FastQCFastQC Report
Wed 18 Dec 2019
329776_S3_L001_R1_001.fastp-trim.201912180142.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename329776_S3_L001_R1_001.fastp-trim.201912180142.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24773548
Sequences flagged as poor quality0
Sequence length15-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA451000.18204901453760278No Hit
CTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAGT446050.1800509155975559No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG373200.1506445503889875No Hit
GTGAAAGTTAGTATATAATCTTAGTACATTCTCGGCATTGCTCAGAATTC326570.13182205471739455No Hit
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG315730.12744641986686767No Hit
GTCGTGTGGAGCCAATGCCGCCGCCAAGGTTAGGCTGGGAAATGAATGGC315240.12724862825462063No Hit
GCTACCTTTGCACGGTCAAAATACCGCGGCTCTTAAACAATCCTATGTCA267930.10815164626399093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)