FastQCFastQC Report
Wed 18 Dec 2019
329776_S3_L002_R1_001.fastp-trim.201912180540.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename329776_S3_L002_R1_001.fastp-trim.201912180540.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21815938
Sequences flagged as poor quality0
Sequence length16-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA378250.17338241426978754No Hit
CTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAGT375970.17233730678919237No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG310670.14240506184056811No Hit
GTGAAAGTTAGTATATAATCTTAGTACATTCTCGGCATTGCTCAGAATTC276090.1265542650515417No Hit
GTCGTGTGGAGCCAATGCCGCCGCCAAGGTTAGGCTGGGAAATGAATGGC270690.12407901049223738No Hit
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG263650.12085201195566288No Hit
GCTACCTTTGCACGGTCAAAATACCGCGGCTCTTAAACAATCCTATGTCA235940.10815028902264023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)