Computing hash join... [5.15523s] Building seed filter... [0.104272s] Searching alignments... [64.8932s] Deallocating buffers... [2.39523s] Opening temporary output file... [0.000684s] Computing alignments... [400.106s] Deallocating reference... [0.319624s] Loading reference sequences... [37.7636s] Masking reference... [58.4674s] Initializing temporary storage... [0.00632s] Building reference histograms... [12.1737s] Allocating buffers... [0.000203s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.16641s] Building query seed array... [1.5195s] Computing hash join... [6.77987s] Building seed filter... [0.101524s] Searching alignments... [119.148s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.085s] Building query seed array... [1.91039s] Computing hash join... [4.98747s] Building seed filter... [0.113977s] Searching alignments... [83.2062s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [11.9969s] Building query seed array... [1.92859s] Computing hash join... [6.19757s] Building seed filter... [0.095866s] Searching alignments... [75.6197s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.4823s] Building query seed array... [1.60302s] Computing hash join... [5.694s] Building seed filter... [0.110222s] Searching alignments... [74.1435s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.20953s] Building query seed array... [1.41244s] Computing hash join... [5.70504s] Building seed filter... [0.084251s] Searching alignments... [123.474s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.7342s] Building query seed array... [1.71267s] Computing hash join... [4.34948s] Building seed filter... [0.110315s] Searching alignments... [54.8662s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.1764s] Building query seed array... [1.67886s] Computing hash join... [4.30281s] Building seed filter... [0.101027s] Searching alignments... [54.5586s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.37227s] Building query seed array... [1.41213s] Computing hash join... [5.98836s] Building seed filter... [0.095661s] Searching alignments... [43.4112s] Deallocating buffers... [1.59514s] Opening temporary output file... [0.000651s] Computing alignments... [327.206s] Deallocating reference... [0.484933s] Loading reference sequences... [37.0624s] Masking reference... [58.6012s] Initializing temporary storage... [0.005606s] Building reference histograms... [12.5439s] Allocating buffers... [0.00019s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.99662s] Building query seed array... [1.46392s] Computing hash join... [6.19604s] Building seed filter... [0.11536s] Searching alignments... [83.109s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.0075s] Building query seed array... [1.86723s] Computing hash join... [5.79277s] Building seed filter... [0.086528s] Searching alignments... [67.8704s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.5823s] Building query seed array... [1.88552s] Computing hash join... [5.02808s] Building seed filter... [0.10871s] Searching alignments... [65.0409s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.81583s] Building query seed array... [1.5825s] Computing hash join... [5.15919s] Building seed filter... [0.109895s] Searching alignments... [50.3594s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.25618s] Building query seed array... [1.26059s] Computing hash join... [5.56556s] Building seed filter... [0.079308s] Searching alignments... [47.7312s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.3486s] Building query seed array... [1.63037s] Computing hash join... [5.00805s] Building seed filter... [0.09808s] Searching alignments... [39.5354s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.0995s] Building query seed array... [1.63029s] Computing hash join... [4.53483s] Building seed filter... [0.10099s] Searching alignments... [44.6794s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.12431s] Building query seed array... [1.31138s] Computing hash join... [4.98238s] Building seed filter... [0.086395s] Searching alignments... [43.87s] Deallocating buffers... [1.65894s] Opening temporary output file... [0.001477s] Computing alignments... [278.029s] Deallocating reference... [0.430961s] Loading reference sequences... [14.676s] Masking reference... [20.936s] Initializing temporary storage... [0.003975s] Building reference histograms... [4.61291s] Allocating buffers... [0.000186s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.36709s] Building query seed array... [1.41046s] Computing hash join... [1.84908s] Building seed filter... [0.061164s] Searching alignments... [40.7292s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.22765s] Building query seed array... [1.67056s] Computing hash join... [1.93535s] Building seed filter... [0.049601s] Searching alignments... [34.6978s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.28206s] Building query seed array... [1.71311s] Computing hash join... [1.90745s] Building seed filter... [0.058472s] Searching alignments... [28.6227s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28123s] Building query seed array... [1.36676s] Computing hash join... [1.8708s] Building seed filter... [0.054015s] Searching alignments... [22.8342s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.23496s] Building query seed array... [1.24073s] Computing hash join... [1.81043s] Building seed filter... [0.048768s] Searching alignments... [23.4232s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.16364s] Building query seed array... [1.53326s] Computing hash join... [1.79018s] Building seed filter... [0.047477s] Searching alignments... [19.8829s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.3001s] Building query seed array... [1.56929s] Computing hash join... [1.83392s] Building seed filter... [0.048162s] Searching alignments... [20.213s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.24482s] Building query seed array... [1.22399s] Computing hash join... [1.81767s] Building seed filter... [0.053827s] Searching alignments... [20.6757s] Deallocating buffers... [0.046182s] Opening temporary output file... [0.018441s] Computing alignments... [138.207s] Deallocating reference... [0.029943s] Loading reference sequences... [0.017421s] Deallocating buffers... [0.020622s] Joining output blocks... [203.798s] Deallocating queries... [0.027226s] Loading query sequences... [2.6e-05s] Closing the input file... [4.1e-05s] Closing the output file... [0.355579s] Closing the database file... [2.8e-05s] Deallocating taxonomy... [0.012496s] Total time = 7386.56s Reported 2479424172 pairwise alignments, 2479453416 HSPs. 4281823 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.071259s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.096112s] Opening the output file... [0.000437s] Loading query sequences... [56.1081s] Masking queries... [38.6325s] Building query seed set... [0.268715s] Algorithm: Double-indexed Building query histograms... [2.06137s] Allocating buffers... [0.000699s] Loading reference sequences... [373.722s] Masking reference... [57.9058s] Initializing temporary storage... [0.004523s] Building reference histograms... [12.6477s] Allocating buffers... [0.000193s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.01801s] Building query seed array... [1.2928s] Computing hash join... [7.33635s] Building seed filter... [0.056954s] Searching alignments... [170.675s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.1244s] Building query seed array... [2.00857s] Computing hash join... [4.88666s] Building seed filter... [0.071593s] Searching alignments... [129.652s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.3754s] Building query seed array... [1.81147s] Computing hash join... [5.69517s] Building seed filter... [0.07771s] Searching alignments... [107.844s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.4454s] Building query seed array... [1.53512s] Computing hash join... [5.6021s] Building seed filter... [0.043026s] Searching alignments... [136.658s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.40891s] Building query seed array... [1.30633s] Computing hash join... [4.11446s] Building seed filter... [0.044164s] Searching alignments... [215.997s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.8599s] Building query seed array... [1.61867s] Computing hash join... [5.74036s] Building seed filter... [0.068501s] Searching alignments... [87.9193s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.0465s] Building query seed array... [1.51632s] Computing hash join... [5.48976s] Building seed filter... [0.047912s] Searching alignments... [87.3791s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.3228s] Building query seed array... [1.38826s] Computing hash join... [5.24193s] Building seed filter... [0.062177s] Searching alignments... [76.4825s] Deallocating buffers... [1.7854s] Opening temporary output file... [0.000801s] Computing alignments... [580.062s] Deallocating reference... [0.557111s] Loading reference sequences... [355.649s] Masking reference... [58.3965s] Initializing temporary storage... [0.004428s] Building reference histograms... [12.9803s] Allocating buffers... [0.0002s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.07198s] Building query seed array... [1.43854s] Computing hash join... [5.46301s] Building seed filter... [0.073022s] Searching alignments... [124.793s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.7062s] Building query seed array... [1.72423s] Computing hash join... [5.44273s] Building seed filter... [0.047699s] Searching alignments... [122.948s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.22s] Building query seed array... [1.72519s] Computing hash join... [5.09754s] Building seed filter... [0.046735s] Searching alignments... [84.3077s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.41087s] Building query seed array... [1.47172s] Computing hash join... [5.54294s] Building seed filter... [0.054662s] Searching alignments... [71.4132s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.06853s] Building query seed array... [1.20858s] Computing hash join... [5.0738s] Building seed filter... [0.052686s] Searching alignments... [118.54s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.0777s] Building query seed array... [1.54823s] Computing hash join... [5.49952s] Building seed filter... [0.04265s] Searching alignments... [56.1857s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.957s] Building query seed array... [1.53378s] Computing hash join... [5.06052s] Building seed filter... [0.055732s] Searching alignments... [58.0157s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.96848s] Building query seed array... [1.20968s] Computing hash join... [5.13541s] Building seed filter... [0.040788s] Searching alignments... [62.4992s] Deallocating buffers... [1.37262s] Opening temporary output file... [0.001951s] Computing alignments... [406.616s] Deallocating reference... [0.073416s] Loading reference sequences... [353.398s] Masking reference... [57.2943s] Initializing temporary storage... [0.006095s] Building reference histograms... [12.8385s] Allocating buffers... [0.000207s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.07754s] Building query seed array... [1.30199s] Computing hash join... [7.16864s] Building seed filter... [0.046578s] Searching alignments... [157.417s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.2852s] Building query seed array... [1.60166s] Computing hash join... [4.66266s] Building seed filter... [0.043975s] Searching alignments... [138.465s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.2756s] Building query seed array... [1.60528s] Computing hash join... [5.99883s] Building seed filter... [0.050856s] Searching alignments... [121.269s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.79182s] Building query seed array... [1.33229s] Computing hash join... [5.64682s] Building seed filter... [0.04464s] Searching alignments... [132.796s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.50144s] Building query seed array... [1.35313s] Computing hash join... [3.81665s] Building seed filter... [0.063512s] Searching alignments... [89.8129s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.4876s] Building query seed array... [1.44268s] Computing hash join... [4.33763s] Building seed filter... [0.063152s] Searching alignments... [115.634s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.1401s] Building query seed array... [1.46284s] Computing hash join... [4.12374s] Building seed filter... [0.040718s] Searching alignments... [104.55s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.62297s] Building query seed array... [1.19006s] Computing hash join... [4.23936s] Building seed filter... [0.071743s] Searching alignments... [77.1486s] Deallocating buffers... [2.25492s] Opening temporary output file... [0.00212s] Computing alignments... [548.96s] Deallocating reference... [0.081484s] Loading reference sequences... [328.888s] Masking reference... [56.9973s] Initializing temporary storage... [0.00716s] Building reference histograms... [12.2308s] Allocating buffers... [0.000191s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.10181s] Building query seed array... [1.33843s] Computing hash join... [6.33226s] Building seed filter... [0.087135s] Searching alignments... [151.211s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [13.2981s] Building query seed array... [1.59285s] Computing hash join... [4.3936s] Building seed filter... [0.059412s] Searching alignments... [134.523s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.2106s] Building query seed array... [1.65579s] Computing hash join... [5.82812s] Building seed filter... [0.049871s] Searching alignments... [95.7142s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.86411s] Building query seed array... [1.35389s] Computing hash join... [5.17739s] Building seed filter... [0.082375s] Searching alignments... [106.249s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.30548s] Building query seed array... [1.24767s] Computing hash join... [5.86336s] Building seed filter... [0.054022s] Searching alignments... [125.384s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.1432s] Building query seed array... [1.43787s] Computing hash join... [4.25059s] Building seed filter... [0.062105s] Searching alignments... [74.743s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.4129s] Building query seed array... [1.45033s] Computing hash join... [5.75865s] Building seed filter... [0.060455s] Searching alignments... [118.695s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.70609s] Building query seed array... [1.22158s] Computing hash join... [5.09561s] Building seed filter... [0.075679s] Searching alignments... [60.6937s] Deallocating buffers... [2.14183s] Opening temporary output file... [0.001775s] Computing alignments... [478.741s] Deallocating reference... [0.082345s] Loading reference sequences... [326.496s] Masking reference... [57.2792s] Initializing temporary storage... [0.006756s] Building reference histograms... [13.3094s] Allocating buffers... [0.000207s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.0496s] Building query seed array... [1.28114s] Computing hash join... [6.18848s] Building seed filter... [0.093224s] Searching alignments... [126.502s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [13.1883s] Building query seed array... [1.63226s] Computing hash join... [5.39518s] Building seed filter... [0.089987s] Searching alignments... [90.2316s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.8995s] Building query seed array... [1.68581s] Computing hash join... [4.49024s] Building seed filter... [0.059839s] Searching alignments... [76.0478s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [10.0867s] Building query seed array... [1.3362s] Computing hash join... [4.49775s] Building seed filter... [0.054957s] Searching alignments... [95.8052s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.43948s] Building query seed array... [1.22343s] Computing hash join... [4.32898s] Building seed filter... [0.06011s] Searching alignments... [99.2237s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.1274s] Building query seed array... [1.47212s] Computing hash join... [4.70085s] Building seed filter... [0.057002s] Searching alignments... [100.991s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.9892s] Building query seed array... [1.45738s] Computing hash join... [4.12095s] Building seed filter... [0.065673s] Searching alignments... [83.8383s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.19745s] Building query seed array... [1.27257s] Computing hash join... [3.96582s] Building seed filter... [0.053947s] Searching alignments... [49.5112s] Deallocating buffers... [2.15013s] Opening temporary output file... [0.000787s] Computing alignments... [397.584s] Deallocating reference... [0.397115s] Loading reference sequences... [15.4133s] Masking reference... [21.5408s] Initializing temporary storage... [0.003761s] Building reference histograms... [4.54475s] Allocating buffers... [0.000202s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.27291s] Building query seed array... [1.27854s] Computing hash join... [1.73205s] Building seed filter... [0.02994s] Searching alignments... [47.7624s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.36746s] Building query seed array... [1.54094s] Computing hash join... [1.76942s] Building seed filter... [0.0274s] Searching alignments... [51.2352s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31855s] Building query seed array... [1.52931s] Computing hash join... [1.72514s] Building seed filter... [0.031477s] Searching alignments... [44.9569s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26971s] Building query seed array... [1.24221s] Computing hash join... [1.8062s] Building seed filter... [0.031358s] Searching alignments... [29.1877s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.40045s] Building query seed array... [1.14129s] Computing hash join... [1.68134s] Building seed filter... [0.027639s] Searching alignments... [74.6128s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.17321s] Building query seed array... [1.36977s] Computing hash join... [1.71969s] Building seed filter... [0.029138s] Searching alignments... [43.5906s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.2585s] Building query seed array... [1.36708s] Computing hash join... [1.64773s] Building seed filter... [0.027525s] Searching alignments... [39.6077s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.25402s] Building query seed array... [1.13603s] Computing hash join... [1.66146s] Building seed filter... [0.027597s] Searching alignments... [27.8847s] Deallocating buffers... [0.051407s] Opening temporary output file... [0.017075s] Computing alignments... [205.205s] Deallocating reference... [0.029477s] Loading reference sequences... [0.032034s] Deallocating buffers... [0.016985s] Joining output blocks... [525.612s] Deallocating queries... [0.039483s] Loading query sequences... [3.8e-05s] Closing the input file... [5.9e-05s] Closing the output file... [0.424969s] Closing the database file... [3.7e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 10736.9s Reported 3080599865 pairwise alignments, 3080648746 HSPs. 5052112 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.104261s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.095411s] Opening the output file... [0.000441s] Loading query sequences... [55.6836s] Masking queries... [57.714s] Building query seed set... [0.276163s] Algorithm: Double-indexed Building query histograms... [2.11607s] Allocating buffers... [0.000724s] Loading reference sequences... [366.399s] Masking reference... [58.0793s] Initializing temporary storage... [0.004335s] Building reference histograms... [13.1163s] Allocating buffers... [0.000197s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.09393s] Building query seed array... [1.38469s] Computing hash join... [6.71272s] Building seed filter... [0.057591s] Searching alignments... [155.426s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.4496s] Building query seed array... [2.06343s] Computing hash join... [5.9525s] Building seed filter... [0.051246s] Searching alignments... [160.26s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.4071s] Building query seed array... [1.80693s] Computing hash join... [5.65794s] Building seed filter... [0.050768s] Searching alignments... [111.251s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.33842s] Building query seed array... [1.61644s] Computing hash join... [5.83868s] Building seed filter... [0.059807s] Searching alignments... [121.096s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.45063s] Building query seed array... [1.39611s] Computing hash join... [4.24626s] Building seed filter... [0.046327s] Searching alignments... [266.009s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.9889s] Building query seed array... [1.61606s] Computing hash join... [5.34711s] Building seed filter... [0.068133s] Searching alignments... [72.9854s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.1684s] Building query seed array... [1.6946s] Computing hash join... [5.18881s] Building seed filter... [0.058434s] Searching alignments... [89.1987s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.15835s] Building query seed array... [1.36434s] Computing hash join... [5.38449s] Building seed filter... [0.046429s] Searching alignments... [83.6255s] Deallocating buffers... [1.82261s] Opening temporary output file... [0.000733s] Computing alignments... [587.797s] Deallocating reference... [0.536946s] Loading reference sequences... [357.585s] Masking reference... [57.273s] Initializing temporary storage... [0.004522s] Building reference histograms... [12.7261s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.09569s] Building query seed array... [1.44841s] Computing hash join... [7.46004s] Building seed filter... [0.058496s] Searching alignments... [110.511s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [11.7939s] Building query seed array... [1.71582s] Computing hash join... [5.59383s] Building seed filter... [0.047825s] Searching alignments... [102.681s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [13.3202s] Building query seed array... [1.77785s] Computing hash join... [4.43035s] Building seed filter... [0.064727s] Searching alignments... [86.3714s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [10.5436s] Building query seed array... [1.50622s] Computing hash join... [4.53916s] Building seed filter... [0.047518s] Searching alignments... [64.5216s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.66897s] Building query seed array... [1.49904s] Computing hash join... [5.51977s] Building seed filter... [0.045199s] Searching alignments... [135.832s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.1981s] Building query seed array... [1.51329s] Computing hash join... [5.54223s] Building seed filter... [0.057807s] Searching alignments... [58.1377s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.4045s] Building query seed array... [1.55233s] Computing hash join... [4.7505s] Building seed filter... [0.050528s] Searching alignments... [56.4474s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.51536s] Building query seed array... [1.26439s] Computing hash join... [5.55156s] Building seed filter... [0.060386s] Searching alignments... [57.4054s] Deallocating buffers... [2.31971s] Opening temporary output file... [0.001748s] Computing alignments... [394.542s] Deallocating reference... [0.493869s] Loading reference sequences... [351.135s] Masking reference... [57.5575s] Initializing temporary storage... [0.005657s] Building reference histograms... [12.8206s] Allocating buffers... [0.000208s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.02969s] Building query seed array... [1.39149s] Computing hash join... [6.25384s] Building seed filter... [0.048215s] Searching alignments... [141.791s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.7299s] Building query seed array... [1.65377s] Computing hash join... [4.46237s] Building seed filter... [0.060822s] Searching alignments... [136.505s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.2813s] Building query seed array... [1.67143s] Computing hash join... [5.33186s] Building seed filter... [0.098132s] Searching alignments... [102.993s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.74004s] Building query seed array... [1.39675s] Computing hash join... [5.37118s] Building seed filter... [0.087072s] Searching alignments... [116.872s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.41539s] Building query seed array... [1.21467s] Computing hash join... [5.86034s] Building seed filter... [0.048709s] Searching alignments... [87.1884s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.06s] Building query seed array... [1.4559s] Computing hash join... [4.58254s] Building seed filter... [0.068503s] Searching alignments... [73.7925s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.3385s] Building query seed array... [1.47016s] Computing hash join... [5.883s] Building seed filter... [0.04186s] Searching alignments... [83.757s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.53273s] Building query seed array... [1.26599s] Computing hash join... [5.06379s] Building seed filter... [0.078715s] Searching alignments... [69.7714s] Deallocating buffers... [1.90333s] Opening temporary output file... [0.000656s] Computing alignments... [524.763s] Deallocating reference... [0.319161s] Loading reference sequences... [331.83s] Masking reference... [57.1437s] Initializing temporary storage... [0.004624s] Building reference histograms... [12.7318s] Allocating buffers... [0.000192s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.2966s] Building query seed array... [1.3635s] Computing hash join... [7.72534s] Building seed filter... [0.060585s] Searching alignments... [163.592s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.3659s] Building query seed array... [1.63484s] Computing hash join... [4.6745s] Building seed filter... [0.070283s] Searching alignments... [120.91s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.6047s] Building query seed array... [1.6522s] Computing hash join... [4.64328s] Building seed filter... [0.04475s] Searching alignments... [98.8957s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.42033s] Building query seed array... [1.34732s] Computing hash join... [3.99749s] Building seed filter... [0.048129s] Searching alignments... [96.6988s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.99292s] Building query seed array... [1.21652s] Computing hash join... [4.53688s] Building seed filter... [0.068465s] Searching alignments... [141.217s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.9717s] Building query seed array... [1.48781s] Computing hash join... [4.475s] Building seed filter... [0.056595s] Searching alignments... [101.848s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.624s] Building query seed array... [1.48062s] Computing hash join... [4.51175s] Building seed filter... [0.041615s] Searching alignments... [133.411s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.84517s] Building query seed array... [1.27683s] Computing hash join... [4.28072s] Building seed filter... [0.05263s] Searching alignments... [86.909s] Deallocating buffers... [2.30588s] Opening temporary output file... [0.000619s] Computing alignments... [477.627s] Deallocating reference... [0.463911s] Loading reference sequences... [316.109s] Masking reference... [57.8034s] Initializing temporary storage... [0.005432s] Building reference histograms... [12.9463s] Allocating buffers... [0.000193s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.03713s] Building query seed array... [1.29087s] Computing hash join... [6.80602s] Building seed filter... [0.06084s] Searching alignments... [124.448s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.6764s] Building query seed array... [1.62762s] Computing hash join... [6.52536s] Building seed filter... [0.058538s] Searching alignments... [92.9886s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.0884s] Building query seed array... [1.66934s] Computing hash join... [7.158s] Building seed filter... [0.053429s] Searching alignments... [100.855s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.44901s] Building query seed array... [1.42778s] Computing hash join... [7.40946s] Building seed filter... [0.064941s] Searching alignments... [84.9794s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.063s] Building query seed array... [1.15841s] Computing hash join... [6.76953s] Building seed filter... [0.05708s] Searching alignments... [114.354s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.4959s] Building query seed array... [1.37547s] Computing hash join... [6.95651s] Building seed filter... [0.070309s] Searching alignments... [85.1892s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.7302s] Building query seed array... [1.46496s] Computing hash join... [7.39904s] Building seed filter... [0.064443s] Searching alignments... [80.1023s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.02812s] Building query seed array... [1.14843s] Computing hash join... [6.82238s] Building seed filter... [0.070975s] Searching alignments... [51.0892s] Deallocating buffers... [0.991497s] Opening temporary output file... [0.000642s] Computing alignments... [379.966s] Deallocating reference... [0.062962s] Loading reference sequences... [138.981s] Masking reference... [21.1448s] Initializing temporary storage... [0.005516s] Building reference histograms... [4.76773s] Allocating buffers... [0.000187s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.32593s] Building query seed array... [1.28958s] Computing hash join... [1.75645s] Building seed filter... [0.033925s] Searching alignments... [50.5222s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23964s] Building query seed array... [1.52898s] Computing hash join... [1.78706s] Building seed filter... [0.030012s] Searching alignments... [53.3351s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.29943s] Building query seed array... [1.58417s] Computing hash join... [1.76415s] Building seed filter... [0.036242s] Searching alignments... [33.868s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.27747s] Building query seed array... [1.27419s] Computing hash join... [1.77536s] Building seed filter... [0.03389s] Searching alignments... [43.9777s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.32038s] Building query seed array... [1.1759s] Computing hash join... [1.69244s] Building seed filter... [0.02763s] Searching alignments... [87.7s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.15676s] Building query seed array... [1.40609s] Computing hash join... [1.69503s] Building seed filter... [0.027483s] Searching alignments... [25.7964s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.33747s] Building query seed array... [1.40163s] Computing hash join... [1.65327s] Building seed filter... [0.028176s] Searching alignments... [29.8761s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23298s] Building query seed array... [1.13424s] Computing hash join... [1.66506s] Building seed filter... [0.028842s] Searching alignments... [28.4895s] Deallocating buffers... [0.046078s] Opening temporary output file... [0.049407s] Computing alignments... [202.116s] Deallocating reference... [0.028859s] Loading reference sequences... [0.078246s] Deallocating buffers... [0.027833s] Joining output blocks... [369.588s] Deallocating queries... [0.028769s] Loading query sequences... [3.2e-05s] Closing the input file... [4.8e-05s] Closing the output file... [0.389459s] Closing the database file... [5.5e-05s] Deallocating taxonomy... [2.4e-05s] Total time = 10655.8s Reported 2827963882 pairwise alignments, 2828004358 HSPs. 4793478 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.067316s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.081444s] Opening the output file... [0.000427s] Loading query sequences... [49.9513s] Masking queries... [52.3128s] Building query seed set... [0.262456s] Algorithm: Double-indexed Building query histograms... [1.85525s] Allocating buffers... [0.000791s] Loading reference sequences... [370.599s] Masking reference... [58.4159s] Initializing temporary storage... [0.004691s] Building reference histograms... [12.3294s] Allocating buffers... [0.000198s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.05038s] Building query seed array... [1.14002s] Computing hash join... [7.02436s] Building seed filter... [0.045294s] Searching alignments... [140.6s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.9715s] Building query seed array... [1.74371s] Computing hash join... [4.09279s] Building seed filter... [0.086099s] Searching alignments... [177.363s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.4603s] Building query seed array... [1.53978s] Computing hash join... [5.50785s] Building seed filter... [0.070983s] Searching alignments... [95.0205s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.34378s] Building query seed array... [1.40836s] Computing hash join... [3.94322s] Building seed filter... [0.078704s] Searching alignments... [122.929s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.19867s] Building query seed array... [1.1664s] Computing hash join... [4.00271s] Building seed filter... [0.061038s] Searching alignments... [191.302s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [12.0865s] Building query seed array... [1.44218s] Computing hash join... [4.17275s] Building seed filter... [0.054045s] Searching alignments... [76.0301s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.0115s] Building query seed array... [1.41763s] Computing hash join... [4.13015s] Building seed filter... [0.046673s] Searching alignments... [74.5192s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.44046s] Building query seed array... [1.25086s] Computing hash join... [4.38283s] Building seed filter... [0.046005s] Searching alignments... [65.9022s] Deallocating buffers... [1.61078s] Opening temporary output file... [0.000744s] Computing alignments... [538.624s] Deallocating reference... [0.235558s] Loading reference sequences... [349.661s] Masking reference... [57.3022s] Initializing temporary storage... [0.005488s] Building reference histograms... [12.3815s] Allocating buffers... [0.00021s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.12645s] Building query seed array... [1.32101s] Computing hash join... [7.41892s] Building seed filter... [0.055793s] Searching alignments... [106.95s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.1262s] Building query seed array... [1.61078s] Computing hash join... [3.89544s] Building seed filter... [0.046291s] Searching alignments... [110.489s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.7558s] Building query seed array... [1.66074s] Computing hash join... [5.51068s] Building seed filter... [0.051322s] Searching alignments... [73.3589s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [10.1118s] Building query seed array... [1.4214s] Computing hash join... [4.55709s] Building seed filter... [0.056632s] Searching alignments... [61.484s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.60828s] Building query seed array... [1.26802s] Computing hash join... [3.82013s] Building seed filter... [0.040291s] Searching alignments... [85.3761s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.2189s] Building query seed array... [1.46266s] Computing hash join... [3.79039s] Building seed filter... [0.041696s] Searching alignments... [47.8262s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.2901s] Building query seed array... [1.39602s] Computing hash join... [4.23534s] Building seed filter... [0.058s] Searching alignments... [50.7161s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.49672s] Building query seed array... [1.15744s] Computing hash join... [4.21076s] Building seed filter... [0.047915s] Searching alignments... [54.7651s] Deallocating buffers... [2.38509s] Opening temporary output file... [0.000752s] Computing alignments... [362.623s] Deallocating reference... [0.520858s] Loading reference sequences... [349.184s] Masking reference... [57.3039s] Initializing temporary storage... [0.005606s] Building reference histograms... [13.1976s] Allocating buffers... [0.000218s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.07846s] Building query seed array... [1.32694s] Computing hash join... [6.23129s] Building seed filter... [0.078371s] Searching alignments... [137.246s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [13.3667s] Building query seed array... [1.60202s] Computing hash join... [4.27588s] Building seed filter... [0.044947s] Searching alignments... [116.681s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.3307s] Building query seed array... [1.64338s] Computing hash join... [4.40021s] Building seed filter... [0.054598s] Searching alignments... [104.523s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.35697s] Building query seed array... [1.38691s] Computing hash join... [5.9674s] Building seed filter... [0.048294s] Searching alignments... [121.613s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.81165s] Building query seed array... [1.18761s] Computing hash join... [3.73934s] Building seed filter... [0.062074s] Searching alignments... [180.967s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.9386s] Building query seed array... [1.48816s] Computing hash join... [4.38129s] Building seed filter... [0.045032s] Searching alignments... [88.3354s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [11.8507s] Building query seed array... [1.4685s] Computing hash join... [3.77467s] Building seed filter... [0.051543s] Searching alignments... [89.822s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.74034s] Building query seed array... [1.16632s] Computing hash join... [4.70754s] Building seed filter... [0.041448s] Searching alignments... [94.2198s] Deallocating buffers... [2.24256s] Opening temporary output file... [0.001711s] Computing alignments... [505.247s] Deallocating reference... [0.565297s] Loading reference sequences... [320.081s] Masking reference... [57.2379s] Initializing temporary storage... [0.005761s] Building reference histograms... [12.4132s] Allocating buffers... [0.000182s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.21033s] Building query seed array... [1.35194s] Computing hash join... [6.32901s] Building seed filter... [0.06415s] Searching alignments... [134.329s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.7831s] Building query seed array... [1.59623s] Computing hash join... [5.36948s] Building seed filter... [0.089482s] Searching alignments... [117.231s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.2341s] Building query seed array... [1.60099s] Computing hash join... [6.14568s] Building seed filter... [0.059197s] Searching alignments... [83.1308s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.84551s] Building query seed array... [1.41672s] Computing hash join... [5.80951s] Building seed filter... [0.050901s] Searching alignments... [93.7891s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.54884s] Building query seed array... [1.25266s] Computing hash join... [5.19124s] Building seed filter... [0.046471s] Searching alignments... [111.318s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.9408s] Building query seed array... [1.45423s] Computing hash join... [4.94311s] Building seed filter... [0.067184s] Searching alignments... [67.4045s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.4766s] Building query seed array... [1.45693s] Computing hash join... [4.19584s] Building seed filter... [0.054731s] Searching alignments... [106.888s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.49868s] Building query seed array... [1.2314s] Computing hash join... [4.43266s] Building seed filter... [0.047094s] Searching alignments... [54.5126s] Deallocating buffers... [2.22287s] Opening temporary output file... [0.000679s] Computing alignments... [418.153s] Deallocating reference... [0.477886s] Loading reference sequences... [310.899s] Masking reference... [59.1483s] Initializing temporary storage... [0.004629s] Building reference histograms... [13.0921s] Allocating buffers... [0.000174s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.92192s] Building query seed array... [1.36075s] Computing hash join... [4.60686s] Building seed filter... [0.053399s] Searching alignments... [108.509s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [13.0691s] Building query seed array... [1.66168s] Computing hash join... [4.2219s] Building seed filter... [0.050421s] Searching alignments... [90.0314s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.3219s] Building query seed array... [1.64032s] Computing hash join... [4.53729s] Building seed filter... [0.050906s] Searching alignments... [67.0627s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.3466s] Building query seed array... [1.38083s] Computing hash join... [4.62471s] Building seed filter... [0.048312s] Searching alignments... [85.4068s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.04634s] Building query seed array... [1.24431s] Computing hash join... [4.43519s] Building seed filter... [0.044239s] Searching alignments... [89.8066s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.4694s] Building query seed array... [1.31003s] Computing hash join... [4.54459s] Building seed filter... [0.046929s] Searching alignments... [88.7402s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.731s] Building query seed array... [1.42523s] Computing hash join... [4.74161s] Building seed filter... [0.066187s] Searching alignments... [74.1841s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.14596s] Building query seed array... [1.23322s] Computing hash join... [4.9839s] Building seed filter... [0.059757s] Searching alignments... [60.7647s] Deallocating buffers... [1.1278s] Opening temporary output file... [0.000792s] Computing alignments... [356.456s] Deallocating reference... [0.080421s] Loading reference sequences... [15.6038s] Masking reference... [21.2594s] Initializing temporary storage... [0.004131s] Building reference histograms... [4.66766s] Allocating buffers... [0.000204s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.30604s] Building query seed array... [1.30245s] Computing hash join... [1.64436s] Building seed filter... [0.034547s] Searching alignments... [41.2638s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.24468s] Building query seed array... [1.51325s] Computing hash join... [1.68559s] Building seed filter... [0.029392s] Searching alignments... [43.8356s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.2865s] Building query seed array... [1.47169s] Computing hash join... [1.67551s] Building seed filter... [0.027509s] Searching alignments... [39.3717s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25392s] Building query seed array... [1.33357s] Computing hash join... [1.67709s] Building seed filter... [0.028912s] Searching alignments... [46.6762s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.33476s] Building query seed array... [1.12922s] Computing hash join... [1.59548s] Building seed filter... [0.024764s] Searching alignments... [67.9397s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.19023s] Building query seed array... [1.3785s] Computing hash join... [1.59615s] Building seed filter... [0.025963s] Searching alignments... [30.8184s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.29187s] Building query seed array... [1.35735s] Computing hash join... [1.61791s] Building seed filter... [0.025434s] Searching alignments... [33.3532s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21654s] Building query seed array... [1.20874s] Computing hash join... [1.59979s] Building seed filter... [0.028273s] Searching alignments... [36.1165s] Deallocating buffers... [0.047315s] Opening temporary output file... [0.015189s] Computing alignments... [187.214s] Deallocating reference... [0.038053s] Loading reference sequences... [0.012043s] Deallocating buffers... [0.367252s] Joining output blocks... [551.483s] Deallocating queries... [0.038559s] Loading query sequences... [4.3e-05s] Closing the input file... [6.8e-05s] Closing the output file... [0.289028s] Closing the database file... [3.4e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 10109.7s Reported 2825883812 pairwise alignments, 2825925790 HSPs. 4438470 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.086727s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.067645s] Opening the output file... [0.000409s] Loading query sequences... [50.3908s] Masking queries... [31.6176s] Building query seed set... [0.257552s] Algorithm: Double-indexed Building query histograms... [1.86749s] Allocating buffers... [0.000722s] Loading reference sequences... [373.768s] Masking reference... [58.4594s] Initializing temporary storage... [0.004969s] Building reference histograms... [12.984s] Allocating buffers... [0.000203s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.04168s] Building query seed array... [1.16866s] Computing hash join... [6.42499s] Building seed filter... [0.049101s] Searching alignments... [131.419s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.1025s] Building query seed array... [1.77326s] Computing hash join... [4.12739s] Building seed filter... [0.077769s] Searching alignments... [142.357s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.5904s] Building query seed array... [1.57152s] Computing hash join... [5.5774s] Building seed filter... [0.054561s] Searching alignments... [96.7268s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.43927s] Building query seed array... [1.32565s] Computing hash join... [5.73666s] Building seed filter... [0.052999s] Searching alignments... [104.405s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.07446s] Building query seed array... [1.17702s] Computing hash join... [4.3318s] Building seed filter... [0.069118s] Searching alignments... [228.919s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.8688s] Building query seed array... [1.42701s] Computing hash join... [5.41566s] Building seed filter... [0.05863s] Searching alignments... [63.9274s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.039s] Building query seed array... [1.45528s] Computing hash join... [4.94022s] Building seed filter... [0.060388s] Searching alignments... [78.2494s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.2207s] Building query seed array... [1.1616s] Computing hash join... [5.40767s] Building seed filter... [0.062784s] Searching alignments... [72.3431s] Deallocating buffers... [1.56745s] Opening temporary output file... [0.000806s] Computing alignments... [512.163s] Deallocating reference... [0.525654s] Loading reference sequences... [355.542s] Masking reference... [57.2888s] Initializing temporary storage... [0.005374s] Building reference histograms... [11.9641s] Allocating buffers... [0.000215s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.46181s] Building query seed array... [1.35773s] Computing hash join... [6.9386s] Building seed filter... [0.064602s] Searching alignments... [98.7458s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.7221s] Building query seed array... [1.61778s] Computing hash join... [5.05082s] Building seed filter... [0.043613s] Searching alignments... [88.1245s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.6575s] Building query seed array... [1.63466s] Computing hash join... [4.61349s] Building seed filter... [0.048897s] Searching alignments... [74.9527s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.91348s] Building query seed array... [1.4099s] Computing hash join... [5.54638s] Building seed filter... [0.046962s] Searching alignments... [56.0017s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.51671s] Building query seed array... [1.20685s] Computing hash join... [5.96532s] Building seed filter... [0.044331s] Searching alignments... [111.726s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.6467s] Building query seed array... [1.45347s] Computing hash join... [3.88174s] Building seed filter... [0.04811s] Searching alignments... [51.0291s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.3342s] Building query seed array... [1.39692s] Computing hash join... [5.15494s] Building seed filter... [0.048963s] Searching alignments... [48.75s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.68955s] Building query seed array... [1.23435s] Computing hash join... [5.18369s] Building seed filter... [0.062404s] Searching alignments... [50.388s] Deallocating buffers... [2.00801s] Opening temporary output file... [0.000766s] Computing alignments... [346.496s] Deallocating reference... [0.471417s] Loading reference sequences... [348.019s] Masking reference... [57.1527s] Initializing temporary storage... [0.004452s] Building reference histograms... [12.7039s] Allocating buffers... [0.000187s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.05042s] Building query seed array... [1.26702s] Computing hash join... [6.55868s] Building seed filter... [0.063118s] Searching alignments... [124.041s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.7831s] Building query seed array... [1.60111s] Computing hash join... [5.81704s] Building seed filter... [0.049579s] Searching alignments... [119.825s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.5131s] Building query seed array... [1.62981s] Computing hash join... [4.47037s] Building seed filter... [0.053159s] Searching alignments... [87.6072s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.83405s] Building query seed array... [1.37143s] Computing hash join... [4.20832s] Building seed filter... [0.072187s] Searching alignments... [91.0763s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.56396s] Building query seed array... [1.2362s] Computing hash join... [5.48043s] Building seed filter... [0.05683s] Searching alignments... [76.6097s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.9968s] Building query seed array... [1.42166s] Computing hash join... [5.74138s] Building seed filter... [0.053332s] Searching alignments... [66.7395s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.3065s] Building query seed array... [1.46907s] Computing hash join... [4.14381s] Building seed filter... [0.065552s] Searching alignments... [73.4471s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.46475s] Building query seed array... [1.24579s] Computing hash join... [4.54011s] Building seed filter... [0.082916s] Searching alignments... [59.2496s] Deallocating buffers... [2.08104s] Opening temporary output file... [0.00085s] Computing alignments... [463.602s] Deallocating reference... [0.542826s] Loading reference sequences... [331.167s] Masking reference... [57.2894s] Initializing temporary storage... [0.005316s] Building reference histograms... [12.2164s] Allocating buffers... [0.000207s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.5493s] Building query seed array... [1.40648s] Computing hash join... [6.16583s] Building seed filter... [0.078538s] Searching alignments... [137.035s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.9789s] Building query seed array... [1.60977s] Computing hash join... [5.92501s] Building seed filter... [0.053006s] Searching alignments... [105.937s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.6442s] Building query seed array... [1.63363s] Computing hash join... [5.38604s] Building seed filter... [0.054129s] Searching alignments... [84.6094s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [10.0351s] Building query seed array... [1.38677s] Computing hash join... [4.86852s] Building seed filter... [0.047795s] Searching alignments... [85.1376s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.48308s] Building query seed array... [1.1965s] Computing hash join... [4.45938s] Building seed filter... [0.048738s] Searching alignments... [124.332s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.0482s] Building query seed array... [1.36913s] Computing hash join... [4.50589s] Building seed filter... [0.045876s] Searching alignments... [88.2146s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.0913s] Building query seed array... [1.46853s] Computing hash join... [4.24794s] Building seed filter... [0.047954s] Searching alignments... [117.511s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.37662s] Building query seed array... [1.22018s] Computing hash join... [4.28967s] Building seed filter... [0.049326s] Searching alignments... [76.549s] Deallocating buffers... [2.14486s] Opening temporary output file... [0.00073s] Computing alignments... [418.241s] Deallocating reference... [0.464378s] Loading reference sequences... [320.447s] Masking reference... [57.1941s] Initializing temporary storage... [0.004696s] Building reference histograms... [12.6546s] Allocating buffers... [0.000198s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.03064s] Building query seed array... [1.32214s] Computing hash join... [6.10963s] Building seed filter... [0.081148s] Searching alignments... [108s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.759s] Building query seed array... [1.56174s] Computing hash join... [6.29097s] Building seed filter... [0.047425s] Searching alignments... [79.7511s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.6261s] Building query seed array... [1.59677s] Computing hash join... [4.29138s] Building seed filter... [0.066305s] Searching alignments... [84.0326s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.62146s] Building query seed array... [1.30543s] Computing hash join... [5.68613s] Building seed filter... [0.051274s] Searching alignments... [72.7553s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.48513s] Building query seed array... [1.2294s] Computing hash join... [5.84085s] Building seed filter... [0.04859s] Searching alignments... [101.991s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.7863s] Building query seed array... [1.39601s] Computing hash join... [4.35751s] Building seed filter... [0.049771s] Searching alignments... [70.6667s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.2118s] Building query seed array... [1.36869s] Computing hash join... [3.91342s] Building seed filter... [0.06314s] Searching alignments... [64.3391s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.48236s] Building query seed array... [1.1126s] Computing hash join... [4.61819s] Building seed filter... [0.06289s] Searching alignments... [43.9101s] Deallocating buffers... [2.14117s] Opening temporary output file... [0.000662s] Computing alignments... [335.96s] Deallocating reference... [0.384024s] Loading reference sequences... [21.4128s] Masking reference... [21.2121s] Initializing temporary storage... [0.005044s] Building reference histograms... [4.6824s] Allocating buffers... [0.00017s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.30059s] Building query seed array... [1.22339s] Computing hash join... [1.72s] Building seed filter... [0.030933s] Searching alignments... [44.3785s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21603s] Building query seed array... [1.41828s] Computing hash join... [1.69789s] Building seed filter... [0.03001s] Searching alignments... [47.3467s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.29293s] Building query seed array... [1.45911s] Computing hash join... [1.75485s] Building seed filter... [0.028854s] Searching alignments... [28.7863s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.3074s] Building query seed array... [1.19271s] Computing hash join... [1.68852s] Building seed filter... [0.030338s] Searching alignments... [38.0708s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.29971s] Building query seed array... [1.05527s] Computing hash join... [1.6161s] Building seed filter... [0.025292s] Searching alignments... [77.4915s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.29601s] Building query seed array... [1.25582s] Computing hash join... [1.64485s] Building seed filter... [0.030228s] Searching alignments... [21.9998s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.24355s] Building query seed array... [1.28737s] Computing hash join... [1.6395s] Building seed filter... [0.026701s] Searching alignments... [26.1268s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23124s] Building query seed array... [1.03706s] Computing hash join... [1.60464s] Building seed filter... [0.028367s] Searching alignments... [24.8041s] Deallocating buffers... [0.051643s] Opening temporary output file... [0.017603s] Computing alignments... [178.823s] Deallocating reference... [0.029085s] Loading reference sequences... [0.026476s] Deallocating buffers... [0.060494s] Joining output blocks... [317.121s] Deallocating queries... [0.02752s] Loading query sequences... [3.4e-05s] Closing the input file... [4.9e-05s] Closing the output file... [0.435214s] Closing the database file... [3e-05s] Deallocating taxonomy... [9e-06s] Total time = 9499.81s Reported 2461207623 pairwise alignments, 2461241838 HSPs. 4179934 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.051989s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.099848s] Opening the output file... [0.001074s] Loading query sequences... [65.7123s] Masking queries... [45.6021s] Building query seed set... [0.2868s] Algorithm: Double-indexed Building query histograms... [2.53261s] Allocating buffers... [0.000719s] Loading reference sequences... [42.8233s] Masking reference... [58.3611s] Initializing temporary storage... [0.00437s] Building reference histograms... [12.0891s] Allocating buffers... [0.000157s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.02403s] Building query seed array... [1.59144s] Computing hash join... [5.06943s] Building seed filter... [0.093474s] Searching alignments... [144.232s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.3819s] Building query seed array... [2.36856s] Computing hash join... [5.75396s] Building seed filter... [0.081858s] Searching alignments... [111.511s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.8529s] Building query seed array... [2.11673s] Computing hash join... [4.87082s] Building seed filter... [0.082932s] Searching alignments... [93.9735s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.05994s] Building query seed array... [1.80687s] Computing hash join... [5.30089s] Building seed filter... [0.093157s] Searching alignments... [91.3939s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.89297s] Building query seed array... [1.60153s] Computing hash join... [5.16507s] Building seed filter... [0.115496s] Searching alignments... [76.268s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.5256s] Building query seed array... [1.81093s] Computing hash join... [4.81396s] Building seed filter... [0.098501s] Searching alignments... [83.8984s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.697s] Building query seed array... [1.91981s] Computing hash join... [4.97227s] Building seed filter... [0.085289s] Searching alignments... [74.8092s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.91784s] Building query seed array... [1.56522s] Computing hash join... [5.60885s] Building seed filter... [0.087371s] Searching alignments... [68.4629s] Deallocating buffers... [0.81217s] Opening temporary output file... [0.000817s] Computing alignments... [463.714s] Deallocating reference... [0.345586s] Loading reference sequences... [360.147s] Masking reference... [57.3137s] Initializing temporary storage... [0.006727s] Building reference histograms... [13.1818s] Allocating buffers... [0.000188s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [8.99416s] Building query seed array... [1.70718s] Computing hash join... [7.14387s] Building seed filter... [0.103106s] Searching alignments... [109.568s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.2276s] Building query seed array... [2.18642s] Computing hash join... [5.70944s] Building seed filter... [0.088896s] Searching alignments... [78.8154s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.5756s] Building query seed array... [2.26194s] Computing hash join... [4.81096s] Building seed filter... [0.097779s] Searching alignments... [70.1789s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.68172s] Building query seed array... [1.85025s] Computing hash join... [4.70764s] Building seed filter... [0.127143s] Searching alignments... [74.5628s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.83029s] Building query seed array... [1.64425s] Computing hash join... [5.44343s] Building seed filter... [0.114596s] Searching alignments... [69.6387s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.2266s] Building query seed array... [1.94598s] Computing hash join... [6.10085s] Building seed filter... [0.081887s] Searching alignments... [55.1817s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.3834s] Building query seed array... [1.95848s] Computing hash join... [5.08398s] Building seed filter... [0.102026s] Searching alignments... [51.7635s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.34386s] Building query seed array... [1.68312s] Computing hash join... [5.53509s] Building seed filter... [0.103742s] Searching alignments... [46.9537s] Deallocating buffers... [2.17511s] Opening temporary output file... [0.000675s] Computing alignments... [333.522s] Deallocating reference... [0.068206s] Loading reference sequences... [353.788s] Masking reference... [56.8889s] Initializing temporary storage... [0.004909s] Building reference histograms... [12.948s] Allocating buffers... [0.00019s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.04553s] Building query seed array... [1.78002s] Computing hash join... [6.8414s] Building seed filter... [0.087974s] Searching alignments... [131.676s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.1498s] Building query seed array... [2.12899s] Computing hash join... [5.50854s] Building seed filter... [0.091533s] Searching alignments... [188.738s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.4774s] Building query seed array... [2.10831s] Computing hash join... [5.51227s] Building seed filter... [0.124141s] Searching alignments... [83.529s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.51637s] Building query seed array... [1.90177s] Computing hash join... [6.06584s] Building seed filter... [0.08402s] Searching alignments... [90.0024s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.53871s] Building query seed array... [1.66532s] Computing hash join... [5.56145s] Building seed filter... [0.102443s] Searching alignments... [68.9854s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.9408s] Building query seed array... [1.93544s] Computing hash join... [5.55083s] Building seed filter... [0.080285s] Searching alignments... [67.2296s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.5134s] Building query seed array... [2.009s] Computing hash join... [5.7798s] Building seed filter... [0.109118s] Searching alignments... [123.325s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.42279s] Building query seed array... [1.62614s] Computing hash join... [5.31763s] Building seed filter... [0.079347s] Searching alignments... [56.7108s] Deallocating buffers... [2.09143s] Opening temporary output file... [0.001804s] Computing alignments... [480.162s] Deallocating reference... [0.340712s] Loading reference sequences... [322.47s] Masking reference... [57.0635s] Initializing temporary storage... [0.005558s] Building reference histograms... [13.0062s] Allocating buffers... [0.000212s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.24847s] Building query seed array... [1.84537s] Computing hash join... [7.74506s] Building seed filter... [0.090279s] Searching alignments... [119.539s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [11.8484s] Building query seed array... [2.18634s] Computing hash join... [4.92187s] Building seed filter... [0.08043s] Searching alignments... [131.488s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.2684s] Building query seed array... [2.19876s] Computing hash join... [6.03774s] Building seed filter... [0.081556s] Searching alignments... [78.6065s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [10.2067s] Building query seed array... [1.82645s] Computing hash join... [5.60955s] Building seed filter... [0.155672s] Searching alignments... [114.621s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.48646s] Building query seed array... [1.69019s] Computing hash join... [4.32444s] Building seed filter... [0.115853s] Searching alignments... [113.448s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.1159s] Building query seed array... [1.85872s] Computing hash join... [6.01572s] Building seed filter... [0.115159s] Searching alignments... [79.4468s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.256s] Building query seed array... [2.21099s] Computing hash join... [4.91037s] Building seed filter... [0.081011s] Searching alignments... [78.075s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.71715s] Building query seed array... [1.62902s] Computing hash join... [5.16499s] Building seed filter... [0.124216s] Searching alignments... [46.1177s] Deallocating buffers... [2.22619s] Opening temporary output file... [0.001942s] Computing alignments... [407.972s] Deallocating reference... [0.270763s] Loading reference sequences... [335.969s] Masking reference... [57.0586s] Initializing temporary storage... [0.004498s] Building reference histograms... [13.0768s] Allocating buffers... [0.000197s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.0988s] Building query seed array... [2.14735s] Computing hash join... [7.26263s] Building seed filter... [0.099161s] Searching alignments... [93.2319s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.4704s] Building query seed array... [2.20481s] Computing hash join... [5.63477s] Building seed filter... [0.136897s] Searching alignments... [101.975s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.4388s] Building query seed array... [2.51601s] Computing hash join... [4.52324s] Building seed filter... [0.087533s] Searching alignments... [87.4391s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.91413s] Building query seed array... [1.87256s] Computing hash join... [4.60392s] Building seed filter... [0.122729s] Searching alignments... [84.529s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.37922s] Building query seed array... [1.68923s] Computing hash join... [4.61665s] Building seed filter... [0.132112s] Searching alignments... [57.2257s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.0407s] Building query seed array... [1.95422s] Computing hash join... [5.52359s] Building seed filter... [0.110355s] Searching alignments... [73.8296s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.1744s] Building query seed array... [1.92985s] Computing hash join... [5.72971s] Building seed filter... [0.106084s] Searching alignments... [69.0932s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.81387s] Building query seed array... [1.68574s] Computing hash join... [5.40614s] Building seed filter... [0.123451s] Searching alignments... [40.9572s] Deallocating buffers... [2.29343s] Opening temporary output file... [0.00074s] Computing alignments... [324.389s] Deallocating reference... [0.246712s] Loading reference sequences... [15.3745s] Masking reference... [21.3874s] Initializing temporary storage... [0.005867s] Building reference histograms... [5.11298s] Allocating buffers... [8.2e-05s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.39229s] Building query seed array... [1.77337s] Computing hash join... [1.91388s] Building seed filter... [0.053728s] Searching alignments... [39.9781s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.21176s] Building query seed array... [2.11806s] Computing hash join... [1.92713s] Building seed filter... [0.049102s] Searching alignments... [75.1923s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.30382s] Building query seed array... [2.12939s] Computing hash join... [1.93862s] Building seed filter... [0.048314s] Searching alignments... [27.8887s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.24081s] Building query seed array... [1.76671s] Computing hash join... [1.97326s] Building seed filter... [0.066324s] Searching alignments... [32.903s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.30582s] Building query seed array... [1.57099s] Computing hash join... [1.82091s] Building seed filter... [0.044168s] Searching alignments... [25.3071s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18847s] Building query seed array... [1.88723s] Computing hash join... [1.81186s] Building seed filter... [0.045155s] Searching alignments... [19.8576s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.24741s] Building query seed array... [1.91355s] Computing hash join... [1.82702s] Building seed filter... [0.04394s] Searching alignments... [21.7066s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.36107s] Building query seed array... [1.58814s] Computing hash join... [1.80842s] Building seed filter... [0.075015s] Searching alignments... [23.3254s] Deallocating buffers... [0.034054s] Opening temporary output file... [0.013676s] Computing alignments... [166.02s] Deallocating reference... [0.029727s] Loading reference sequences... [0.040106s] Deallocating buffers... [0.500258s] Joining output blocks... [452.964s] Deallocating queries... [0.042112s] Loading query sequences... [3.4e-05s] Closing the input file... [6.1e-05s] Closing the output file... [0.365367s] Closing the database file... [3e-05s] Deallocating taxonomy... [1e-05s] Total time = 9102.83s Reported 2654125418 pairwise alignments, 2654158268 HSPs. 5010237 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.063623s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.090228s] Opening the output file... [0.000411s] Loading query sequences... [66.7574s] Masking queries... [50.3288s] Building query seed set... [0.286272s] Algorithm: Double-indexed Building query histograms... [2.53496s] Allocating buffers... [0.000714s] Loading reference sequences... [43.6829s] Masking reference... [58.4054s] Initializing temporary storage... [0.005544s] Building reference histograms... [13.0076s] Allocating buffers... [0.000194s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.04826s] Building query seed array... [1.67973s] Computing hash join... [5.98687s] Building seed filter... [0.10502s] Searching alignments... [128.041s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.5548s] Building query seed array... [2.41415s] Computing hash join... [5.89424s] Building seed filter... [0.081951s] Searching alignments... [143.244s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.1143s] Building query seed array... [2.17259s] Computing hash join... [5.62793s] Building seed filter... [0.103224s] Searching alignments... [98.149s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.28568s] Building query seed array... [1.84934s] Computing hash join... [5.60804s] Building seed filter... [0.102436s] Searching alignments... [99.5481s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.23358s] Building query seed array... [1.66217s] Computing hash join... [6.02045s] Building seed filter... [0.095425s] Searching alignments... [72.9242s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.466s] Building query seed array... [1.91613s] Computing hash join... [6.03009s] Building seed filter... [0.094185s] Searching alignments... [80.9326s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.9438s] Building query seed array... [1.99061s] Computing hash join... [6.15509s] Building seed filter... [0.090831s] Searching alignments... [113.607s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.3187s] Building query seed array... [1.66805s] Computing hash join... [5.61078s] Building seed filter... [0.102924s] Searching alignments... [70.6692s] Deallocating buffers... [1.30889s] Opening temporary output file... [0.002077s] Computing alignments... [474.172s] Deallocating reference... [0.08004s] Loading reference sequences... [45.7761s] Masking reference... [57.6367s] Initializing temporary storage... [0.005459s] Building reference histograms... [12.808s] Allocating buffers... [0.000189s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.01606s] Building query seed array... [1.86387s] Computing hash join... [6.68642s] Building seed filter... [0.10815s] Searching alignments... [95.3768s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.4595s] Building query seed array... [2.26462s] Computing hash join... [5.84126s] Building seed filter... [0.094178s] Searching alignments... [95.9454s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.7889s] Building query seed array... [2.29442s] Computing hash join... [6.11618s] Building seed filter... [0.084325s] Searching alignments... [74.254s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [10.047s] Building query seed array... [1.93982s] Computing hash join... [5.31215s] Building seed filter... [0.122324s] Searching alignments... [66.2738s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.55275s] Building query seed array... [1.64429s] Computing hash join... [5.32847s] Building seed filter... [0.116395s] Searching alignments... [95.4183s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.0252s] Building query seed array... [1.99772s] Computing hash join... [5.77453s] Building seed filter... [0.086852s] Searching alignments... [52.9982s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.4939s] Building query seed array... [2.04962s] Computing hash join... [5.11765s] Building seed filter... [0.101514s] Searching alignments... [54.9503s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.47068s] Building query seed array... [1.6043s] Computing hash join... [5.55657s] Building seed filter... [0.087408s] Searching alignments... [52.5105s] Deallocating buffers... [2.09505s] Opening temporary output file... [0.000687s] Computing alignments... [334.372s] Deallocating reference... [0.647826s] Loading reference sequences... [48.6585s] Masking reference... [57.0214s] Initializing temporary storage... [0.005879s] Building reference histograms... [12.8802s] Allocating buffers... [0.000193s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.17877s] Building query seed array... [1.75901s] Computing hash join... [6.54015s] Building seed filter... [0.119462s] Searching alignments... [115.404s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.8177s] Building query seed array... [2.23889s] Computing hash join... [4.95338s] Building seed filter... [0.1118s] Searching alignments... [134.269s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [13.8377s] Building query seed array... [2.24042s] Computing hash join... [5.66385s] Building seed filter... [0.138202s] Searching alignments... [91.7283s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.87674s] Building query seed array... [1.84517s] Computing hash join... [5.76732s] Building seed filter... [0.108741s] Searching alignments... [74.1053s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.68167s] Building query seed array... [1.72258s] Computing hash join... [5.70817s] Building seed filter... [0.106538s] Searching alignments... [77.9116s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.9744s] Building query seed array... [1.99697s] Computing hash join... [5.91812s] Building seed filter... [0.07763s] Searching alignments... [69.5592s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.4378s] Building query seed array... [2.05719s] Computing hash join... [5.37295s] Building seed filter... [0.119752s] Searching alignments... [95.1559s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.49627s] Building query seed array... [1.68485s] Computing hash join... [5.49327s] Building seed filter... [0.109961s] Searching alignments... [65.0799s] Deallocating buffers... [2.1353s] Opening temporary output file... [0.000549s] Computing alignments... [444.321s] Deallocating reference... [0.076792s] Loading reference sequences... [337.774s] Masking reference... [56.9525s] Initializing temporary storage... [0.004579s] Building reference histograms... [12.7312s] Allocating buffers... [0.000235s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.08456s] Building query seed array... [1.84419s] Computing hash join... [5.57099s] Building seed filter... [0.138835s] Searching alignments... [160.309s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [14.5808s] Building query seed array... [2.31588s] Computing hash join... [4.62615s] Building seed filter... [0.086058s] Searching alignments... [122.11s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.8433s] Building query seed array... [2.24587s] Computing hash join... [4.70358s] Building seed filter... [0.1111s] Searching alignments... [81.3773s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.61407s] Building query seed array... [1.95422s] Computing hash join... [5.35353s] Building seed filter... [0.085843s] Searching alignments... [101.98s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.75189s] Building query seed array... [1.66975s] Computing hash join... [5.4655s] Building seed filter... [0.123268s] Searching alignments... [159.236s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.3215s] Building query seed array... [2.04294s] Computing hash join... [4.34804s] Building seed filter... [0.110533s] Searching alignments... [77.4867s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.3443s] Building query seed array... [2.03925s] Computing hash join... [4.52055s] Building seed filter... [0.123932s] Searching alignments... [77.683s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.61662s] Building query seed array... [1.69981s] Computing hash join... [4.41069s] Building seed filter... [0.103517s] Searching alignments... [53.3829s] Deallocating buffers... [2.37632s] Opening temporary output file... [0.000734s] Computing alignments... [399.18s] Deallocating reference... [0.446337s] Loading reference sequences... [37.3615s] Masking reference... [58.6115s] Initializing temporary storage... [0.005367s] Building reference histograms... [12.7392s] Allocating buffers... [0.000187s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.02197s] Building query seed array... [1.83111s] Computing hash join... [5.58404s] Building seed filter... [0.106712s] Searching alignments... [82.9387s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.8105s] Building query seed array... [2.2557s] Computing hash join... [5.65904s] Building seed filter... [0.098391s] Searching alignments... [78.1068s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [11.9352s] Building query seed array... [2.24608s] Computing hash join... [4.78702s] Building seed filter... [0.083739s] Searching alignments... [65.5209s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.50218s] Building query seed array... [1.90146s] Computing hash join... [5.4256s] Building seed filter... [0.086407s] Searching alignments... [48.7353s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.27831s] Building query seed array... [1.60854s] Computing hash join... [5.36275s] Building seed filter... [0.091371s] Searching alignments... [52.3853s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.9317s] Building query seed array... [2.01625s] Computing hash join... [4.94511s] Building seed filter... [0.082167s] Searching alignments... [47.1886s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.9693s] Building query seed array... [1.92873s] Computing hash join... [5.70967s] Building seed filter... [0.080056s] Searching alignments... [52.3156s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.50579s] Building query seed array... [1.70747s] Computing hash join... [5.48411s] Building seed filter... [0.109166s] Searching alignments... [44.9763s] Deallocating buffers... [1.65793s] Opening temporary output file... [0.000691s] Computing alignments... [309.759s] Deallocating reference... [0.672265s] Loading reference sequences... [15.2886s] Masking reference... [21.4708s] Initializing temporary storage... [0.004376s] Building reference histograms... [4.75081s] Allocating buffers... [0.000187s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.32892s] Building query seed array... [1.84703s] Computing hash join... [1.94465s] Building seed filter... [0.052504s] Searching alignments... [37.7879s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.29275s] Building query seed array... [2.08854s] Computing hash join... [1.95277s] Building seed filter... [0.050042s] Searching alignments... [52.2931s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.31127s] Building query seed array... [2.07634s] Computing hash join... [2.01271s] Building seed filter... [0.048173s] Searching alignments... [28.6618s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26786s] Building query seed array... [1.89616s] Computing hash join... [1.92879s] Building seed filter... [0.061615s] Searching alignments... [26.6143s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.2521s] Building query seed array... [1.61599s] Computing hash join... [1.8447s] Building seed filter... [0.046055s] Searching alignments... [29.0232s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.18449s] Building query seed array... [1.90403s] Computing hash join... [1.84442s] Building seed filter... [0.049428s] Searching alignments... [24.2964s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.31191s] Building query seed array... [1.90366s] Computing hash join... [1.85951s] Building seed filter... [0.046794s] Searching alignments... [24.2269s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.22574s] Building query seed array... [1.70409s] Computing hash join... [1.88379s] Building seed filter... [0.046641s] Searching alignments... [24.0533s] Deallocating buffers... [0.05324s] Opening temporary output file... [0.009065s] Computing alignments... [158.972s] Deallocating reference... [0.029969s] Loading reference sequences... [0.013022s] Deallocating buffers... [0.504896s] Joining output blocks... [335.289s] Deallocating queries... [0.036115s] Loading query sequences... [4.3e-05s] Closing the input file... [6.3e-05s] Closing the output file... [0.384441s] Closing the database file... [5.3e-05s] Deallocating taxonomy... [2.4e-05s] Total time = 7967.67s Reported 2433926480 pairwise alignments, 2433952012 HSPs. 4907412 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.094543s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.082104s] Opening the output file... [0.000408s] Loading query sequences... [58.254s] Masking queries... [45.6776s] Building query seed set... [0.260013s] Algorithm: Double-indexed Building query histograms... [2.21343s] Allocating buffers... [0.000707s] Loading reference sequences... [375.346s] Masking reference... [58.6598s] Initializing temporary storage... [0.005551s] Building reference histograms... [12.2781s] Allocating buffers... [0.000229s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.03411s] Building query seed array... [1.40219s] Computing hash join... [5.57934s] Building seed filter... [0.108817s] Searching alignments... [121.167s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.4901s] Building query seed array... [2.1324s] Computing hash join... [5.00954s] Building seed filter... [0.092159s] Searching alignments... [96.6002s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.884s] Building query seed array... [1.91957s] Computing hash join... [6.32893s] Building seed filter... [0.110874s] Searching alignments... [81.194s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.3898s] Building query seed array... [1.65668s] Computing hash join... [5.62513s] Building seed filter... [0.108176s] Searching alignments... [80.0581s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.07989s] Building query seed array... [1.40187s] Computing hash join... [5.72028s] Building seed filter... [0.075461s] Searching alignments... [67.7481s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.6021s] Building query seed array... [1.74866s] Computing hash join... [5.21154s] Building seed filter... [0.078133s] Searching alignments... [74.0712s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.9086s] Building query seed array... [1.72586s] Computing hash join... [5.68738s] Building seed filter... [0.139262s] Searching alignments... [127.42s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.1368s] Building query seed array... [1.48466s] Computing hash join... [4.99654s] Building seed filter... [0.095198s] Searching alignments... [57.9879s] Deallocating buffers... [1.23388s] Opening temporary output file... [0.000742s] Computing alignments... [415.492s] Deallocating reference... [0.092897s] Loading reference sequences... [352.761s] Masking reference... [57.2556s] Initializing temporary storage... [0.004775s] Building reference histograms... [12.2157s] Allocating buffers... [0.000194s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.02057s] Building query seed array... [1.65566s] Computing hash join... [6.35067s] Building seed filter... [0.159602s] Searching alignments... [92.2696s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [13.3928s] Building query seed array... [1.92906s] Computing hash join... [5.16946s] Building seed filter... [0.132518s] Searching alignments... [68.3619s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.6493s] Building query seed array... [1.93917s] Computing hash join... [5.53753s] Building seed filter... [0.1164s] Searching alignments... [62.0145s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.86942s] Building query seed array... [1.6364s] Computing hash join... [4.3179s] Building seed filter... [0.075639s] Searching alignments... [58.9296s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.624s] Building query seed array... [1.47018s] Computing hash join... [4.77419s] Building seed filter... [0.074527s] Searching alignments... [63.3711s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.138s] Building query seed array... [1.75325s] Computing hash join... [4.87011s] Building seed filter... [0.071978s] Searching alignments... [47.5832s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.4376s] Building query seed array... [1.68279s] Computing hash join... [5.00581s] Building seed filter... [0.110097s] Searching alignments... [44.7752s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.96015s] Building query seed array... [1.44048s] Computing hash join... [5.00927s] Building seed filter... [0.123688s] Searching alignments... [40.3998s] Deallocating buffers... [2.50253s] Opening temporary output file... [0.002314s] Computing alignments... [295.899s] Deallocating reference... [0.336027s] Loading reference sequences... [348.216s] Masking reference... [57.0345s] Initializing temporary storage... [0.004714s] Building reference histograms... [13.5897s] Allocating buffers... [0.000192s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.15433s] Building query seed array... [1.56287s] Computing hash join... [7.10112s] Building seed filter... [0.095615s] Searching alignments... [114.043s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.7364s] Building query seed array... [1.82975s] Computing hash join... [4.7743s] Building seed filter... [0.079477s] Searching alignments... [84.6382s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [13.0123s] Building query seed array... [1.86603s] Computing hash join... [6.38904s] Building seed filter... [0.092323s] Searching alignments... [72.6653s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.85672s] Building query seed array... [1.58385s] Computing hash join... [5.83925s] Building seed filter... [0.079966s] Searching alignments... [76.4658s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.79662s] Building query seed array... [1.38972s] Computing hash join... [5.32736s] Building seed filter... [0.132823s] Searching alignments... [62.5718s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.3678s] Building query seed array... [1.62609s] Computing hash join... [5.39236s] Building seed filter... [0.138316s] Searching alignments... [58.3631s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.4636s] Building query seed array... [1.64215s] Computing hash join... [5.32954s] Building seed filter... [0.117887s] Searching alignments... [109.478s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.66125s] Building query seed array... [1.37105s] Computing hash join... [5.30593s] Building seed filter... [0.106662s] Searching alignments... [49.6141s] Deallocating buffers... [2.20751s] Opening temporary output file... [0.002292s] Computing alignments... [395.934s] Deallocating reference... [0.088252s] Loading reference sequences... [37.6281s] Masking reference... [58.8573s] Initializing temporary storage... [0.00459s] Building reference histograms... [12.6177s] Allocating buffers... [0.00025s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.04133s] Building query seed array... [1.40107s] Computing hash join... [5.98447s] Building seed filter... [0.111754s] Searching alignments... [104.061s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.6233s] Building query seed array... [1.80809s] Computing hash join... [5.72924s] Building seed filter... [0.114832s] Searching alignments... [113.678s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.19s] Building query seed array... [1.78661s] Computing hash join... [6.20586s] Building seed filter... [0.092057s] Searching alignments... [70.0067s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.49106s] Building query seed array... [1.47685s] Computing hash join... [6.36386s] Building seed filter... [0.093506s] Searching alignments... [95.7714s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.4294s] Building query seed array... [1.28831s] Computing hash join... [4.08643s] Building seed filter... [0.093911s] Searching alignments... [94.791s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.8383s] Building query seed array... [1.55423s] Computing hash join... [4.41373s] Building seed filter... [0.084577s] Searching alignments... [68.0652s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.1384s] Building query seed array... [1.56376s] Computing hash join... [5.4606s] Building seed filter... [0.072846s] Searching alignments... [76.3756s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.31718s] Building query seed array... [1.31136s] Computing hash join... [5.49038s] Building seed filter... [0.076691s] Searching alignments... [41.2679s] Deallocating buffers... [1.52263s] Opening temporary output file... [0.000582s] Computing alignments... [365.581s] Deallocating reference... [0.318803s] Loading reference sequences... [313.364s] Masking reference... [57.4622s] Initializing temporary storage... [0.005348s] Building reference histograms... [13.5951s] Allocating buffers... [0.000175s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.13229s] Building query seed array... [1.43175s] Computing hash join... [6.38253s] Building seed filter... [0.147553s] Searching alignments... [82.9226s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [13.5874s] Building query seed array... [1.73653s] Computing hash join... [5.90691s] Building seed filter... [0.079427s] Searching alignments... [87.9969s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.6569s] Building query seed array... [1.78069s] Computing hash join... [5.84784s] Building seed filter... [0.107306s] Searching alignments... [77.1384s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.58906s] Building query seed array... [1.43996s] Computing hash join... [6.32099s] Building seed filter... [0.07906s] Searching alignments... [46.6592s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.28619s] Building query seed array... [1.29329s] Computing hash join... [5.52025s] Building seed filter... [0.082892s] Searching alignments... [60.3272s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.145s] Building query seed array... [1.55628s] Computing hash join... [4.86501s] Building seed filter... [0.109961s] Searching alignments... [72.9508s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.2934s] Building query seed array... [1.58745s] Computing hash join... [4.61543s] Building seed filter... [0.089639s] Searching alignments... [64.1417s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.15493s] Building query seed array... [1.28218s] Computing hash join... [5.74577s] Building seed filter... [0.080119s] Searching alignments... [35.4583s] Deallocating buffers... [2.18082s] Opening temporary output file... [0.000626s] Computing alignments... [287.294s] Deallocating reference... [0.068931s] Loading reference sequences... [17.0416s] Masking reference... [21.616s] Initializing temporary storage... [0.004594s] Building reference histograms... [4.54404s] Allocating buffers... [0.000188s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.29086s] Building query seed array... [1.35817s] Computing hash join... [1.85242s] Building seed filter... [0.053351s] Searching alignments... [35.1788s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.25892s] Building query seed array... [1.63539s] Computing hash join... [1.88858s] Building seed filter... [0.048931s] Searching alignments... [34.7557s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.27731s] Building query seed array... [1.72774s] Computing hash join... [1.88175s] Building seed filter... [0.046444s] Searching alignments... [23.7728s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.26976s] Building query seed array... [1.36703s] Computing hash join... [1.87223s] Building seed filter... [0.046811s] Searching alignments... [22.8051s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.23607s] Building query seed array... [1.27636s] Computing hash join... [1.78897s] Building seed filter... [0.04235s] Searching alignments... [23.1562s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.16984s] Building query seed array... [1.48463s] Computing hash join... [1.7996s] Building seed filter... [0.042899s] Searching alignments... [17.8017s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27788s] Building query seed array... [1.49347s] Computing hash join... [1.76689s] Building seed filter... [0.050343s] Searching alignments... [19.1693s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.2208s] Building query seed array... [1.21451s] Computing hash join... [1.80796s] Building seed filter... [0.048674s] Searching alignments... [20.3459s] Deallocating buffers... [0.047031s] Opening temporary output file... [0.014418s] Computing alignments... [133.542s] Deallocating reference... [0.029774s] Loading reference sequences... [0.014879s] Deallocating buffers... [0.019059s] Joining output blocks... [306.549s] Deallocating queries... [0.031688s] Loading query sequences... [3.2e-05s] Closing the input file... [4.8e-05s] Closing the output file... [0.431758s] Closing the database file... [3.3e-05s] Deallocating taxonomy... [9e-06s] Total time = 8123.01s Reported 2213026531 pairwise alignments, 2213054337 HSPs. 4383597 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.069803s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.105419s] Opening the output file... [0.001014s] Loading query sequences... [58.7921s] Masking queries... [42.9794s] Building query seed set... [0.260104s] Algorithm: Double-indexed Building query histograms... [2.21088s] Allocating buffers... [0.000714s] Loading reference sequences... [42.6373s] Masking reference... [58.8971s] Initializing temporary storage... [0.004349s] Building reference histograms... [13.1645s] Allocating buffers... [0.000201s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.99223s] Building query seed array... [1.44079s] Computing hash join... [6.98998s] Building seed filter... [0.093376s] Searching alignments... [110.09s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.6453s] Building query seed array... [1.99263s] Computing hash join... [7.10107s] Building seed filter... [0.097006s] Searching alignments... [124.681s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [11.8298s] Building query seed array... [1.8093s] Computing hash join... [7.55241s] Building seed filter... [0.083038s] Searching alignments... [83.6931s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.97257s] Building query seed array... [1.50913s] Computing hash join... [6.94937s] Building seed filter... [0.089289s] Searching alignments... [86.8762s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.84258s] Building query seed array... [1.31367s] Computing hash join... [7.39742s] Building seed filter... [0.08014s] Searching alignments... [62.194s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.3423s] Building query seed array... [1.6024s] Computing hash join... [7.1317s] Building seed filter... [0.098546s] Searching alignments... [71.994s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.6618s] Building query seed array... [1.60519s] Computing hash join... [7.64476s] Building seed filter... [0.109344s] Searching alignments... [94.9628s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [8.76043s] Building query seed array... [1.33414s] Computing hash join... [7.61681s] Building seed filter... [0.082182s] Searching alignments... [61.2021s] Deallocating buffers... [0.842801s] Opening temporary output file... [0.00057s] Computing alignments... [416.089s] Deallocating reference... [0.237737s] Loading reference sequences... [366.001s] Masking reference... [57.4061s] Initializing temporary storage... [0.00621s] Building reference histograms... [13.2127s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.02895s] Building query seed array... [1.46721s] Computing hash join... [6.27445s] Building seed filter... [0.099533s] Searching alignments... [81.5449s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.0184s] Building query seed array... [1.90826s] Computing hash join... [5.24875s] Building seed filter... [0.122647s] Searching alignments... [84.7137s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.1916s] Building query seed array... [1.92865s] Computing hash join... [4.53992s] Building seed filter... [0.109444s] Searching alignments... [64.2771s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.68177s] Building query seed array... [1.61555s] Computing hash join... [4.64723s] Building seed filter... [0.119316s] Searching alignments... [57.2804s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.33873s] Building query seed array... [1.3476s] Computing hash join... [5.09165s] Building seed filter... [0.083715s] Searching alignments... [81.5767s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.3198s] Building query seed array... [1.60223s] Computing hash join... [4.41009s] Building seed filter... [0.103002s] Searching alignments... [47.6925s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.3154s] Building query seed array... [1.70807s] Computing hash join... [5.13791s] Building seed filter... [0.083056s] Searching alignments... [48.3123s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.06451s] Building query seed array... [1.43151s] Computing hash join... [4.19419s] Building seed filter... [0.073947s] Searching alignments... [45.0957s] Deallocating buffers... [1.5605s] Opening temporary output file... [0.001719s] Computing alignments... [294.621s] Deallocating reference... [0.075405s] Loading reference sequences... [360.369s] Masking reference... [57.4172s] Initializing temporary storage... [0.005975s] Building reference histograms... [13.3693s] Allocating buffers... [0.000187s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.04824s] Building query seed array... [1.61258s] Computing hash join... [6.9386s] Building seed filter... [0.09768s] Searching alignments... [98.8023s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [11.9343s] Building query seed array... [1.91527s] Computing hash join... [6.05111s] Building seed filter... [0.091357s] Searching alignments... [116.456s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.9288s] Building query seed array... [1.91827s] Computing hash join... [5.86642s] Building seed filter... [0.090562s] Searching alignments... [80.1801s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [10.2252s] Building query seed array... [1.56927s] Computing hash join... [5.61152s] Building seed filter... [0.125881s] Searching alignments... [62.9759s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.67661s] Building query seed array... [1.40492s] Computing hash join... [4.96109s] Building seed filter... [0.123929s] Searching alignments... [69.2982s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.9297s] Building query seed array... [1.65013s] Computing hash join... [5.6052s] Building seed filter... [0.089175s] Searching alignments... [57.9163s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.2075s] Building query seed array... [1.71899s] Computing hash join... [5.18763s] Building seed filter... [0.10464s] Searching alignments... [80.4069s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.63076s] Building query seed array... [1.43151s] Computing hash join... [4.18136s] Building seed filter... [0.117431s] Searching alignments... [54.9755s] Deallocating buffers... [2.30975s] Opening temporary output file... [0.000582s] Computing alignments... [388.172s] Deallocating reference... [0.081217s] Loading reference sequences... [36.4535s] Masking reference... [57.2188s] Initializing temporary storage... [0.004487s] Building reference histograms... [13.2318s] Allocating buffers... [0.00021s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.41416s] Building query seed array... [1.55623s] Computing hash join... [6.60952s] Building seed filter... [0.106218s] Searching alignments... [141.74s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.6089s] Building query seed array... [1.84112s] Computing hash join... [4.59116s] Building seed filter... [0.086605s] Searching alignments... [104.655s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.425s] Building query seed array... [1.89183s] Computing hash join... [4.80608s] Building seed filter... [0.097875s] Searching alignments... [72.3742s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.65724s] Building query seed array... [1.57742s] Computing hash join... [5.42864s] Building seed filter... [0.112766s] Searching alignments... [89.2349s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.50618s] Building query seed array... [1.37573s] Computing hash join... [5.15737s] Building seed filter... [0.120012s] Searching alignments... [138.499s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.9689s] Building query seed array... [1.63906s] Computing hash join... [5.92855s] Building seed filter... [0.081792s] Searching alignments... [64.7748s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.3133s] Building query seed array... [1.66371s] Computing hash join... [4.86823s] Building seed filter... [0.074909s] Searching alignments... [68.2903s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.53677s] Building query seed array... [1.38321s] Computing hash join... [4.08556s] Building seed filter... [0.106747s] Searching alignments... [46.2331s] Deallocating buffers... [1.95171s] Opening temporary output file... [0.000657s] Computing alignments... [360.184s] Deallocating reference... [0.39266s] Loading reference sequences... [36.1697s] Masking reference... [58.3871s] Initializing temporary storage... [0.004693s] Building reference histograms... [12.5247s] Allocating buffers... [0.000204s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.95315s] Building query seed array... [1.41411s] Computing hash join... [7.7908s] Building seed filter... [0.097158s] Searching alignments... [73.4416s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.6828s] Building query seed array... [1.78224s] Computing hash join... [7.43085s] Building seed filter... [0.098395s] Searching alignments... [67.7151s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.1511s] Building query seed array... [1.80893s] Computing hash join... [7.29763s] Building seed filter... [0.107609s] Searching alignments... [58.1852s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.40271s] Building query seed array... [1.48973s] Computing hash join... [7.08472s] Building seed filter... [0.100763s] Searching alignments... [42.9623s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.11793s] Building query seed array... [1.25191s] Computing hash join... [7.21467s] Building seed filter... [0.114082s] Searching alignments... [46.2376s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.6031s] Building query seed array... [1.56617s] Computing hash join... [7.96231s] Building seed filter... [0.077753s] Searching alignments... [38.2147s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.909s] Building query seed array... [1.63099s] Computing hash join... [7.22012s] Building seed filter... [0.085274s] Searching alignments... [43.7222s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.14168s] Building query seed array... [1.24048s] Computing hash join... [6.94935s] Building seed filter... [0.098337s] Searching alignments... [47.5386s] Deallocating buffers... [1.21535s] Opening temporary output file... [0.00126s] Computing alignments... [276.479s] Deallocating reference... [0.069951s] Loading reference sequences... [14.7365s] Masking reference... [21.4621s] Initializing temporary storage... [0.003687s] Building reference histograms... [4.9456s] Allocating buffers... [0.000187s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.36539s] Building query seed array... [1.46922s] Computing hash join... [1.88084s] Building seed filter... [0.05147s] Searching alignments... [33.5482s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.26427s] Building query seed array... [1.69556s] Computing hash join... [1.86637s] Building seed filter... [0.047161s] Searching alignments... [44.5488s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.35062s] Building query seed array... [1.76732s] Computing hash join... [1.9247s] Building seed filter... [0.051095s] Searching alignments... [25.3729s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25338s] Building query seed array... [1.43161s] Computing hash join... [1.89786s] Building seed filter... [0.052731s] Searching alignments... [22.3771s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.2675s] Building query seed array... [1.29499s] Computing hash join... [1.85151s] Building seed filter... [0.041753s] Searching alignments... [24.6204s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.16948s] Building query seed array... [1.54325s] Computing hash join... [1.82118s] Building seed filter... [0.042517s] Searching alignments... [21.1995s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.2392s] Building query seed array... [1.56484s] Computing hash join... [1.7543s] Building seed filter... [0.042119s] Searching alignments... [20.3815s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.26448s] Building query seed array... [1.23789s] Computing hash join... [1.74625s] Building seed filter... [0.047407s] Searching alignments... [20.0674s] Deallocating buffers... [0.050823s] Opening temporary output file... [0.011324s] Computing alignments... [139.651s] Deallocating reference... [0.029136s] Loading reference sequences... [0.017058s] Deallocating buffers... [0.019677s] Joining output blocks... [293.798s] Deallocating queries... [0.042993s] Loading query sequences... [4e-05s] Closing the input file... [6.6e-05s] Closing the output file... [0.390455s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [2.5e-05s] Total time = 7497.92s Reported 2131161437 pairwise alignments, 2131183326 HSPs. 4260225 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.0542s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.071465s] Opening the output file... [0.00042s] Loading query sequences... [63.1704s] Masking queries... [44.6922s] Building query seed set... [0.334775s] Algorithm: Double-indexed Building query histograms... [2.34025s] Allocating buffers... [0.000743s] Loading reference sequences... [42.2812s] Masking reference... [58.2462s] Initializing temporary storage... [0.004677s] Building reference histograms... [12.2779s] Allocating buffers... [0.00023s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [8.98285s] Building query seed array... [1.48727s] Computing hash join... [5.13058s] Building seed filter... [0.057986s] Searching alignments... [163.691s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.0322s] Building query seed array... [2.15811s] Computing hash join... [5.84987s] Building seed filter... [0.053124s] Searching alignments... [246.301s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.2823s] Building query seed array... [2.03601s] Computing hash join... [4.9606s] Building seed filter... [0.046014s] Searching alignments... [109.255s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [8.93593s] Building query seed array... [1.69499s] Computing hash join... [4.84341s] Building seed filter... [0.032409s] Searching alignments... [136.032s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.26916s] Building query seed array... [1.49896s] Computing hash join... [5.28912s] Building seed filter... [0.041027s] Searching alignments... [148.272s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [11.7611s] Building query seed array... [1.76058s] Computing hash join... [5.91163s] Building seed filter... [0.034851s] Searching alignments... [78.9951s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.958s] Building query seed array... [1.82481s] Computing hash join... [5.59375s] Building seed filter... [0.061782s] Searching alignments... [119.867s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.18243s] Building query seed array... [1.45603s] Computing hash join... [5.56081s] Building seed filter... [0.045986s] Searching alignments... [72.6101s] Deallocating buffers... [1.53701s] Opening temporary output file... [0.000612s] Computing alignments... [610.032s] Deallocating reference... [0.095334s] Loading reference sequences... [47.7147s] Masking reference... [58.3809s] Initializing temporary storage... [0.004631s] Building reference histograms... [12.6419s] Allocating buffers... [0.000192s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.28351s] Building query seed array... [1.70709s] Computing hash join... [7.31049s] Building seed filter... [0.039695s] Searching alignments... [125.651s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.1298s] Building query seed array... [2.29133s] Computing hash join... [7.76544s] Building seed filter... [0.054549s] Searching alignments... [146.55s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [11.8544s] Building query seed array... [2.00122s] Computing hash join... [7.79549s] Building seed filter... [0.078414s] Searching alignments... [115.254s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [8.69745s] Building query seed array... [1.64329s] Computing hash join... [7.01035s] Building seed filter... [0.043496s] Searching alignments... [71.414s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.15384s] Building query seed array... [1.45561s] Computing hash join... [6.77182s] Building seed filter... [0.038853s] Searching alignments... [90.9147s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.4222s] Building query seed array... [1.78593s] Computing hash join... [7.81146s] Building seed filter... [0.036712s] Searching alignments... [108.027s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [11.7942s] Building query seed array... [1.84409s] Computing hash join... [7.2049s] Building seed filter... [0.051547s] Searching alignments... [73.2621s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [8.93328s] Building query seed array... [1.44149s] Computing hash join... [7.61863s] Building seed filter... [0.060058s] Searching alignments... [59.2888s] Deallocating buffers... [1.0724s] Opening temporary output file... [0.000713s] Computing alignments... [405.005s] Deallocating reference... [0.085065s] Loading reference sequences... [353.021s] Masking reference... [57.1198s] Initializing temporary storage... [0.004921s] Building reference histograms... [12.4234s] Allocating buffers... [0.000199s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.13978s] Building query seed array... [1.72796s] Computing hash join... [6.2332s] Building seed filter... [0.038899s] Searching alignments... [165.552s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.451s] Building query seed array... [2.02413s] Computing hash join... [3.94195s] Building seed filter... [0.034893s] Searching alignments... [151.942s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [13.5384s] Building query seed array... [2.08111s] Computing hash join... [4.15615s] Building seed filter... [0.036974s] Searching alignments... [110.828s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [10.0859s] Building query seed array... [1.76321s] Computing hash join... [4.15031s] Building seed filter... [0.036185s] Searching alignments... [129.05s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.72632s] Building query seed array... [1.52215s] Computing hash join... [4.13999s] Building seed filter... [0.062926s] Searching alignments... [137.332s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.0835s] Building query seed array... [1.78325s] Computing hash join... [5.87867s] Building seed filter... [0.034543s] Searching alignments... [103.774s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.4194s] Building query seed array... [1.82311s] Computing hash join... [4.835s] Building seed filter... [0.057954s] Searching alignments... [225.491s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.78422s] Building query seed array... [1.48246s] Computing hash join... [4.09221s] Building seed filter... [0.042445s] Searching alignments... [74.7653s] Deallocating buffers... [2.31625s] Opening temporary output file... [0.000676s] Computing alignments... [625.274s] Deallocating reference... [0.088689s] Loading reference sequences... [330.871s] Masking reference... [57.1067s] Initializing temporary storage... [0.004607s] Building reference histograms... [12.4504s] Allocating buffers... [0.000206s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.06387s] Building query seed array... [1.53103s] Computing hash join... [6.31749s] Building seed filter... [0.043608s] Searching alignments... [161.625s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.8661s] Building query seed array... [1.94727s] Computing hash join... [4.25876s] Building seed filter... [0.056801s] Searching alignments... [140.954s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.8566s] Building query seed array... [1.93399s] Computing hash join... [4.1868s] Building seed filter... [0.038509s] Searching alignments... [90.2321s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [10.111s] Building query seed array... [1.6044s] Computing hash join... [4.39344s] Building seed filter... [0.03683s] Searching alignments... [108.041s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.36033s] Building query seed array... [1.41765s] Computing hash join... [4.83912s] Building seed filter... [0.033681s] Searching alignments... [92.7535s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [11.9476s] Building query seed array... [1.69961s] Computing hash join... [4.35583s] Building seed filter... [0.03649s] Searching alignments... [69.5203s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.1811s] Building query seed array... [1.68612s] Computing hash join... [4.40445s] Building seed filter... [0.03154s] Searching alignments... [105.314s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.55921s] Building query seed array... [1.41129s] Computing hash join... [4.96221s] Building seed filter... [0.033059s] Searching alignments... [66.5435s] Deallocating buffers... [2.22693s] Opening temporary output file... [0.000684s] Computing alignments... [442.213s] Deallocating reference... [0.615912s] Loading reference sequences... [317.824s] Masking reference... [58.3695s] Initializing temporary storage... [0.005529s] Building reference histograms... [12.5273s] Allocating buffers... [0.00022s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.01015s] Building query seed array... [1.43947s] Computing hash join... [8.17261s] Building seed filter... [0.037556s] Searching alignments... [151.071s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.0382s] Building query seed array... [1.81972s] Computing hash join... [7.26018s] Building seed filter... [0.044228s] Searching alignments... [108.546s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.0998s] Building query seed array... [1.8476s] Computing hash join... [7.81411s] Building seed filter... [0.034471s] Searching alignments... [84.1593s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.3181s] Building query seed array... [1.49701s] Computing hash join... [7.0745s] Building seed filter... [0.04826s] Searching alignments... [89.7583s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [8.95217s] Building query seed array... [1.36649s] Computing hash join... [7.15359s] Building seed filter... [0.031381s] Searching alignments... [79.6138s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.9368s] Building query seed array... [1.65574s] Computing hash join... [7.87567s] Building seed filter... [0.030421s] Searching alignments... [67.3579s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [11.6275s] Building query seed array... [1.57292s] Computing hash join... [6.95792s] Building seed filter... [0.033718s] Searching alignments... [69.8384s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.28473s] Building query seed array... [1.28687s] Computing hash join... [7.26728s] Building seed filter... [0.045596s] Searching alignments... [42.931s] Deallocating buffers... [1.41907s] Opening temporary output file... [0.000625s] Computing alignments... [394.069s] Deallocating reference... [0.063528s] Loading reference sequences... [14.7611s] Masking reference... [20.951s] Initializing temporary storage... [0.004029s] Building reference histograms... [4.66437s] Allocating buffers... [0.000202s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.27816s] Building query seed array... [1.45051s] Computing hash join... [1.73266s] Building seed filter... [0.024541s] Searching alignments... [55.369s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23208s] Building query seed array... [1.73761s] Computing hash join... [1.75447s] Building seed filter... [0.021157s] Searching alignments... [91.6372s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.32053s] Building query seed array... [1.82646s] Computing hash join... [1.7845s] Building seed filter... [0.020355s] Searching alignments... [41.0072s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.25446s] Building query seed array... [1.46488s] Computing hash join... [1.74116s] Building seed filter... [0.019729s] Searching alignments... [50.5548s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.29282s] Building query seed array... [1.3338s] Computing hash join... [1.65364s] Building seed filter... [0.018075s] Searching alignments... [50.8274s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.215s] Building query seed array... [1.56008s] Computing hash join... [1.70402s] Building seed filter... [0.021823s] Searching alignments... [36.3794s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.27857s] Building query seed array... [1.61524s] Computing hash join... [1.66822s] Building seed filter... [0.019993s] Searching alignments... [111.709s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.25439s] Building query seed array... [1.29444s] Computing hash join... [1.64823s] Building seed filter... [0.024235s] Searching alignments... [25.2859s] Deallocating buffers... [0.04971s] Opening temporary output file... [0.01252s] Computing alignments... [225.093s] Deallocating reference... [0.027668s] Loading reference sequences... [0.067039s] Deallocating buffers... [0.022328s] Joining output blocks... [798.274s] Deallocating queries... [0.052154s] Loading query sequences... [3.9e-05s] Closing the input file... [6.4e-05s] Closing the output file... [0.259762s] Closing the database file... [3.8e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 10852.3s Reported 2984107258 pairwise alignments, 2984151264 HSPs. 5294120 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.053795s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.079395s] Opening the output file... [0.000406s] Loading query sequences... [64.2198s] Masking queries... [64.0002s] Building query seed set... [0.33296s] Algorithm: Double-indexed Building query histograms... [2.44025s] Allocating buffers... [0.000738s] Loading reference sequences... [43.8011s] Masking reference... [57.3262s] Initializing temporary storage... [0.005559s] Building reference histograms... [12.6838s] Allocating buffers... [0.000195s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.02286s] Building query seed array... [1.58064s] Computing hash join... [6.81347s] Building seed filter... [0.043703s] Searching alignments... [156.209s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.3229s] Building query seed array... [2.43796s] Computing hash join... [3.94971s] Building seed filter... [0.052124s] Searching alignments... [180.807s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.2646s] Building query seed array... [2.11718s] Computing hash join... [4.7996s] Building seed filter... [0.042142s] Searching alignments... [128.796s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.8983s] Building query seed array... [1.86522s] Computing hash join... [5.36925s] Building seed filter... [0.056684s] Searching alignments... [112.806s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.43326s] Building query seed array... [1.65893s] Computing hash join... [5.00656s] Building seed filter... [0.037017s] Searching alignments... [219.363s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [12.1327s] Building query seed array... [1.91079s] Computing hash join... [4.37547s] Building seed filter... [0.032262s] Searching alignments... [94.6634s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.0384s] Building query seed array... [1.86961s] Computing hash join... [5.26382s] Building seed filter... [0.052023s] Searching alignments... [112.559s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.21983s] Building query seed array... [1.66986s] Computing hash join... [5.39908s] Building seed filter... [0.034225s] Searching alignments... [88.752s] Deallocating buffers... [2.09391s] Opening temporary output file... [0.001611s] Computing alignments... [627.586s] Deallocating reference... [0.081648s] Loading reference sequences... [48.5535s] Masking reference... [57.2629s] Initializing temporary storage... [0.004694s] Building reference histograms... [12.9828s] Allocating buffers... [0.000208s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.07169s] Building query seed array... [1.74535s] Computing hash join... [6.79989s] Building seed filter... [0.042267s] Searching alignments... [116.292s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.6075s] Building query seed array... [2.21136s] Computing hash join... [5.09632s] Building seed filter... [0.038303s] Searching alignments... [117.748s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.1761s] Building query seed array... [2.24031s] Computing hash join... [4.06045s] Building seed filter... [0.036359s] Searching alignments... [88.8883s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [10.3961s] Building query seed array... [1.89949s] Computing hash join... [6.29864s] Building seed filter... [0.061277s] Searching alignments... [64.3289s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.52309s] Building query seed array... [1.69011s] Computing hash join... [4.52456s] Building seed filter... [0.048209s] Searching alignments... [98.2444s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [11.9941s] Building query seed array... [1.92909s] Computing hash join... [4.53813s] Building seed filter... [0.080074s] Searching alignments... [60.7878s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.5782s] Building query seed array... [1.9647s] Computing hash join... [5.55502s] Building seed filter... [0.070436s] Searching alignments... [59.6614s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.52746s] Building query seed array... [1.57743s] Computing hash join... [4.02708s] Building seed filter... [0.047299s] Searching alignments... [61.7352s] Deallocating buffers... [2.33402s] Opening temporary output file... [0.000655s] Computing alignments... [401.494s] Deallocating reference... [0.607038s] Loading reference sequences... [345.042s] Masking reference... [57.6841s] Initializing temporary storage... [0.004553s] Building reference histograms... [13.4227s] Allocating buffers... [0.0007s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.08506s] Building query seed array... [1.8456s] Computing hash join... [6.87801s] Building seed filter... [0.052247s] Searching alignments... [143.5s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.5294s] Building query seed array... [2.15172s] Computing hash join... [4.69378s] Building seed filter... [0.090911s] Searching alignments... [191.797s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.4925s] Building query seed array... [2.21225s] Computing hash join... [4.47594s] Building seed filter... [0.041932s] Searching alignments... [105.773s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [10.0866s] Building query seed array... [1.82038s] Computing hash join... [3.99761s] Building seed filter... [0.045887s] Searching alignments... [114.493s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.59032s] Building query seed array... [1.56525s] Computing hash join... [4.09697s] Building seed filter... [0.050244s] Searching alignments... [194.221s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.1818s] Building query seed array... [1.905s] Computing hash join... [5.69487s] Building seed filter... [0.061848s] Searching alignments... [74.01s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.2866s] Building query seed array... [1.9223s] Computing hash join... [4.46634s] Building seed filter... [0.032602s] Searching alignments... [223.07s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.46117s] Building query seed array... [1.62968s] Computing hash join... [4.70989s] Building seed filter... [0.06301s] Searching alignments... [84.0378s] Deallocating buffers... [2.18019s] Opening temporary output file... [0.00068s] Computing alignments... [585.117s] Deallocating reference... [0.820357s] Loading reference sequences... [334.922s] Masking reference... [57.3531s] Initializing temporary storage... [0.00478s] Building reference histograms... [12.6976s] Allocating buffers... [0.000822s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.57156s] Building query seed array... [1.74123s] Computing hash join... [6.94206s] Building seed filter... [0.041443s] Searching alignments... [171.889s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.0732s] Building query seed array... [2.01368s] Computing hash join... [5.83495s] Building seed filter... [0.037795s] Searching alignments... [123.474s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.4446s] Building query seed array... [2.07551s] Computing hash join... [5.58231s] Building seed filter... [0.070524s] Searching alignments... [108.49s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.37593s] Building query seed array... [1.71716s] Computing hash join... [4.81459s] Building seed filter... [0.069492s] Searching alignments... [91.8287s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.77088s] Building query seed array... [1.49548s] Computing hash join... [4.24326s] Building seed filter... [0.046332s] Searching alignments... [118.467s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.0797s] Building query seed array... [1.81063s] Computing hash join... [6.0334s] Building seed filter... [0.050293s] Searching alignments... [98.512s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.5614s] Building query seed array... [1.81568s] Computing hash join... [5.61029s] Building seed filter... [0.048602s] Searching alignments... [136.301s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.36956s] Building query seed array... [1.50458s] Computing hash join... [4.10531s] Building seed filter... [0.031457s] Searching alignments... [90.8332s] Deallocating buffers... [2.09179s] Opening temporary output file... [0.00079s] Computing alignments... [466.936s] Deallocating reference... [0.771618s] Loading reference sequences... [317.769s] Masking reference... [58.1318s] Initializing temporary storage... [0.005613s] Building reference histograms... [13.3788s] Allocating buffers... [0.000804s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [8.99803s] Building query seed array... [1.5112s] Computing hash join... [6.456s] Building seed filter... [0.045007s] Searching alignments... [155.229s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.2276s] Building query seed array... [1.8845s] Computing hash join... [5.64896s] Building seed filter... [0.05196s] Searching alignments... [104.172s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.3932s] Building query seed array... [1.9567s] Computing hash join... [5.42538s] Building seed filter... [0.048879s] Searching alignments... [102.385s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.75897s] Building query seed array... [1.65204s] Computing hash join... [5.30044s] Building seed filter... [0.054618s] Searching alignments... [70.7229s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.26103s] Building query seed array... [1.34741s] Computing hash join... [5.49668s] Building seed filter... [0.05376s] Searching alignments... [97.2928s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.8333s] Building query seed array... [1.69649s] Computing hash join... [4.11701s] Building seed filter... [0.046024s] Searching alignments... [64.5765s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.0234s] Building query seed array... [1.72985s] Computing hash join... [5.23195s] Building seed filter... [0.037762s] Searching alignments... [67.1738s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.10422s] Building query seed array... [1.41267s] Computing hash join... [5.00788s] Building seed filter... [0.044607s] Searching alignments... [52.7804s] Deallocating buffers... [1.60678s] Opening temporary output file... [0.00189s] Computing alignments... [395.757s] Deallocating reference... [0.590852s] Loading reference sequences... [134.939s] Masking reference... [21.3932s] Initializing temporary storage... [0.004424s] Building reference histograms... [4.89307s] Allocating buffers... [0.000212s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.32312s] Building query seed array... [1.51815s] Computing hash join... [1.80248s] Building seed filter... [0.027198s] Searching alignments... [61.2012s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.35274s] Building query seed array... [1.83392s] Computing hash join... [1.8087s] Building seed filter... [0.021933s] Searching alignments... [79.6629s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.35157s] Building query seed array... [1.88495s] Computing hash join... [1.82266s] Building seed filter... [0.024859s] Searching alignments... [52.4058s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.27669s] Building query seed array... [1.52834s] Computing hash join... [1.88832s] Building seed filter... [0.023466s] Searching alignments... [43.1786s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.26098s] Building query seed array... [1.36725s] Computing hash join... [1.71662s] Building seed filter... [0.020974s] Searching alignments... [71.3245s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.19742s] Building query seed array... [1.61557s] Computing hash join... [1.72099s] Building seed filter... [0.021973s] Searching alignments... [27.0227s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.37638s] Building query seed array... [1.72111s] Computing hash join... [1.71206s] Building seed filter... [0.023524s] Searching alignments... [80.3092s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.23743s] Building query seed array... [1.38092s] Computing hash join... [1.67943s] Building seed filter... [0.021094s] Searching alignments... [25.8533s] Deallocating buffers... [0.068236s] Opening temporary output file... [0.002318s] Computing alignments... [218.618s] Deallocating reference... [0.027571s] Loading reference sequences... [0.072359s] Deallocating buffers... [0.039283s] Joining output blocks... [517.083s] Deallocating queries... [0.049754s] Loading query sequences... [4e-05s] Closing the input file... [6.8e-05s] Closing the output file... [0.25818s] Closing the database file... [3.5e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 10723.7s Reported 2571048740 pairwise alignments, 2571081875 HSPs. 5140710 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.050017s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.095735s] Opening the output file... [0.000456s] Loading query sequences... [58.6736s] Masking queries... [57.5s] Building query seed set... [0.314933s] Algorithm: Double-indexed Building query histograms... [2.13399s] Allocating buffers... [0.001218s] Loading reference sequences... [48.9033s] Masking reference... [57.0716s] Initializing temporary storage... [0.00685s] Building reference histograms... [13.3847s] Allocating buffers... [0.000206s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.1294s] Building query seed array... [1.34174s] Computing hash join... [6.48845s] Building seed filter... [0.086459s] Searching alignments... [146.131s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [12.6739s] Building query seed array... [2.0987s] Computing hash join... [3.99688s] Building seed filter... [0.034655s] Searching alignments... [217.597s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.9813s] Building query seed array... [1.80617s] Computing hash join... [4.50081s] Building seed filter... [0.063667s] Searching alignments... [93.8657s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.779s] Building query seed array... [1.56139s] Computing hash join... [4.22599s] Building seed filter... [0.035555s] Searching alignments... [115.453s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [9.60225s] Building query seed array... [1.38388s] Computing hash join... [4.17668s] Building seed filter... [0.042679s] Searching alignments... [132.674s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [12.2662s] Building query seed array... [1.60943s] Computing hash join... [5.57688s] Building seed filter... [0.041139s] Searching alignments... [69.3762s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [12.4541s] Building query seed array... [1.70116s] Computing hash join... [5.1729s] Building seed filter... [0.060627s] Searching alignments... [106.437s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.58996s] Building query seed array... [1.43059s] Computing hash join... [3.98128s] Building seed filter... [0.045889s] Searching alignments... [63.4107s] Deallocating buffers... [2.25869s] Opening temporary output file... [0.002001s] Computing alignments... [548.251s] Deallocating reference... [0.656289s] Loading reference sequences... [352.122s] Masking reference... [57.2369s] Initializing temporary storage... [0.005478s] Building reference histograms... [12.5224s] Allocating buffers... [0.000187s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.00764s] Building query seed array... [1.5126s] Computing hash join... [6.76851s] Building seed filter... [0.041361s] Searching alignments... [107.874s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.4792s] Building query seed array... [1.87551s] Computing hash join... [4.71651s] Building seed filter... [0.06297s] Searching alignments... [135.269s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [12.4273s] Building query seed array... [1.87464s] Computing hash join... [4.4009s] Building seed filter... [0.046765s] Searching alignments... [101.782s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.88297s] Building query seed array... [1.59576s] Computing hash join... [4.43757s] Building seed filter... [0.062199s] Searching alignments... [62.9686s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.77774s] Building query seed array... [1.43684s] Computing hash join... [3.87629s] Building seed filter... [0.057024s] Searching alignments... [79.4822s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.0164s] Building query seed array... [1.66736s] Computing hash join... [4.29589s] Building seed filter... [0.036012s] Searching alignments... [94.0334s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.6311s] Building query seed array... [1.67485s] Computing hash join... [5.36301s] Building seed filter... [0.056827s] Searching alignments... [63.9159s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [9.84197s] Building query seed array... [1.42439s] Computing hash join... [5.28287s] Building seed filter... [0.052543s] Searching alignments... [54.779s] Deallocating buffers... [2.30681s] Opening temporary output file... [0.001692s] Computing alignments... [364.938s] Deallocating reference... [0.652711s] Loading reference sequences... [353.737s] Masking reference... [57.5271s] Initializing temporary storage... [0.006577s] Building reference histograms... [13.0024s] Allocating buffers... [0.000227s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.28409s] Building query seed array... [1.52722s] Computing hash join... [6.44267s] Building seed filter... [0.065801s] Searching alignments... [144.03s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.562s] Building query seed array... [1.78239s] Computing hash join... [5.31792s] Building seed filter... [0.055104s] Searching alignments... [135.961s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.5188s] Building query seed array... [1.79425s] Computing hash join... [5.86497s] Building seed filter... [0.046558s] Searching alignments... [99.0979s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.58848s] Building query seed array... [1.5378s] Computing hash join... [5.08797s] Building seed filter... [0.034351s] Searching alignments... [116.07s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.58058s] Building query seed array... [1.3639s] Computing hash join... [5.67456s] Building seed filter... [0.032292s] Searching alignments... [125.901s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [11.9621s] Building query seed array... [1.61383s] Computing hash join... [5.99115s] Building seed filter... [0.055763s] Searching alignments... [89.0966s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.1638s] Building query seed array... [1.60663s] Computing hash join... [5.96257s] Building seed filter... [0.035368s] Searching alignments... [198.056s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.57182s] Building query seed array... [1.36164s] Computing hash join... [5.55444s] Building seed filter... [0.030799s] Searching alignments... [65.3945s] Deallocating buffers... [2.09546s] Opening temporary output file... [0.001918s] Computing alignments... [540.359s] Deallocating reference... [0.580876s] Loading reference sequences... [355.318s] Masking reference... [57.9164s] Initializing temporary storage... [0.006286s] Building reference histograms... [12.5142s] Allocating buffers... [0.000188s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.06403s] Building query seed array... [1.30914s] Computing hash join... [6.20724s] Building seed filter... [0.040848s] Searching alignments... [143.686s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [14.3607s] Building query seed array... [1.6499s] Computing hash join... [5.58147s] Building seed filter... [0.037822s] Searching alignments... [122.97s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [13.4039s] Building query seed array... [1.97541s] Computing hash join... [4.90445s] Building seed filter... [0.038166s] Searching alignments... [82.7435s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.88417s] Building query seed array... [1.40277s] Computing hash join... [4.83507s] Building seed filter... [0.035096s] Searching alignments... [94.3148s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.64624s] Building query seed array... [1.25635s] Computing hash join... [3.81871s] Building seed filter... [0.058397s] Searching alignments... [81.7748s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.52s] Building query seed array... [1.48547s] Computing hash join... [4.46324s] Building seed filter... [0.039356s] Searching alignments... [62.6942s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.4516s] Building query seed array... [1.53898s] Computing hash join... [4.05024s] Building seed filter... [0.044455s] Searching alignments... [94.2649s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.51961s] Building query seed array... [1.26531s] Computing hash join... [4.29718s] Building seed filter... [0.034831s] Searching alignments... [60.6641s] Deallocating buffers... [2.33486s] Opening temporary output file... [0.002033s] Computing alignments... [405.722s] Deallocating reference... [0.426156s] Loading reference sequences... [389.017s] Masking reference... [57.9651s] Initializing temporary storage... [0.006502s] Building reference histograms... [13.0924s] Allocating buffers... [0.000196s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.09223s] Building query seed array... [1.29789s] Computing hash join... [7.0791s] Building seed filter... [0.040704s] Searching alignments... [137.415s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [11.9262s] Building query seed array... [1.63536s] Computing hash join... [5.52496s] Building seed filter... [0.05741s] Searching alignments... [95.4606s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.8476s] Building query seed array... [1.67769s] Computing hash join... [5.52269s] Building seed filter... [0.044199s] Searching alignments... [71.6878s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [9.74207s] Building query seed array... [1.40419s] Computing hash join... [5.2301s] Building seed filter... [0.062955s] Searching alignments... [77.5505s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.58135s] Building query seed array... [1.18795s] Computing hash join... [4.36312s] Building seed filter... [0.051962s] Searching alignments... [69.4246s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [11.6936s] Building query seed array... [1.47744s] Computing hash join... [5.28721s] Building seed filter... [0.061256s] Searching alignments... [59.916s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.2896s] Building query seed array... [1.46207s] Computing hash join... [5.14007s] Building seed filter... [0.055195s] Searching alignments... [61.9351s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.43628s] Building query seed array... [1.25779s] Computing hash join... [4.72075s] Building seed filter... [0.05568s] Searching alignments... [39.266s] Deallocating buffers... [2.02482s] Opening temporary output file... [0.001689s] Computing alignments... [372.635s] Deallocating reference... [0.471035s] Loading reference sequences... [16.0394s] Masking reference... [21.6823s] Initializing temporary storage... [0.005603s] Building reference histograms... [4.66599s] Allocating buffers... [0.000188s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.27198s] Building query seed array... [1.31454s] Computing hash join... [1.66749s] Building seed filter... [0.029352s] Searching alignments... [50.7067s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.23142s] Building query seed array... [1.57177s] Computing hash join... [1.70586s] Building seed filter... [0.020087s] Searching alignments... [84.231s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.29094s] Building query seed array... [1.61121s] Computing hash join... [1.70923s] Building seed filter... [0.024115s] Searching alignments... [37.107s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.28721s] Building query seed array... [1.31634s] Computing hash join... [1.70867s] Building seed filter... [0.021244s] Searching alignments... [45.3909s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.24739s] Building query seed array... [1.1546s] Computing hash join... [1.64032s] Building seed filter... [0.020435s] Searching alignments... [46.1784s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.19491s] Building query seed array... [1.39941s] Computing hash join... [1.63527s] Building seed filter... [0.01963s] Searching alignments... [32.8129s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.29622s] Building query seed array... [1.46681s] Computing hash join... [1.64043s] Building seed filter... [0.021797s] Searching alignments... [66.7337s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.21218s] Building query seed array... [1.1685s] Computing hash join... [1.59376s] Building seed filter... [0.020833s] Searching alignments... [22.4569s] Deallocating buffers... [0.053569s] Opening temporary output file... [0.07843s] Computing alignments... [205.425s] Deallocating reference... [0.029336s] Loading reference sequences... [0.076049s] Deallocating buffers... [0.026495s] Joining output blocks... [725.863s] Deallocating queries... [0.042919s] Loading query sequences... [4.3e-05s] Closing the input file... [6.4e-05s] Closing the output file... [0.240904s] Closing the database file... [3.5e-05s] Deallocating taxonomy... [1.3e-05s] Total time = 10314.4s Reported 2669023058 pairwise alignments, 2669061578 HSPs. 4724987 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.066661s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.073706s] Opening the output file... [0.000453s] Loading query sequences... [58.3879s] Masking queries... [42.701s] Building query seed set... [0.316715s] Algorithm: Double-indexed Building query histograms... [2.20325s] Allocating buffers... [0.000715s] Loading reference sequences... [55.2747s] Masking reference... [58.2879s] Initializing temporary storage... [0.006425s] Building reference histograms... [13.5794s] Allocating buffers... [0.000206s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [9.05306s] Building query seed array... [1.3793s] Computing hash join... [6.659s] Building seed filter... [0.054278s] Searching alignments... [136.07s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [11.8956s] Building query seed array... [2.1822s] Computing hash join... [3.89754s] Building seed filter... [0.061859s] Searching alignments... [162.197s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [12.6719s] Building query seed array... [1.89213s] Computing hash join... [5.37979s] Building seed filter... [0.068944s] Searching alignments... [109.056s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [9.60202s] Building query seed array... [1.72134s] Computing hash join... [5.36689s] Building seed filter... [0.040729s] Searching alignments... [98.3588s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [8.88781s] Building query seed array... [1.45284s] Computing hash join... [3.89643s] Building seed filter... [0.039994s] Searching alignments... [196.818s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [12.1913s] Building query seed array... [1.72163s] Computing hash join... [5.51293s] Building seed filter... [0.044948s] Searching alignments... [82.0307s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [11.8801s] Building query seed array... [1.73083s] Computing hash join... [4.30042s] Building seed filter... [0.033689s] Searching alignments... [96.8625s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [9.3229s] Building query seed array... [1.45834s] Computing hash join... [4.78594s] Building seed filter... [0.036185s] Searching alignments... [77.6731s] Deallocating buffers... [1.7443s] Opening temporary output file... [0.000722s] Computing alignments... [554.991s] Deallocating reference... [0.765517s] Loading reference sequences... [391.012s] Masking reference... [57.1599s] Initializing temporary storage... [0.005512s] Building reference histograms... [12.6877s] Allocating buffers... [0.000186s] Processing query block 0, reference block 1, shape 0, index chunk 0. Building reference seed array... [9.0525s] Building query seed array... [1.66952s] Computing hash join... [6.63978s] Building seed filter... [0.037755s] Searching alignments... [102.497s] Processing query block 0, reference block 1, shape 0, index chunk 1. Building reference seed array... [12.4263s] Building query seed array... [1.92709s] Computing hash join... [4.25137s] Building seed filter... [0.057665s] Searching alignments... [100.859s] Processing query block 0, reference block 1, shape 0, index chunk 2. Building reference seed array... [13.294s] Building query seed array... [2.00222s] Computing hash join... [4.52544s] Building seed filter... [0.069832s] Searching alignments... [77.3s] Processing query block 0, reference block 1, shape 0, index chunk 3. Building reference seed array... [9.82708s] Building query seed array... [1.60235s] Computing hash join... [3.85632s] Building seed filter... [0.06023s] Searching alignments... [56.742s] Processing query block 0, reference block 1, shape 1, index chunk 0. Building reference seed array... [9.3494s] Building query seed array... [1.43044s] Computing hash join... [4.23112s] Building seed filter... [0.036174s] Searching alignments... [86.2839s] Processing query block 0, reference block 1, shape 1, index chunk 1. Building reference seed array... [12.1369s] Building query seed array... [1.73523s] Computing hash join... [5.31861s] Building seed filter... [0.06646s] Searching alignments... [52.0641s] Processing query block 0, reference block 1, shape 1, index chunk 2. Building reference seed array... [12.4813s] Building query seed array... [1.72414s] Computing hash join... [5.83084s] Building seed filter... [0.063315s] Searching alignments... [52.1841s] Processing query block 0, reference block 1, shape 1, index chunk 3. Building reference seed array... [10.0579s] Building query seed array... [1.45682s] Computing hash join... [4.19965s] Building seed filter... [0.046786s] Searching alignments... [54.0512s] Deallocating buffers... [2.20796s] Opening temporary output file... [0.001647s] Computing alignments... [357.941s] Deallocating reference... [0.744473s] Loading reference sequences... [359.566s] Masking reference... [57.0426s] Initializing temporary storage... [0.005132s] Building reference histograms... [12.1866s] Allocating buffers... [0.000188s] Processing query block 0, reference block 2, shape 0, index chunk 0. Building reference seed array... [9.19168s] Building query seed array... [1.61049s] Computing hash join... [6.12328s] Building seed filter... [0.046175s] Searching alignments... [144.967s] Processing query block 0, reference block 2, shape 0, index chunk 1. Building reference seed array... [12.8693s] Building query seed array... [1.89083s] Computing hash join... [4.6982s] Building seed filter... [0.049233s] Searching alignments... [164.897s] Processing query block 0, reference block 2, shape 0, index chunk 2. Building reference seed array... [12.534s] Building query seed array... [1.86007s] Computing hash join... [4.61146s] Building seed filter... [0.037109s] Searching alignments... [92.2758s] Processing query block 0, reference block 2, shape 0, index chunk 3. Building reference seed array... [9.79132s] Building query seed array... [1.61543s] Computing hash join... [4.87406s] Building seed filter... [0.055603s] Searching alignments... [104.567s] Processing query block 0, reference block 2, shape 1, index chunk 0. Building reference seed array... [9.42956s] Building query seed array... [1.43288s] Computing hash join... [3.8374s] Building seed filter... [0.05606s] Searching alignments... [172.473s] Processing query block 0, reference block 2, shape 1, index chunk 1. Building reference seed array... [12.3297s] Building query seed array... [1.63594s] Computing hash join... [5.63797s] Building seed filter... [0.052086s] Searching alignments... [69.2129s] Processing query block 0, reference block 2, shape 1, index chunk 2. Building reference seed array... [12.3878s] Building query seed array... [1.68193s] Computing hash join... [5.07621s] Building seed filter... [0.044541s] Searching alignments... [190.188s] Processing query block 0, reference block 2, shape 1, index chunk 3. Building reference seed array... [9.82342s] Building query seed array... [1.37228s] Computing hash join... [5.17186s] Building seed filter... [0.062313s] Searching alignments... [73.2946s] Deallocating buffers... [2.16073s] Opening temporary output file... [0.00192s] Computing alignments... [523.656s] Deallocating reference... [0.865846s] Loading reference sequences... [346.233s] Masking reference... [57.8331s] Initializing temporary storage... [0.005373s] Building reference histograms... [12.8069s] Allocating buffers... [0.000192s] Processing query block 0, reference block 3, shape 0, index chunk 0. Building reference seed array... [9.08643s] Building query seed array... [1.45094s] Computing hash join... [6.21095s] Building seed filter... [0.060471s] Searching alignments... [159.081s] Processing query block 0, reference block 3, shape 0, index chunk 1. Building reference seed array... [12.339s] Building query seed array... [1.78314s] Computing hash join... [4.14035s] Building seed filter... [0.048376s] Searching alignments... [111.667s] Processing query block 0, reference block 3, shape 0, index chunk 2. Building reference seed array... [12.8802s] Building query seed array... [1.79591s] Computing hash join... [4.82046s] Building seed filter... [0.041319s] Searching alignments... [95.7785s] Processing query block 0, reference block 3, shape 0, index chunk 3. Building reference seed array... [9.76389s] Building query seed array... [1.46965s] Computing hash join... [4.16405s] Building seed filter... [0.061179s] Searching alignments... [80.6271s] Processing query block 0, reference block 3, shape 1, index chunk 0. Building reference seed array... [9.57268s] Building query seed array... [1.29326s] Computing hash join... [4.28427s] Building seed filter... [0.036656s] Searching alignments... [109.665s] Processing query block 0, reference block 3, shape 1, index chunk 1. Building reference seed array... [12.3628s] Building query seed array... [1.56161s] Computing hash join... [4.1452s] Building seed filter... [0.050655s] Searching alignments... [85.2395s] Processing query block 0, reference block 3, shape 1, index chunk 2. Building reference seed array... [12.2055s] Building query seed array... [1.56795s] Computing hash join... [5.17853s] Building seed filter... [0.038998s] Searching alignments... [119.789s] Processing query block 0, reference block 3, shape 1, index chunk 3. Building reference seed array... [9.91798s] Building query seed array... [1.29335s] Computing hash join... [4.06106s] Building seed filter... [0.046005s] Searching alignments... [80.3021s] Deallocating buffers... [2.20216s] Opening temporary output file... [0.000627s] Computing alignments... [431.137s] Deallocating reference... [0.955429s] Loading reference sequences... [391.932s] Masking reference... [57.3217s] Initializing temporary storage... [0.004394s] Building reference histograms... [12.1521s] Allocating buffers... [0.000192s] Processing query block 0, reference block 4, shape 0, index chunk 0. Building reference seed array... [9.62198s] Building query seed array... [1.456s] Computing hash join... [6.06652s] Building seed filter... [0.067229s] Searching alignments... [144.504s] Processing query block 0, reference block 4, shape 0, index chunk 1. Building reference seed array... [12.5247s] Building query seed array... [1.72295s] Computing hash join... [3.99585s] Building seed filter... [0.041261s] Searching alignments... [93.2435s] Processing query block 0, reference block 4, shape 0, index chunk 2. Building reference seed array... [12.4141s] Building query seed array... [1.75958s] Computing hash join... [4.13314s] Building seed filter... [0.036866s] Searching alignments... [91.3846s] Processing query block 0, reference block 4, shape 0, index chunk 3. Building reference seed array... [10.7445s] Building query seed array... [1.46953s] Computing hash join... [5.25121s] Building seed filter... [0.063619s] Searching alignments... [66.4657s] Processing query block 0, reference block 4, shape 1, index chunk 0. Building reference seed array... [9.59891s] Building query seed array... [1.25289s] Computing hash join... [5.44079s] Building seed filter... [0.066721s] Searching alignments... [90.2442s] Processing query block 0, reference block 4, shape 1, index chunk 1. Building reference seed array... [12.4993s] Building query seed array... [1.54062s] Computing hash join... [6.10287s] Building seed filter... [0.038431s] Searching alignments... [58.7446s] Processing query block 0, reference block 4, shape 1, index chunk 2. Building reference seed array... [12.1366s] Building query seed array... [1.55887s] Computing hash join... [5.14831s] Building seed filter... [0.039619s] Searching alignments... [57.688s] Processing query block 0, reference block 4, shape 1, index chunk 3. Building reference seed array... [9.95686s] Building query seed array... [1.37438s] Computing hash join... [5.29899s] Building seed filter... [0.041137s] Searching alignments... [45.1214s] Deallocating buffers... [2.29537s] Opening temporary output file... [0.000662s] Computing alignments... [365.31s] Deallocating reference... [0.805536s] Loading reference sequences... [18.6127s] Masking reference... [20.9153s] Initializing temporary storage... [0.005252s] Building reference histograms... [4.80359s] Allocating buffers... [0.000754s] Processing query block 0, reference block 5, shape 0, index chunk 0. Building reference seed array... [3.30146s] Building query seed array... [1.34814s] Computing hash join... [1.7785s] Building seed filter... [0.029115s] Searching alignments... [55.1221s] Processing query block 0, reference block 5, shape 0, index chunk 1. Building reference seed array... [4.67416s] Building query seed array... [1.62194s] Computing hash join... [1.74332s] Building seed filter... [0.021891s] Searching alignments... [64.9363s] Processing query block 0, reference block 5, shape 0, index chunk 2. Building reference seed array... [4.4324s] Building query seed array... [1.71897s] Computing hash join... [1.7313s] Building seed filter... [0.027702s] Searching alignments... [45.5122s] Processing query block 0, reference block 5, shape 0, index chunk 3. Building reference seed array... [3.42483s] Building query seed array... [1.39258s] Computing hash join... [1.77659s] Building seed filter... [0.021699s] Searching alignments... [37.9719s] Processing query block 0, reference block 5, shape 1, index chunk 0. Building reference seed array... [3.36864s] Building query seed array... [1.24074s] Computing hash join... [1.6592s] Building seed filter... [0.020115s] Searching alignments... [65.9509s] Processing query block 0, reference block 5, shape 1, index chunk 1. Building reference seed array... [4.30796s] Building query seed array... [1.49803s] Computing hash join... [1.66522s] Building seed filter... [0.020762s] Searching alignments... [23.3733s] Processing query block 0, reference block 5, shape 1, index chunk 2. Building reference seed array... [4.32931s] Building query seed array... [1.50811s] Computing hash join... [1.64589s] Building seed filter... [0.02016s] Searching alignments... [64.0089s] Processing query block 0, reference block 5, shape 1, index chunk 3. Building reference seed array... [3.38448s] Building query seed array... [1.23483s] Computing hash join... [1.65162s] Building seed filter... [0.021671s] Searching alignments... [22.8174s] Deallocating buffers... [0.290847s] Opening temporary output file... [0.030224s] Computing alignments... [203.252s] Deallocating reference... [0.036997s] Loading reference sequences... [0.030361s] Deallocating buffers... [0.037637s] Joining output blocks... [463.057s] Deallocating queries... [0.03665s] Loading query sequences... [3.1e-05s] Closing the input file... [4.6e-05s] Closing the output file... [0.2631s] Closing the database file... [3.4e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 10141.1s Reported 2275445932 pairwise alignments, 2275474308 HSPs. 4558281 queries aligned.