================================================== file name: C_rogercresseyi_top_21_scaffold.fa sequences: 21 total length: 506970227 bp (505277127 bp excl N/X-runs) GC level: 33.62 % bases masked: 102206477 bp ( 20.23 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- Retroelements 86045 49435979 bp 9.78 % SINEs: 294 19646 bp 0.00 % Penelope 598 57970 bp 0.01 % LINEs: 72332 44177147 bp 8.74 % CRE/SLACS 16 774 bp 0.00 % L2/CR1/Rex 2763 204912 bp 0.04 % R1/LOA/Jockey 766 47388 bp 0.01 % R2/R4/NeSL 121 9687 bp 0.00 % RTE/Bov-B 176 9384 bp 0.00 % L1/CIN4 53755 34908328 bp 6.91 % LTR elements: 13419 5239186 bp 1.04 % BEL/Pao 1159 834872 bp 0.17 % Ty1/Copia 1273 71850 bp 0.01 % Gypsy/DIRS1 9184 4219255 bp 0.84 % Retroviral 1553 94541 bp 0.02 % DNA transposons 156694 36681150 bp 7.26 % hobo-Activator 56240 10028031 bp 1.98 % Tc1-IS630-Pogo 36200 14582161 bp 2.89 % En-Spm 0 0 bp 0.00 % MuDR-IS905 0 0 bp 0.00 % PiggyBac 4060 1217668 bp 0.24 % Tourist/Harbinger 1279 70547 bp 0.01 % Other (Mirage, 15357 4073129 bp 0.81 % P-element, Transib) Rolling-circles 0 0 bp 0.00 % Unclassified: 35849 4494819 bp 0.89 % Total interspersed repeats: 90611948 bp 17.93 % Small RNA: 888 75568 bp 0.01 % Satellites: 512 36284 bp 0.01 % Simple repeats: 225229 10627193 bp 2.10 % Low complexity: 23165 1111639 bp 0.22 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs The query species was assumed to be root RepeatMasker Combined Database: Dfam_Consensus-20170127, RepBase-20170127 run with rmblastn version 2.6.0+