Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 304428_R1.blastx.cat.daa, 304428_R2.blastx.cat.daa Output file: 304428.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 304428_R1.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 304428_R2.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8080.0s) Total reads: 14,024,469 Alignments: 415,509,683 100% (0.0s) 100% (0.1s) 100% (0.2s) Linking paired reads Number of pairs: 5,582,393 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 14,024,469 With hits: 14,024,469 Alignments: 415,509,683 Assig. Taxonomy: 14,001,560 Assig. EGGNOG: 4,036,766 Assig. INTERPRO2GO: 9,134,067 Tax. ass. by mate: 13,638 MinSupport set to: 7012 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 3,256 Binning reads: Writing classification tables Numb. Tax. classes: 138 Numb. EGG. classes: 2,005 Numb. INT. classes: 6,398 Binning reads: Syncing Class. Taxonomy: 138 Class. EGGNOG: 2,005 Class. INTERPRO2GO: 6,398 100% (44397.5s) Total time: 52489s Peak memory: 19.8 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 329774_R1.blastx.cat.daa, 329774_R2.blastx.cat.daa Output file: 329774.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 329774_R1.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 329774_R2.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4763.2s) Total reads: 10,101,767 Alignments: 293,856,607 100% (0.0s) 100% (0.1s) 100% (0.2s) Linking paired reads Number of pairs: 3,648,077 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 10,101,767 With hits: 10,101,767 Alignments: 293,856,607 Assig. Taxonomy: 10,086,934 Assig. EGGNOG: 2,861,250 Assig. INTERPRO2GO: 6,511,036 Tax. ass. by mate: 9,528 MinSupport set to: 5050 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 3,789 Binning reads: Writing classification tables Numb. Tax. classes: 154 Numb. EGG. classes: 2,114 Numb. INT. classes: 6,509 Binning reads: Syncing Class. Taxonomy: 154 Class. EGGNOG: 2,114 Class. INTERPRO2GO: 6,509 100% (30316.4s) Total time: 35090s Peak memory: 19.8 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 329775_R1.blastx.cat.daa, 329775_R2.blastx.cat.daa Output file: 329775.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 329775_R1.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 329775_R2.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4024.0s) Total reads: 9,845,590 Alignments: 285,722,424 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 3,893,336 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 9,845,590 With hits: 9,845,590 Alignments: 285,722,424 Assig. Taxonomy: 9,831,818 Assig. EGGNOG: 2,627,120 Assig. INTERPRO2GO: 6,590,975 Tax. ass. by mate: 10,029 MinSupport set to: 4922 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,826 Binning reads: Writing classification tables Numb. Tax. classes: 131 Numb. EGG. classes: 2,021 Numb. INT. classes: 5,586 Binning reads: Syncing Class. Taxonomy: 131 Class. EGGNOG: 2,021 Class. INTERPRO2GO: 5,586 100% (30872.4s) Total time: 34907s Peak memory: 19.2 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 329776_R1.blastx.cat.daa, 329776_R2.blastx.cat.daa Output file: 329776.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 329776_R1.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 329776_R2.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9834.6s) Total reads: 9,917,649 Alignments: 254,466,590 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 3,554,209 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 9,917,649 With hits: 9,917,649 Alignments: 254,466,590 Assig. Taxonomy: 9,898,289 Assig. EGGNOG: 2,264,231 Assig. INTERPRO2GO: 6,079,226 Tax. ass. by mate: 28,047 MinSupport set to: 4958 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 3,574 Binning reads: Writing classification tables Numb. Tax. classes: 188 Numb. EGG. classes: 2,050 Numb. INT. classes: 6,314 Binning reads: Syncing Class. Taxonomy: 188 Class. EGGNOG: 2,050 Class. INTERPRO2GO: 6,314 100% (28224.1s) Total time: 38070s Peak memory: 10.8 of 52.4G Version MEGAN Community Edition (version 6.18.3, built 17 Dec 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Functional classifications to use: EGGNOG, INTERPRO2GO Loading ncbi.map: 2,175,506 Loading ncbi.tre: 2,175,510 Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Loading interpro2go.map: 13,501 Loading interpro2go.tre: 29,204 Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin In DAA files: 329777_R1.blastx.cat.daa, 329777_R2.blastx.cat.daa Output file: 329777.daa2rma.rma6 Classifications: Taxonomy, EGGNOG, INTERPRO2GO Annotating RMA6 file using EXTENDED mode Parsing file: 329777_R1.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% Parsing file: 329777_R2.blastx.cat.daa 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4015.8s) Total reads: 10,434,830 Alignments: 283,891,272 100% (0.0s) 100% (0.0s) 100% (0.0s) Linking paired reads Number of pairs: 3,855,511 Binning reads: Initializing... Initializing binning... Using paired reads in taxonomic assignment... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads: Analyzing alignments Total reads: 10,434,830 With hits: 10,434,830 Alignments: 283,891,272 Assig. Taxonomy: 10,422,517 Assig. EGGNOG: 2,677,464 Assig. INTERPRO2GO: 7,301,022 Tax. ass. by mate: 10,108 MinSupport set to: 5217 Binning reads: Applying min-support & disabled filter to Taxonomy... Min-supp. changes: 1,500 Binning reads: Writing classification tables Numb. Tax. classes: 127 Numb. EGG. classes: 1,648 Numb. INT. classes: 4,882 Binning reads: Syncing Class. Taxonomy: 127 Class. EGGNOG: 1,648 Class. INTERPRO2GO: 4,882 100% (30250.5s) Total time: 34277s Peak memory: 20.4 of 52.4G --------------------- Total runtime was: 194871 seconds