FastQCFastQC Report
Wed 18 Dec 2019
329776_S3_L001_R2_001.fastp-trim.201912180142.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename329776_S3_L001_R2_001.fastp-trim.201912180142.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24773548
Sequences flagged as poor quality0
Sequence length15-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTC1556870.6284404639981321No Hit
CGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGG933970.3770029226334476No Hit
GCATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCG916760.3700559968237089No Hit
CTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCT803610.32438228064869834No Hit
CAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGC651490.26297807645477345No Hit
ATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGC574750.23200148803877427No Hit
CATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACGCCG504370.20359215401847164No Hit
TGGCATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGG491380.19834865801216686No Hit
CATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACGCCA409140.16515195966278226No Hit
CATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACG391480.1580233884948575No Hit
CGCTTGGCATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGC352930.14246243614358348No Hit
CATGGAGCGACGCACCCTGCTGGTTGTCCTGCTGGTGTGCAGCCTGGTGC331790.13392914087235303No Hit
TGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACGCCAACCAACATATC292870.1182188356710149No Hit
TGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACGCCGACCAAGTTTTC259020.10455506817190659No Hit
CATCCTCGACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGG256320.10346519602279013No Hit
GCTACACACTGTGGCGAACTCTCCTGCCTTGACTACACTGCCTACTCGAA254870.10287989431307942No Hit
TGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTGCACGCCGAC254660.10279512647925924No Hit
ACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGTG252760.10202817941136247No Hit
GACAACATCATGCGTGTCCTGTTAATCCTGGTCAGCCTGGCGGCTCTGGT252440.10189900937887458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)