FastQCFastQC Report
Wed 18 Dec 2019
304428_S1_L002_R1_001.fastp-trim.201912184416.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename304428_S1_L002_R1_001.fastp-trim.201912184416.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29917554
Sequences flagged as poor quality0
Sequence length21-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAA882240.2948904178463253No Hit
GTGAAAGTTAGTATATAATCTTAGTACATTCTCGGCATTGCTCAGAATTC654220.21867429402818156No Hit
GTACATTCTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCC544910.18213721616412892No Hit
GTCGTGTGGAGCCAATGCCGCCGCCAAGGTTAGGCTGGGAAATGAATGGC442870.14803014979098894No Hit
GTGATTTTTTTCTTTTCTTTAGAACTAACAACACAAACTCAAGAGAAAAT394940.13200945505103792No Hit
GCTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAG390380.13048526627544482No Hit
CTTCACAATTTACTCATGACTCAATAAAAACGTTTGAAAGCAGTGAAAGT382340.1277978808026886No Hit
GGGACGTTGGAAGGGTCGTGTGGAGCCAATGCCGCCGCCAAGGTTAGGCT373140.12472276309754467No Hit
CTCGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAG365650.12221921618324814No Hit
GGACGTTGGAAGGGTCGTGTGGAGCCAATGCCGCCGCCAAGGTTAGGCTG364310.12177131860445543No Hit
GGGACGTTGGATGGGTCGTGTGGAGCCAATGCCGCCGCCAAGGTTAGGCG359720.12023710227112819No Hit
CGGCATTGCTCAGAATTCTGTCCGTGTAGCATGGCAGGTCCTTGTTAGCC304290.10170951809763593No Hit
CTGGGAACCACCGGTGAATCCAGGCAGGGTCTGGACTCCTTGAAATCCAG302970.10126830555733267No Hit
CTCAATAAAAACGTTTGAAAGCAGTGAAAGTTAGTATATAATCTTAGTAC299720.10018198680279812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)