FastQCFastQC Report
Wed 18 Dec 2019
329774_S1_L001_R1_001.fastp-trim.201912184855.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename329774_S1_L001_R1_001.fastp-trim.201912184855.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24166451
Sequences flagged as poor quality0
Sequence length17-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTTTGCACGGTCAAAATACCGCGGCTCTTAAACAATCCTATGTCA309680.1281445918558749No Hit
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA258040.10677612529866301No Hit
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG249370.10318850707536659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)